Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06180 and PS417_06185 are separated by 33 nucleotides PS417_06185 and PS417_06190 are separated by 213 nucleotides
PS417_06180: PS417_06180 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 1,370,166 to 1,371,200
_06180
PS417_06185: PS417_06185 - ArsC family transcriptional regulator, at 1,371,234 to 1,371,596
_06185
PS417_06190: PS417_06190 - sodium:proton antiporter, at 1,371,810 to 1,373,453
_06190
Position (kb)
1371
1372 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1371.236 kb on - strand at 1371.258 kb on - strand at 1371.258 kb on - strand at 1371.691 kb on + strand at 1371.691 kb on + strand at 1371.728 kb on + strand at 1371.728 kb on + strand at 1371.728 kb on + strand at 1371.728 kb on + strand at 1371.728 kb on + strand at 1371.728 kb on + strand at 1371.729 kb on - strand at 1371.729 kb on - strand at 1371.729 kb on - strand at 1371.729 kb on - strand at 1371.739 kb on + strand at 1371.740 kb on - strand at 1371.740 kb on - strand at 1371.809 kb on + strand at 1371.822 kb on + strand at 1371.952 kb on + strand at 1371.952 kb on + strand at 1371.953 kb on - strand at 1372.131 kb on - strand, within PS417_06190 at 1372.495 kb on - strand, within PS417_06190 at 1372.495 kb on - strand, within PS417_06190
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 1,371,236 - +0.2 1,371,258 - +1.4 1,371,258 - -0.8 1,371,691 + +2.1 1,371,691 + -0.0 1,371,728 + +0.3 1,371,728 + -0.1 1,371,728 + -1.6 1,371,728 + +1.0 1,371,728 + -4.5 1,371,728 + +0.1 1,371,729 - +1.4 1,371,729 - -0.4 1,371,729 - +3.4 1,371,729 - -1.2 1,371,739 + -0.0 1,371,740 - +0.4 1,371,740 - -0.4 1,371,809 + -1.8 1,371,822 + -0.1 1,371,952 + -1.2 1,371,952 + +0.3 1,371,953 - -1.2 1,372,131 - PS417_06190 0.20 +0.7 1,372,495 - PS417_06190 0.42 +1.1 1,372,495 - PS417_06190 0.42 +1.5
Or see this region's nucleotide sequence