Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4678

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4677 and Echvi_4678 are separated by 9 nucleotidesEchvi_4678 and Echvi_4679 overlap by 1 nucleotides Echvi_4677: Echvi_4677 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 5,598,775 to 5,599,914 _4677 Echvi_4678: Echvi_4678 - ABC-type Fe3+-siderophore transport system, permease component, at 5,599,924 to 5,600,976 _4678 Echvi_4679: Echvi_4679 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 5,600,976 to 5,601,989 _4679 Position (kb) 5599 5600 5601Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5598.927 kb on - strand, within Echvi_4677at 5598.973 kb on + strand, within Echvi_4677at 5598.990 kb on + strand, within Echvi_4677at 5598.990 kb on + strand, within Echvi_4677at 5598.993 kb on + strand, within Echvi_4677at 5598.994 kb on - strand, within Echvi_4677at 5598.994 kb on - strand, within Echvi_4677at 5599.043 kb on + strand, within Echvi_4677at 5599.208 kb on - strand, within Echvi_4677at 5599.208 kb on - strand, within Echvi_4677at 5599.208 kb on - strand, within Echvi_4677at 5599.233 kb on - strand, within Echvi_4677at 5599.233 kb on - strand, within Echvi_4677at 5599.244 kb on + strand, within Echvi_4677at 5599.289 kb on + strand, within Echvi_4677at 5599.290 kb on - strand, within Echvi_4677at 5599.330 kb on + strand, within Echvi_4677at 5599.331 kb on - strand, within Echvi_4677at 5599.439 kb on - strand, within Echvi_4677at 5599.449 kb on + strand, within Echvi_4677at 5599.583 kb on - strand, within Echvi_4677at 5599.585 kb on - strand, within Echvi_4677at 5599.759 kb on + strand, within Echvi_4677at 5599.762 kb on - strand, within Echvi_4677at 5599.762 kb on - strand, within Echvi_4677at 5599.801 kb on + strandat 5599.908 kb on - strandat 5600.235 kb on - strand, within Echvi_4678at 5600.235 kb on - strand, within Echvi_4678at 5600.253 kb on - strand, within Echvi_4678at 5600.284 kb on - strand, within Echvi_4678at 5600.453 kb on + strand, within Echvi_4678at 5600.456 kb on + strand, within Echvi_4678at 5600.457 kb on - strand, within Echvi_4678at 5600.457 kb on - strand, within Echvi_4678at 5600.457 kb on - strand, within Echvi_4678at 5600.457 kb on - strand, within Echvi_4678at 5600.493 kb on + strand, within Echvi_4678at 5600.612 kb on - strand, within Echvi_4678at 5600.613 kb on + strand, within Echvi_4678at 5600.849 kb on + strand, within Echvi_4678at 5600.850 kb on - strand, within Echvi_4678at 5600.850 kb on - strand, within Echvi_4678at 5600.961 kb on + strandat 5600.961 kb on + strandat 5600.962 kb on - strandat 5600.992 kb on - strandat 5601.180 kb on - strand, within Echvi_4679at 5601.199 kb on + strand, within Echvi_4679at 5601.289 kb on + strand, within Echvi_4679at 5601.290 kb on - strand, within Echvi_4679at 5601.292 kb on + strand, within Echvi_4679at 5601.315 kb on - strand, within Echvi_4679at 5601.580 kb on + strand, within Echvi_4679at 5601.580 kb on + strand, within Echvi_4679at 5601.707 kb on + strand, within Echvi_4679at 5601.777 kb on - strand, within Echvi_4679at 5601.863 kb on + strand, within Echvi_4679at 5601.899 kb on + strandat 5601.914 kb on + strandat 5601.933 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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5,598,927 - Echvi_4677 0.13 -1.2
5,598,973 + Echvi_4677 0.17 -1.2
5,598,990 + Echvi_4677 0.19 +0.2
5,598,990 + Echvi_4677 0.19 -0.7
5,598,993 + Echvi_4677 0.19 +0.5
5,598,994 - Echvi_4677 0.19 -0.7
5,598,994 - Echvi_4677 0.19 -1.3
5,599,043 + Echvi_4677 0.24 -2.0
5,599,208 - Echvi_4677 0.38 +1.0
5,599,208 - Echvi_4677 0.38 -0.5
5,599,208 - Echvi_4677 0.38 -2.1
5,599,233 - Echvi_4677 0.40 -1.9
5,599,233 - Echvi_4677 0.40 -0.6
5,599,244 + Echvi_4677 0.41 -0.2
5,599,289 + Echvi_4677 0.45 -0.7
5,599,290 - Echvi_4677 0.45 +0.4
5,599,330 + Echvi_4677 0.49 -1.7
5,599,331 - Echvi_4677 0.49 -0.4
5,599,439 - Echvi_4677 0.58 +2.1
5,599,449 + Echvi_4677 0.59 +2.9
5,599,583 - Echvi_4677 0.71 +0.2
5,599,585 - Echvi_4677 0.71 +1.1
5,599,759 + Echvi_4677 0.86 -2.4
5,599,762 - Echvi_4677 0.87 -1.8
5,599,762 - Echvi_4677 0.87 +0.1
5,599,801 + +0.3
5,599,908 - -0.7
5,600,235 - Echvi_4678 0.30 +2.1
5,600,235 - Echvi_4678 0.30 -2.3
5,600,253 - Echvi_4678 0.31 -1.3
5,600,284 - Echvi_4678 0.34 -2.5
5,600,453 + Echvi_4678 0.50 -2.6
5,600,456 + Echvi_4678 0.51 +1.3
5,600,457 - Echvi_4678 0.51 +0.4
5,600,457 - Echvi_4678 0.51 -1.5
5,600,457 - Echvi_4678 0.51 -1.8
5,600,457 - Echvi_4678 0.51 -0.5
5,600,493 + Echvi_4678 0.54 -0.2
5,600,612 - Echvi_4678 0.65 -2.1
5,600,613 + Echvi_4678 0.65 -1.4
5,600,849 + Echvi_4678 0.88 -2.0
5,600,850 - Echvi_4678 0.88 +1.1
5,600,850 - Echvi_4678 0.88 -0.4
5,600,961 + -0.2
5,600,961 + -0.4
5,600,962 - -1.9
5,600,992 - -0.0
5,601,180 - Echvi_4679 0.20 -1.4
5,601,199 + Echvi_4679 0.22 -0.5
5,601,289 + Echvi_4679 0.31 -0.7
5,601,290 - Echvi_4679 0.31 +2.9
5,601,292 + Echvi_4679 0.31 -1.5
5,601,315 - Echvi_4679 0.33 -0.2
5,601,580 + Echvi_4679 0.60 -1.1
5,601,580 + Echvi_4679 0.60 -1.7
5,601,707 + Echvi_4679 0.72 -1.0
5,601,777 - Echvi_4679 0.79 -1.6
5,601,863 + Echvi_4679 0.87 -0.8
5,601,899 + -1.0
5,601,914 + +0.0
5,601,933 - +1.1

Or see this region's nucleotide sequence