Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05720 and PS417_05725 overlap by 4 nucleotides PS417_05725 and PS417_05730 overlap by 4 nucleotides PS417_05730 and PS417_05735 overlap by 4 nucleotides PS417_05735 and PS417_05740 are separated by 48 nucleotides
PS417_05720: PS417_05720 - phage baseplate protein, at 1,283,534 to 1,283,866
_05720
PS417_05725: PS417_05725 - baseplate J protein, at 1,283,863 to 1,284,858
_05725
PS417_05730: PS417_05730 - tail protein, at 1,284,855 to 1,285,493
_05730
PS417_05735: PS417_05735 - tail fiber protein, at 1,285,490 to 1,286,020
_05735
PS417_05740: PS417_05740 - hypothetical protein, at 1,286,069 to 1,286,851
_05740
Position (kb) 1284
1285
1286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1284.091 kb on + strand, within PS417_05725 at 1284.092 kb on - strand, within PS417_05725 at 1284.092 kb on - strand, within PS417_05725 at 1284.262 kb on + strand at 1284.262 kb on + strand, within PS417_05725 at 1284.262 kb on + strand, within PS417_05725 at 1284.263 kb on - strand, within PS417_05725 at 1284.263 kb on - strand, within PS417_05725 at 1284.385 kb on + strand, within PS417_05725 at 1284.386 kb on - strand, within PS417_05725 at 1284.386 kb on - strand, within PS417_05725 at 1284.386 kb on - strand, within PS417_05725 at 1284.386 kb on - strand, within PS417_05725 at 1284.407 kb on - strand, within PS417_05725 at 1284.492 kb on + strand, within PS417_05725 at 1284.599 kb on - strand, within PS417_05725 at 1284.683 kb on - strand, within PS417_05725 at 1284.849 kb on + strand at 1284.854 kb on + strand at 1284.854 kb on + strand at 1284.891 kb on - strand at 1284.891 kb on - strand at 1285.005 kb on + strand, within PS417_05730 at 1285.006 kb on - strand, within PS417_05730 at 1285.006 kb on - strand, within PS417_05730 at 1285.201 kb on - strand, within PS417_05730 at 1285.271 kb on + strand, within PS417_05730 at 1285.272 kb on - strand, within PS417_05730 at 1285.431 kb on - strand at 1285.455 kb on + strand at 1285.456 kb on - strand at 1285.456 kb on - strand at 1285.456 kb on - strand at 1285.757 kb on + strand at 1285.787 kb on + strand, within PS417_05735 at 1285.814 kb on + strand, within PS417_05735 at 1285.815 kb on - strand, within PS417_05735 at 1285.815 kb on - strand, within PS417_05735 at 1285.817 kb on - strand, within PS417_05735 at 1285.994 kb on - strand at 1286.000 kb on - strand at 1286.022 kb on - strand at 1286.114 kb on - strand at 1286.206 kb on - strand, within PS417_05740 at 1286.212 kb on + strand, within PS417_05740 at 1286.213 kb on - strand, within PS417_05740 at 1286.238 kb on - strand, within PS417_05740 at 1286.265 kb on + strand, within PS417_05740 at 1286.270 kb on - strand, within PS417_05740 at 1286.270 kb on - strand, within PS417_05740 at 1286.335 kb on + strand, within PS417_05740 at 1286.336 kb on - strand, within PS417_05740
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 1,284,091 + PS417_05725 0.23 -2.4 1,284,092 - PS417_05725 0.23 -2.1 1,284,092 - PS417_05725 0.23 +0.1 1,284,262 + +1.2 1,284,262 + PS417_05725 0.40 -1.1 1,284,262 + PS417_05725 0.40 -0.9 1,284,263 - PS417_05725 0.40 +0.3 1,284,263 - PS417_05725 0.40 +0.8 1,284,385 + PS417_05725 0.52 -0.2 1,284,386 - PS417_05725 0.53 -0.9 1,284,386 - PS417_05725 0.53 -1.4 1,284,386 - PS417_05725 0.53 -1.8 1,284,386 - PS417_05725 0.53 +0.8 1,284,407 - PS417_05725 0.55 -0.6 1,284,492 + PS417_05725 0.63 -3.4 1,284,599 - PS417_05725 0.74 +2.1 1,284,683 - PS417_05725 0.82 -0.4 1,284,849 + -0.4 1,284,854 + -0.9 1,284,854 + +0.0 1,284,891 - +1.4 1,284,891 - -0.0 1,285,005 + PS417_05730 0.23 +1.9 1,285,006 - PS417_05730 0.24 +0.4 1,285,006 - PS417_05730 0.24 +1.1 1,285,201 - PS417_05730 0.54 +0.8 1,285,271 + PS417_05730 0.65 +0.4 1,285,272 - PS417_05730 0.65 -0.9 1,285,431 - -3.0 1,285,455 + -0.4 1,285,456 - -2.4 1,285,456 - -1.0 1,285,456 - +0.2 1,285,757 + -1.1 1,285,787 + PS417_05735 0.56 -2.1 1,285,814 + PS417_05735 0.61 +1.7 1,285,815 - PS417_05735 0.61 -0.0 1,285,815 - PS417_05735 0.61 -2.5 1,285,817 - PS417_05735 0.62 +0.0 1,285,994 - -2.7 1,286,000 - +3.0 1,286,022 - +0.8 1,286,114 - +0.9 1,286,206 - PS417_05740 0.17 -0.3 1,286,212 + PS417_05740 0.18 +1.9 1,286,213 - PS417_05740 0.18 +1.0 1,286,238 - PS417_05740 0.22 +0.7 1,286,265 + PS417_05740 0.25 -0.7 1,286,270 - PS417_05740 0.26 -2.0 1,286,270 - PS417_05740 0.26 +1.0 1,286,335 + PS417_05740 0.34 +0.6 1,286,336 - PS417_05740 0.34 -0.2
Or see this region's nucleotide sequence