Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4677 and Echvi_4678 are separated by 9 nucleotides Echvi_4678 and Echvi_4679 overlap by 1 nucleotides
Echvi_4677: Echvi_4677 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 5,598,775 to 5,599,914
_4677
Echvi_4678: Echvi_4678 - ABC-type Fe3+-siderophore transport system, permease component, at 5,599,924 to 5,600,976
_4678
Echvi_4679: Echvi_4679 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 5,600,976 to 5,601,989
_4679
Position (kb)
5599
5600
5601 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5598.927 kb on - strand, within Echvi_4677 at 5598.973 kb on + strand, within Echvi_4677 at 5598.990 kb on + strand, within Echvi_4677 at 5598.990 kb on + strand, within Echvi_4677 at 5598.993 kb on + strand, within Echvi_4677 at 5598.994 kb on - strand, within Echvi_4677 at 5598.994 kb on - strand, within Echvi_4677 at 5599.043 kb on + strand, within Echvi_4677 at 5599.208 kb on - strand, within Echvi_4677 at 5599.208 kb on - strand, within Echvi_4677 at 5599.208 kb on - strand, within Echvi_4677 at 5599.233 kb on - strand, within Echvi_4677 at 5599.233 kb on - strand, within Echvi_4677 at 5599.244 kb on + strand, within Echvi_4677 at 5599.289 kb on + strand, within Echvi_4677 at 5599.290 kb on - strand, within Echvi_4677 at 5599.330 kb on + strand, within Echvi_4677 at 5599.331 kb on - strand, within Echvi_4677 at 5599.439 kb on - strand, within Echvi_4677 at 5599.449 kb on + strand, within Echvi_4677 at 5599.583 kb on - strand, within Echvi_4677 at 5599.585 kb on - strand, within Echvi_4677 at 5599.759 kb on + strand, within Echvi_4677 at 5599.762 kb on - strand, within Echvi_4677 at 5599.762 kb on - strand, within Echvi_4677 at 5599.801 kb on + strand at 5599.908 kb on - strand at 5600.235 kb on - strand, within Echvi_4678 at 5600.235 kb on - strand, within Echvi_4678 at 5600.253 kb on - strand, within Echvi_4678 at 5600.284 kb on - strand, within Echvi_4678 at 5600.453 kb on + strand, within Echvi_4678 at 5600.456 kb on + strand, within Echvi_4678 at 5600.457 kb on - strand, within Echvi_4678 at 5600.457 kb on - strand, within Echvi_4678 at 5600.457 kb on - strand, within Echvi_4678 at 5600.457 kb on - strand, within Echvi_4678 at 5600.493 kb on + strand, within Echvi_4678 at 5600.612 kb on - strand, within Echvi_4678 at 5600.613 kb on + strand, within Echvi_4678 at 5600.849 kb on + strand, within Echvi_4678 at 5600.850 kb on - strand, within Echvi_4678 at 5600.850 kb on - strand, within Echvi_4678 at 5600.961 kb on + strand at 5600.961 kb on + strand at 5600.962 kb on - strand at 5600.992 kb on - strand at 5601.180 kb on - strand, within Echvi_4679 at 5601.199 kb on + strand, within Echvi_4679 at 5601.289 kb on + strand, within Echvi_4679 at 5601.290 kb on - strand, within Echvi_4679 at 5601.292 kb on + strand, within Echvi_4679 at 5601.315 kb on - strand, within Echvi_4679 at 5601.580 kb on + strand, within Echvi_4679 at 5601.580 kb on + strand, within Echvi_4679 at 5601.707 kb on + strand, within Echvi_4679 at 5601.777 kb on - strand, within Echvi_4679 at 5601.863 kb on + strand, within Echvi_4679 at 5601.899 kb on + strand at 5601.914 kb on + strand at 5601.933 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 5,598,927 - Echvi_4677 0.13 -1.2 5,598,973 + Echvi_4677 0.17 -1.2 5,598,990 + Echvi_4677 0.19 +0.2 5,598,990 + Echvi_4677 0.19 -0.7 5,598,993 + Echvi_4677 0.19 +0.5 5,598,994 - Echvi_4677 0.19 -0.7 5,598,994 - Echvi_4677 0.19 -1.3 5,599,043 + Echvi_4677 0.24 -2.0 5,599,208 - Echvi_4677 0.38 +1.0 5,599,208 - Echvi_4677 0.38 -0.5 5,599,208 - Echvi_4677 0.38 -2.1 5,599,233 - Echvi_4677 0.40 -1.9 5,599,233 - Echvi_4677 0.40 -0.6 5,599,244 + Echvi_4677 0.41 -0.2 5,599,289 + Echvi_4677 0.45 -0.7 5,599,290 - Echvi_4677 0.45 +0.4 5,599,330 + Echvi_4677 0.49 -1.7 5,599,331 - Echvi_4677 0.49 -0.4 5,599,439 - Echvi_4677 0.58 +2.1 5,599,449 + Echvi_4677 0.59 +2.9 5,599,583 - Echvi_4677 0.71 +0.2 5,599,585 - Echvi_4677 0.71 +1.1 5,599,759 + Echvi_4677 0.86 -2.4 5,599,762 - Echvi_4677 0.87 -1.8 5,599,762 - Echvi_4677 0.87 +0.1 5,599,801 + +0.3 5,599,908 - -0.7 5,600,235 - Echvi_4678 0.30 +2.1 5,600,235 - Echvi_4678 0.30 -2.3 5,600,253 - Echvi_4678 0.31 -1.3 5,600,284 - Echvi_4678 0.34 -2.5 5,600,453 + Echvi_4678 0.50 -2.6 5,600,456 + Echvi_4678 0.51 +1.3 5,600,457 - Echvi_4678 0.51 +0.4 5,600,457 - Echvi_4678 0.51 -1.5 5,600,457 - Echvi_4678 0.51 -1.8 5,600,457 - Echvi_4678 0.51 -0.5 5,600,493 + Echvi_4678 0.54 -0.2 5,600,612 - Echvi_4678 0.65 -2.1 5,600,613 + Echvi_4678 0.65 -1.4 5,600,849 + Echvi_4678 0.88 -2.0 5,600,850 - Echvi_4678 0.88 +1.1 5,600,850 - Echvi_4678 0.88 -0.4 5,600,961 + -0.2 5,600,961 + -0.4 5,600,962 - -1.9 5,600,992 - -0.0 5,601,180 - Echvi_4679 0.20 -1.4 5,601,199 + Echvi_4679 0.22 -0.5 5,601,289 + Echvi_4679 0.31 -0.7 5,601,290 - Echvi_4679 0.31 +2.9 5,601,292 + Echvi_4679 0.31 -1.5 5,601,315 - Echvi_4679 0.33 -0.2 5,601,580 + Echvi_4679 0.60 -1.1 5,601,580 + Echvi_4679 0.60 -1.7 5,601,707 + Echvi_4679 0.72 -1.0 5,601,777 - Echvi_4679 0.79 -1.6 5,601,863 + Echvi_4679 0.87 -0.8 5,601,899 + -1.0 5,601,914 + +0.0 5,601,933 - +1.1
Or see this region's nucleotide sequence