Strain Fitness in Pseudomonas simiae WCS417 around PS417_05335

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05330 and PS417_05335 overlap by 4 nucleotidesPS417_05335 and PS417_05340 are separated by 21 nucleotidesPS417_05340 and PS417_05345 are separated by 10 nucleotides PS417_05330: PS417_05330 - fimbrial assembly protein, at 1,183,717 to 1,186,242 _05330 PS417_05335: PS417_05335 - molecular chaperone, at 1,186,239 to 1,187,000 _05335 PS417_05340: PS417_05340 - fimbrial protein, at 1,187,022 to 1,187,594 _05340 PS417_05345: PS417_05345 - exotoxin, at 1,187,605 to 1,188,099 _05345 Position (kb) 1186 1187 1188Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1185.239 kb on - strand, within PS417_05330at 1185.239 kb on - strandat 1185.239 kb on - strand, within PS417_05330at 1185.286 kb on + strandat 1185.334 kb on + strand, within PS417_05330at 1185.355 kb on + strand, within PS417_05330at 1185.356 kb on - strand, within PS417_05330at 1185.356 kb on - strand, within PS417_05330at 1185.356 kb on - strand, within PS417_05330at 1185.486 kb on + strand, within PS417_05330at 1185.487 kb on - strand, within PS417_05330at 1185.487 kb on - strand, within PS417_05330at 1185.489 kb on + strand, within PS417_05330at 1185.489 kb on + strand, within PS417_05330at 1185.489 kb on + strand, within PS417_05330at 1185.489 kb on + strand, within PS417_05330at 1185.490 kb on - strand, within PS417_05330at 1185.490 kb on - strand, within PS417_05330at 1185.490 kb on - strand, within PS417_05330at 1185.490 kb on - strand, within PS417_05330at 1185.490 kb on - strand, within PS417_05330at 1185.529 kb on + strand, within PS417_05330at 1185.661 kb on - strand, within PS417_05330at 1186.033 kb on + strandat 1186.466 kb on - strand, within PS417_05335at 1186.567 kb on - strand, within PS417_05335at 1186.569 kb on + strand, within PS417_05335at 1186.569 kb on + strand, within PS417_05335at 1186.570 kb on - strand, within PS417_05335at 1186.644 kb on - strand, within PS417_05335at 1186.751 kb on + strand, within PS417_05335at 1186.758 kb on - strand, within PS417_05335at 1186.764 kb on + strand, within PS417_05335at 1186.764 kb on + strandat 1186.765 kb on - strand, within PS417_05335at 1186.765 kb on - strand, within PS417_05335at 1186.765 kb on - strand, within PS417_05335at 1186.765 kb on - strand, within PS417_05335at 1186.767 kb on + strand, within PS417_05335at 1186.767 kb on + strand, within PS417_05335at 1186.768 kb on - strand, within PS417_05335at 1186.768 kb on - strand, within PS417_05335at 1186.768 kb on - strand, within PS417_05335at 1186.879 kb on + strand, within PS417_05335at 1186.880 kb on - strand, within PS417_05335at 1186.906 kb on - strand, within PS417_05335at 1186.956 kb on - strandat 1186.999 kb on - strandat 1186.999 kb on - strandat 1187.748 kb on + strand, within PS417_05345at 1187.807 kb on - strand, within PS417_05345at 1187.824 kb on + strand, within PS417_05345at 1187.825 kb on - strand, within PS417_05345

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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1,185,239 - PS417_05330 0.60 -3.6
1,185,239 - -0.4
1,185,239 - PS417_05330 0.60 +0.5
1,185,286 + +0.2
1,185,334 + PS417_05330 0.64 -0.1
1,185,355 + PS417_05330 0.65 -2.1
1,185,356 - PS417_05330 0.65 +1.7
1,185,356 - PS417_05330 0.65 -0.0
1,185,356 - PS417_05330 0.65 +0.3
1,185,486 + PS417_05330 0.70 +0.5
1,185,487 - PS417_05330 0.70 -0.4
1,185,487 - PS417_05330 0.70 +1.3
1,185,489 + PS417_05330 0.70 +0.2
1,185,489 + PS417_05330 0.70 -1.6
1,185,489 + PS417_05330 0.70 -0.1
1,185,489 + PS417_05330 0.70 -2.0
1,185,490 - PS417_05330 0.70 +0.3
1,185,490 - PS417_05330 0.70 +0.7
1,185,490 - PS417_05330 0.70 +0.4
1,185,490 - PS417_05330 0.70 -4.1
1,185,490 - PS417_05330 0.70 +0.1
1,185,529 + PS417_05330 0.72 +0.2
1,185,661 - PS417_05330 0.77 -2.0
1,186,033 + -0.4
1,186,466 - PS417_05335 0.30 +1.7
1,186,567 - PS417_05335 0.43 +0.5
1,186,569 + PS417_05335 0.43 -1.7
1,186,569 + PS417_05335 0.43 -1.6
1,186,570 - PS417_05335 0.43 -1.1
1,186,644 - PS417_05335 0.53 -0.4
1,186,751 + PS417_05335 0.67 +0.3
1,186,758 - PS417_05335 0.68 +1.0
1,186,764 + PS417_05335 0.69 -0.9
1,186,764 + +0.2
1,186,765 - PS417_05335 0.69 -0.3
1,186,765 - PS417_05335 0.69 -0.0
1,186,765 - PS417_05335 0.69 -2.5
1,186,765 - PS417_05335 0.69 -0.4
1,186,767 + PS417_05335 0.69 -3.3
1,186,767 + PS417_05335 0.69 -2.4
1,186,768 - PS417_05335 0.69 -1.1
1,186,768 - PS417_05335 0.69 -0.0
1,186,768 - PS417_05335 0.69 -1.4
1,186,879 + PS417_05335 0.84 -0.8
1,186,880 - PS417_05335 0.84 +0.2
1,186,906 - PS417_05335 0.88 -0.3
1,186,956 - +4.0
1,186,999 - -1.2
1,186,999 - +0.2
1,187,748 + PS417_05345 0.29 -0.8
1,187,807 - PS417_05345 0.41 +0.6
1,187,824 + PS417_05345 0.44 +0.8
1,187,825 - PS417_05345 0.44 -3.5

Or see this region's nucleotide sequence