Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4604 and Echvi_4605 overlap by 4 nucleotides Echvi_4605 and Echvi_4606 are separated by 3 nucleotides Echvi_4606 and Echvi_4607 are separated by 119 nucleotides Echvi_4607 and Echvi_4608 overlap by 1 nucleotides
Echvi_4604: Echvi_4604 - Threonine aldolase, at 5,513,275 to 5,514,282
_4604
Echvi_4605: Echvi_4605 - Glycerophosphoryl diester phosphodiesterase, at 5,514,279 to 5,515,181
_4605
Echvi_4606: Echvi_4606 - Protein of unknown function (DUF2721)., at 5,515,185 to 5,515,649
_4606
Echvi_4607: Echvi_4607 - Uncharacterized protein conserved in bacteria, at 5,515,769 to 5,516,602
_4607
Echvi_4608: Echvi_4608 - RNA polymerase sigma factor, sigma-70 family, at 5,516,602 to 5,517,135
_4608
Position (kb) 5515
5516 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 5514.205 kb on + strand at 5514.244 kb on - strand at 5514.267 kb on + strand at 5514.274 kb on + strand at 5514.275 kb on - strand at 5514.275 kb on - strand at 5514.275 kb on - strand at 5514.417 kb on + strand, within Echvi_4605 at 5514.417 kb on + strand, within Echvi_4605 at 5514.762 kb on - strand, within Echvi_4605 at 5514.818 kb on - strand, within Echvi_4605 at 5514.852 kb on - strand, within Echvi_4605 at 5514.866 kb on + strand, within Echvi_4605 at 5514.867 kb on - strand, within Echvi_4605 at 5514.945 kb on + strand, within Echvi_4605 at 5514.946 kb on - strand, within Echvi_4605 at 5514.946 kb on - strand, within Echvi_4605 at 5514.946 kb on - strand, within Echvi_4605 at 5514.949 kb on + strand, within Echvi_4605 at 5515.076 kb on + strand, within Echvi_4605 at 5515.186 kb on + strand at 5515.187 kb on - strand at 5515.193 kb on + strand at 5515.276 kb on - strand, within Echvi_4606 at 5515.361 kb on + strand, within Echvi_4606 at 5515.361 kb on + strand, within Echvi_4606 at 5515.362 kb on - strand, within Echvi_4606 at 5515.370 kb on + strand, within Echvi_4606 at 5515.396 kb on + strand, within Echvi_4606 at 5515.410 kb on - strand, within Echvi_4606 at 5515.456 kb on + strand, within Echvi_4606 at 5515.457 kb on - strand, within Echvi_4606 at 5515.584 kb on - strand, within Echvi_4606 at 5515.584 kb on - strand, within Echvi_4606 at 5515.586 kb on - strand, within Echvi_4606 at 5515.650 kb on - strand at 5515.672 kb on + strand at 5515.698 kb on + strand at 5515.743 kb on + strand at 5515.770 kb on + strand at 5516.003 kb on + strand, within Echvi_4607 at 5516.092 kb on - strand, within Echvi_4607 at 5516.092 kb on - strand, within Echvi_4607 at 5516.149 kb on + strand, within Echvi_4607 at 5516.174 kb on - strand, within Echvi_4607 at 5516.176 kb on + strand, within Echvi_4607 at 5516.176 kb on + strand, within Echvi_4607 at 5516.176 kb on + strand, within Echvi_4607 at 5516.176 kb on + strand, within Echvi_4607 at 5516.177 kb on - strand, within Echvi_4607 at 5516.177 kb on - strand, within Echvi_4607 at 5516.218 kb on - strand, within Echvi_4607 at 5516.218 kb on - strand, within Echvi_4607 at 5516.220 kb on + strand, within Echvi_4607 at 5516.221 kb on - strand, within Echvi_4607 at 5516.221 kb on - strand, within Echvi_4607 at 5516.221 kb on - strand, within Echvi_4607 at 5516.309 kb on + strand, within Echvi_4607 at 5516.310 kb on - strand, within Echvi_4607 at 5516.412 kb on - strand, within Echvi_4607 at 5516.573 kb on - strand at 5516.587 kb on - strand at 5516.614 kb on - strand at 5516.614 kb on - strand at 5516.616 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 5,514,205 + +2.3 5,514,244 - -1.8 5,514,267 + +0.0 5,514,274 + -0.3 5,514,275 - -2.8 5,514,275 - +0.1 5,514,275 - -0.4 5,514,417 + Echvi_4605 0.15 +0.4 5,514,417 + Echvi_4605 0.15 -0.1 5,514,762 - Echvi_4605 0.53 +0.5 5,514,818 - Echvi_4605 0.60 +0.5 5,514,852 - Echvi_4605 0.63 -1.5 5,514,866 + Echvi_4605 0.65 +1.2 5,514,867 - Echvi_4605 0.65 +0.3 5,514,945 + Echvi_4605 0.74 -1.0 5,514,946 - Echvi_4605 0.74 +1.1 5,514,946 - Echvi_4605 0.74 -2.3 5,514,946 - Echvi_4605 0.74 +1.4 5,514,949 + Echvi_4605 0.74 -0.1 5,515,076 + Echvi_4605 0.88 -2.0 5,515,186 + -1.0 5,515,187 - +3.6 5,515,193 + +2.0 5,515,276 - Echvi_4606 0.20 -0.1 5,515,361 + Echvi_4606 0.38 -2.8 5,515,361 + Echvi_4606 0.38 +0.5 5,515,362 - Echvi_4606 0.38 -1.9 5,515,370 + Echvi_4606 0.40 -2.1 5,515,396 + Echvi_4606 0.45 +0.6 5,515,410 - Echvi_4606 0.48 -0.1 5,515,456 + Echvi_4606 0.58 -3.1 5,515,457 - Echvi_4606 0.58 -1.9 5,515,584 - Echvi_4606 0.86 -4.0 5,515,584 - Echvi_4606 0.86 -1.6 5,515,586 - Echvi_4606 0.86 +1.1 5,515,650 - +0.5 5,515,672 + -0.5 5,515,698 + +0.5 5,515,743 + +0.6 5,515,770 + -2.1 5,516,003 + Echvi_4607 0.28 -2.9 5,516,092 - Echvi_4607 0.39 -2.4 5,516,092 - Echvi_4607 0.39 -2.3 5,516,149 + Echvi_4607 0.46 -2.8 5,516,174 - Echvi_4607 0.49 -3.1 5,516,176 + Echvi_4607 0.49 -1.4 5,516,176 + Echvi_4607 0.49 -4.8 5,516,176 + Echvi_4607 0.49 -2.4 5,516,176 + Echvi_4607 0.49 -3.3 5,516,177 - Echvi_4607 0.49 -3.5 5,516,177 - Echvi_4607 0.49 -0.4 5,516,218 - Echvi_4607 0.54 -0.7 5,516,218 - Echvi_4607 0.54 -4.1 5,516,220 + Echvi_4607 0.54 -0.5 5,516,221 - Echvi_4607 0.54 -1.8 5,516,221 - Echvi_4607 0.54 -3.3 5,516,221 - Echvi_4607 0.54 -2.4 5,516,309 + Echvi_4607 0.65 -2.1 5,516,310 - Echvi_4607 0.65 -3.1 5,516,412 - Echvi_4607 0.77 -0.9 5,516,573 - -4.0 5,516,587 - -0.2 5,516,614 - -0.2 5,516,614 - +0.2 5,516,616 + +0.3
Or see this region's nucleotide sequence