Strain Fitness in Pseudomonas simiae WCS417 around PS417_05180

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05175 and PS417_05180 are separated by 151 nucleotidesPS417_05180 and PS417_05185 are separated by 5 nucleotides PS417_05175: PS417_05175 - permease, at 1,148,557 to 1,149,636 _05175 PS417_05180: PS417_05180 - elongation factor 4, at 1,149,788 to 1,151,587 _05180 PS417_05185: PS417_05185 - signal peptidase, at 1,151,593 to 1,152,447 _05185 Position (kb) 1149 1150 1151 1152Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1149.647 kb on - strandat 1149.647 kb on - strandat 1152.445 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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1,149,647 - -0.5
1,149,647 - +2.6
1,152,445 + -2.9

Or see this region's nucleotide sequence