Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4487 and Echvi_4488 are separated by 56 nucleotides Echvi_4488 and Echvi_4489 overlap by 1 nucleotides Echvi_4489 and Echvi_4490 are separated by 169 nucleotides Echvi_4490 and Echvi_4491 are separated by 448 nucleotides
Echvi_4487: Echvi_4487 - Sugar-specific transcriptional regulator TrmB., at 5,365,831 to 5,365,974
_4487
Echvi_4488: Echvi_4488 - hypothetical protein, at 5,366,031 to 5,366,318
_4488
Echvi_4489: Echvi_4489 - Transposase and inactivated derivatives, at 5,366,318 to 5,366,659
_4489
Echvi_4490: Echvi_4490 - Transposase and inactivated derivatives, at 5,366,829 to 5,368,379
_4490
Echvi_4491: Echvi_4491 - hypothetical protein, at 5,368,828 to 5,369,142
_4491
Position (kb) 5366
5367
5368
5369 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5365.829 kb on + strand at 5365.829 kb on + strand at 5365.830 kb on - strand at 5365.930 kb on + strand, within Echvi_4487 at 5365.930 kb on + strand, within Echvi_4487 at 5365.930 kb on + strand, within Echvi_4487 at 5365.931 kb on - strand, within Echvi_4487 at 5365.931 kb on - strand, within Echvi_4487 at 5365.961 kb on + strand at 5365.961 kb on + strand at 5365.961 kb on + strand at 5365.962 kb on - strand at 5365.962 kb on - strand at 5365.962 kb on - strand at 5365.971 kb on - strand at 5365.972 kb on + strand at 5365.972 kb on + strand at 5365.973 kb on - strand at 5365.973 kb on - strand at 5365.989 kb on - strand at 5366.006 kb on + strand at 5366.007 kb on - strand at 5366.030 kb on + strand at 5366.030 kb on + strand at 5366.031 kb on - strand at 5366.139 kb on + strand, within Echvi_4488 at 5366.139 kb on + strand, within Echvi_4488 at 5366.192 kb on - strand, within Echvi_4488 at 5366.201 kb on + strand, within Echvi_4488 at 5366.202 kb on - strand, within Echvi_4488 at 5366.313 kb on + strand at 5366.313 kb on + strand at 5366.345 kb on + strand at 5366.345 kb on + strand at 5366.354 kb on + strand, within Echvi_4489 at 5366.646 kb on - strand at 5366.647 kb on + strand at 5366.958 kb on + strand at 5367.116 kb on - strand, within Echvi_4490 at 5367.116 kb on - strand, within Echvi_4490 at 5367.116 kb on - strand, within Echvi_4490 at 5367.262 kb on - strand, within Echvi_4490 at 5367.262 kb on - strand, within Echvi_4490 at 5367.263 kb on + strand, within Echvi_4490 at 5367.276 kb on + strand, within Echvi_4490 at 5367.276 kb on + strand, within Echvi_4490 at 5367.276 kb on + strand, within Echvi_4490 at 5367.276 kb on + strand, within Echvi_4490 at 5367.277 kb on - strand, within Echvi_4490 at 5367.278 kb on + strand, within Echvi_4490 at 5367.292 kb on - strand, within Echvi_4490 at 5367.300 kb on + strand, within Echvi_4490 at 5367.414 kb on - strand, within Echvi_4490 at 5367.424 kb on - strand, within Echvi_4490 at 5367.434 kb on + strand, within Echvi_4490 at 5367.435 kb on - strand, within Echvi_4490 at 5367.533 kb on - strand, within Echvi_4490 at 5367.543 kb on + strand, within Echvi_4490 at 5367.580 kb on - strand, within Echvi_4490 at 5367.648 kb on + strand, within Echvi_4490 at 5367.649 kb on - strand, within Echvi_4490 at 5367.651 kb on + strand, within Echvi_4490 at 5367.659 kb on - strand, within Echvi_4490 at 5367.660 kb on + strand, within Echvi_4490 at 5367.660 kb on + strand, within Echvi_4490 at 5367.660 kb on + strand, within Echvi_4490 at 5367.661 kb on - strand, within Echvi_4490 at 5367.666 kb on - strand, within Echvi_4490 at 5367.686 kb on - strand, within Echvi_4490 at 5367.789 kb on + strand, within Echvi_4490 at 5367.800 kb on + strand, within Echvi_4490 at 5367.912 kb on + strand, within Echvi_4490 at 5368.085 kb on + strand, within Echvi_4490 at 5368.085 kb on + strand, within Echvi_4490 at 5368.086 kb on - strand, within Echvi_4490 at 5368.086 kb on - strand, within Echvi_4490 at 5368.086 kb on - strand, within Echvi_4490 at 5368.108 kb on - strand, within Echvi_4490 at 5368.108 kb on - strand, within Echvi_4490 at 5368.188 kb on + strand, within Echvi_4490 at 5368.189 kb on - strand, within Echvi_4490 at 5368.236 kb on + strand at 5368.237 kb on - strand at 5368.261 kb on + strand at 5368.262 kb on - strand at 5368.262 kb on - strand at 5368.307 kb on + strand at 5368.308 kb on - strand at 5368.325 kb on + strand at 5368.344 kb on + strand at 5368.381 kb on - strand at 5368.488 kb on + strand at 5368.489 kb on - strand at 5368.648 kb on + strand at 5368.648 kb on + strand at 5368.648 kb on + strand at 5368.746 kb on - strand at 5368.750 kb on - strand at 5368.754 kb on + strand at 5368.754 kb on + strand at 5368.759 kb on + strand at 5368.792 kb on - strand at 5368.805 kb on - strand at 5368.805 kb on - strand at 5368.805 kb on - strand at 5368.816 kb on + strand at 5368.816 kb on + strand at 5368.817 kb on - strand at 5368.817 kb on - strand at 5368.817 kb on - strand at 5368.820 kb on + strand at 5368.820 kb on + strand at 5368.848 kb on + strand at 5368.855 kb on + strand at 5368.987 kb on + strand, within Echvi_4491 at 5368.987 kb on + strand, within Echvi_4491 at 5368.988 kb on - strand, within Echvi_4491 at 5368.991 kb on - strand, within Echvi_4491 at 5369.008 kb on - strand, within Echvi_4491 at 5369.036 kb on - strand, within Echvi_4491 at 5369.036 kb on - strand, within Echvi_4491 at 5369.043 kb on + strand, within Echvi_4491 at 5369.097 kb on + strand, within Echvi_4491 at 5369.097 kb on + strand, within Echvi_4491 at 5369.098 kb on - strand, within Echvi_4491 at 5369.098 kb on - strand, within Echvi_4491 at 5369.150 kb on - strand at 5369.182 kb on + strand at 5369.185 kb on - strand at 5369.252 kb on - strand at 5369.252 kb on - strand at 5369.253 kb on + strand at 5369.253 kb on + strand at 5369.261 kb on - strand at 5369.304 kb on + strand at 5369.309 kb on - strand at 5369.309 kb on - strand at 5369.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 5,365,829 + -0.9 5,365,829 + +0.5 5,365,830 - +0.3 5,365,930 + Echvi_4487 0.69 -0.0 5,365,930 + Echvi_4487 0.69 -0.3 5,365,930 + Echvi_4487 0.69 +1.2 5,365,931 - Echvi_4487 0.69 +0.7 5,365,931 - Echvi_4487 0.69 -1.6 5,365,961 + +0.8 5,365,961 + +0.7 5,365,961 + +0.4 5,365,962 - -2.7 5,365,962 - -0.2 5,365,962 - +0.0 5,365,971 - +0.0 5,365,972 + -2.9 5,365,972 + -0.0 5,365,973 - +0.8 5,365,973 - +0.5 5,365,989 - -0.8 5,366,006 + +0.4 5,366,007 - +0.0 5,366,030 + -0.5 5,366,030 + -1.1 5,366,031 - +0.4 5,366,139 + Echvi_4488 0.38 -0.3 5,366,139 + Echvi_4488 0.38 -0.4 5,366,192 - Echvi_4488 0.56 -1.1 5,366,201 + Echvi_4488 0.59 +0.5 5,366,202 - Echvi_4488 0.59 +1.4 5,366,313 + -0.9 5,366,313 + +0.3 5,366,345 + +1.2 5,366,345 + +0.1 5,366,354 + Echvi_4489 0.11 +0.4 5,366,646 - +1.1 5,366,647 + +0.0 5,366,958 + -0.1 5,367,116 - Echvi_4490 0.19 +0.1 5,367,116 - Echvi_4490 0.19 -0.7 5,367,116 - Echvi_4490 0.19 +0.5 5,367,262 - Echvi_4490 0.28 +0.3 5,367,262 - Echvi_4490 0.28 -0.0 5,367,263 + Echvi_4490 0.28 +0.2 5,367,276 + Echvi_4490 0.29 -0.2 5,367,276 + Echvi_4490 0.29 -0.6 5,367,276 + Echvi_4490 0.29 -0.9 5,367,276 + Echvi_4490 0.29 +0.9 5,367,277 - Echvi_4490 0.29 -0.5 5,367,278 + Echvi_4490 0.29 +0.1 5,367,292 - Echvi_4490 0.30 -1.8 5,367,300 + Echvi_4490 0.30 +0.4 5,367,414 - Echvi_4490 0.38 +0.1 5,367,424 - Echvi_4490 0.38 -3.0 5,367,434 + Echvi_4490 0.39 +1.4 5,367,435 - Echvi_4490 0.39 -2.2 5,367,533 - Echvi_4490 0.45 -1.7 5,367,543 + Echvi_4490 0.46 -0.5 5,367,580 - Echvi_4490 0.48 -1.1 5,367,648 + Echvi_4490 0.53 -0.0 5,367,649 - Echvi_4490 0.53 +0.3 5,367,651 + Echvi_4490 0.53 -2.5 5,367,659 - Echvi_4490 0.54 -1.7 5,367,660 + Echvi_4490 0.54 +0.9 5,367,660 + Echvi_4490 0.54 -0.4 5,367,660 + Echvi_4490 0.54 -3.2 5,367,661 - Echvi_4490 0.54 -1.9 5,367,666 - Echvi_4490 0.54 -1.3 5,367,686 - Echvi_4490 0.55 -1.1 5,367,789 + Echvi_4490 0.62 -2.6 5,367,800 + Echvi_4490 0.63 +0.2 5,367,912 + Echvi_4490 0.70 -0.7 5,368,085 + Echvi_4490 0.81 -0.6 5,368,085 + Echvi_4490 0.81 +0.4 5,368,086 - Echvi_4490 0.81 +0.2 5,368,086 - Echvi_4490 0.81 -3.3 5,368,086 - Echvi_4490 0.81 +0.1 5,368,108 - Echvi_4490 0.82 -1.2 5,368,108 - Echvi_4490 0.82 -0.2 5,368,188 + Echvi_4490 0.88 +0.7 5,368,189 - Echvi_4490 0.88 -0.0 5,368,236 + +1.3 5,368,237 - +0.2 5,368,261 + -2.7 5,368,262 - +0.1 5,368,262 - -1.6 5,368,307 + +1.5 5,368,308 - -1.2 5,368,325 + -0.5 5,368,344 + -0.5 5,368,381 - +1.2 5,368,488 + -2.0 5,368,489 - +2.4 5,368,648 + +0.6 5,368,648 + -0.2 5,368,648 + -0.8 5,368,746 - +0.6 5,368,750 - +0.2 5,368,754 + -1.5 5,368,754 + -0.2 5,368,759 + +0.4 5,368,792 - -1.7 5,368,805 - +1.1 5,368,805 - -1.1 5,368,805 - +2.1 5,368,816 + -1.7 5,368,816 + +0.7 5,368,817 - +0.3 5,368,817 - -0.6 5,368,817 - +0.0 5,368,820 + -1.1 5,368,820 + +0.6 5,368,848 + -2.8 5,368,855 + +0.7 5,368,987 + Echvi_4491 0.50 +0.1 5,368,987 + Echvi_4491 0.50 +0.3 5,368,988 - Echvi_4491 0.51 +2.1 5,368,991 - Echvi_4491 0.52 -1.1 5,369,008 - Echvi_4491 0.57 -0.4 5,369,036 - Echvi_4491 0.66 -2.0 5,369,036 - Echvi_4491 0.66 -0.3 5,369,043 + Echvi_4491 0.68 -0.6 5,369,097 + Echvi_4491 0.85 +0.9 5,369,097 + Echvi_4491 0.85 -1.2 5,369,098 - Echvi_4491 0.86 +0.1 5,369,098 - Echvi_4491 0.86 +0.4 5,369,150 - -0.9 5,369,182 + -1.9 5,369,185 - -0.3 5,369,252 - -0.4 5,369,252 - -0.5 5,369,253 + -1.4 5,369,253 + +0.9 5,369,261 - -2.8 5,369,304 + -0.5 5,369,309 - +0.0 5,369,309 - +1.1 5,369,309 - +0.8
Or see this region's nucleotide sequence