Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4269 and Echvi_4270 are separated by 17 nucleotides Echvi_4270 and Echvi_4271 are separated by 9 nucleotides Echvi_4271 and Echvi_4272 overlap by 4 nucleotides Echvi_4272 and Echvi_4273 are separated by 6 nucleotides Echvi_4273 and Echvi_4274 are separated by 9 nucleotides Echvi_4274 and Echvi_4275 are separated by 112 nucleotides
Echvi_4269: Echvi_4269 - Uncharacterized protein conserved in bacteria, at 5,121,864 to 5,122,442
_4269
Echvi_4270: Echvi_4270 - hypothetical protein, at 5,122,460 to 5,122,813
_4270
Echvi_4271: Echvi_4271 - Uncharacterized conserved protein, at 5,122,823 to 5,123,179
_4271
Echvi_4272: Echvi_4272 - hypothetical protein, at 5,123,176 to 5,123,559
_4272
Echvi_4273: Echvi_4273 - Uncharacterized conserved protein, at 5,123,566 to 5,124,030
_4273
Echvi_4274: Echvi_4274 - Predicted transcriptional regulators, at 5,124,040 to 5,124,360
_4274
Echvi_4275: Echvi_4275 - hypothetical protein, at 5,124,473 to 5,124,901
_4275
Position (kb)
5123
5124 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5122.291 kb on - strand, within Echvi_4269 at 5122.419 kb on + strand at 5122.485 kb on - strand at 5122.519 kb on + strand, within Echvi_4270 at 5122.527 kb on + strand, within Echvi_4270 at 5122.532 kb on - strand, within Echvi_4270 at 5122.560 kb on - strand, within Echvi_4270 at 5122.579 kb on + strand, within Echvi_4270 at 5122.583 kb on + strand, within Echvi_4270 at 5122.583 kb on + strand, within Echvi_4270 at 5122.628 kb on + strand, within Echvi_4270 at 5122.701 kb on + strand, within Echvi_4270 at 5122.704 kb on + strand, within Echvi_4270 at 5122.704 kb on + strand, within Echvi_4270 at 5122.719 kb on - strand, within Echvi_4270 at 5122.719 kb on - strand, within Echvi_4270 at 5122.719 kb on - strand, within Echvi_4270 at 5122.725 kb on - strand, within Echvi_4270 at 5122.725 kb on - strand, within Echvi_4270 at 5122.783 kb on + strand at 5122.790 kb on - strand at 5122.790 kb on - strand at 5122.802 kb on + strand at 5122.802 kb on + strand at 5122.803 kb on - strand at 5122.825 kb on - strand at 5122.825 kb on - strand at 5122.826 kb on + strand at 5122.826 kb on + strand at 5122.854 kb on - strand at 5122.897 kb on + strand, within Echvi_4271 at 5122.926 kb on + strand, within Echvi_4271 at 5123.026 kb on + strand, within Echvi_4271 at 5123.026 kb on + strand, within Echvi_4271 at 5123.027 kb on - strand, within Echvi_4271 at 5123.027 kb on - strand, within Echvi_4271 at 5123.028 kb on + strand, within Echvi_4271 at 5123.028 kb on + strand, within Echvi_4271 at 5123.028 kb on + strand, within Echvi_4271 at 5123.028 kb on + strand, within Echvi_4271 at 5123.029 kb on - strand, within Echvi_4271 at 5123.029 kb on - strand, within Echvi_4271 at 5123.029 kb on - strand, within Echvi_4271 at 5123.034 kb on + strand, within Echvi_4271 at 5123.035 kb on - strand, within Echvi_4271 at 5123.038 kb on + strand, within Echvi_4271 at 5123.080 kb on + strand, within Echvi_4271 at 5123.105 kb on - strand, within Echvi_4271 at 5123.112 kb on - strand, within Echvi_4271 at 5123.138 kb on - strand, within Echvi_4271 at 5123.154 kb on - strand at 5123.240 kb on - strand, within Echvi_4272 at 5123.244 kb on + strand, within Echvi_4272 at 5123.268 kb on + strand, within Echvi_4272 at 5123.274 kb on + strand, within Echvi_4272 at 5123.275 kb on - strand, within Echvi_4272 at 5123.305 kb on - strand, within Echvi_4272 at 5123.305 kb on - strand, within Echvi_4272 at 5123.305 kb on - strand, within Echvi_4272 at 5123.336 kb on + strand, within Echvi_4272 at 5123.371 kb on - strand, within Echvi_4272 at 5123.371 kb on - strand, within Echvi_4272 at 5123.437 kb on + strand, within Echvi_4272 at 5123.437 kb on + strand, within Echvi_4272 at 5123.438 kb on - strand, within Echvi_4272 at 5123.438 kb on - strand, within Echvi_4272 at 5123.449 kb on - strand, within Echvi_4272 at 5123.523 kb on + strand at 5123.523 kb on + strand at 5123.523 kb on + strand at 5123.524 kb on - strand at 5123.527 kb on + strand at 5123.528 kb on - strand at 5123.567 kb on + strand at 5123.686 kb on + strand, within Echvi_4273 at 5123.737 kb on + strand, within Echvi_4273 at 5123.737 kb on + strand, within Echvi_4273 at 5123.799 kb on + strand, within Echvi_4273 at 5123.799 kb on + strand, within Echvi_4273 at 5123.821 kb on - strand, within Echvi_4273 at 5123.827 kb on + strand, within Echvi_4273 at 5123.858 kb on + strand, within Echvi_4273 at 5123.859 kb on - strand, within Echvi_4273 at 5123.859 kb on - strand, within Echvi_4273 at 5123.898 kb on + strand, within Echvi_4273 at 5123.934 kb on - strand, within Echvi_4273 at 5123.934 kb on - strand, within Echvi_4273 at 5123.943 kb on - strand, within Echvi_4273 at 5123.944 kb on + strand, within Echvi_4273 at 5123.974 kb on + strand, within Echvi_4273 at 5123.975 kb on - strand, within Echvi_4273 at 5123.976 kb on + strand, within Echvi_4273 at 5123.976 kb on + strand, within Echvi_4273 at 5123.976 kb on + strand, within Echvi_4273 at 5123.977 kb on - strand, within Echvi_4273 at 5124.030 kb on + strand at 5124.030 kb on + strand at 5124.030 kb on + strand at 5124.031 kb on - strand at 5124.041 kb on + strand at 5124.065 kb on - strand at 5124.127 kb on + strand, within Echvi_4274 at 5124.161 kb on + strand, within Echvi_4274 at 5124.300 kb on + strand, within Echvi_4274 at 5124.304 kb on + strand, within Echvi_4274 at 5124.420 kb on + strand at 5124.420 kb on + strand at 5124.425 kb on + strand at 5124.425 kb on + strand at 5124.425 kb on + strand at 5124.425 kb on + strand at 5124.426 kb on - strand at 5124.426 kb on - strand at 5124.449 kb on + strand at 5124.556 kb on + strand, within Echvi_4275
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 5,122,291 - Echvi_4269 0.74 +1.7 5,122,419 + -1.0 5,122,485 - +3.5 5,122,519 + Echvi_4270 0.17 +1.8 5,122,527 + Echvi_4270 0.19 +1.0 5,122,532 - Echvi_4270 0.20 -1.3 5,122,560 - Echvi_4270 0.28 +1.2 5,122,579 + Echvi_4270 0.34 +1.0 5,122,583 + Echvi_4270 0.35 -0.8 5,122,583 + Echvi_4270 0.35 +0.8 5,122,628 + Echvi_4270 0.47 +0.1 5,122,701 + Echvi_4270 0.68 -0.5 5,122,704 + Echvi_4270 0.69 -0.0 5,122,704 + Echvi_4270 0.69 +0.1 5,122,719 - Echvi_4270 0.73 +0.5 5,122,719 - Echvi_4270 0.73 -0.9 5,122,719 - Echvi_4270 0.73 -0.5 5,122,725 - Echvi_4270 0.75 -0.8 5,122,725 - Echvi_4270 0.75 +0.3 5,122,783 + -0.3 5,122,790 - -2.1 5,122,790 - -0.3 5,122,802 + +2.1 5,122,802 + +1.2 5,122,803 - -0.8 5,122,825 - -0.6 5,122,825 - +1.0 5,122,826 + -0.5 5,122,826 + +0.8 5,122,854 - -2.0 5,122,897 + Echvi_4271 0.21 -2.3 5,122,926 + Echvi_4271 0.29 +0.7 5,123,026 + Echvi_4271 0.57 -1.0 5,123,026 + Echvi_4271 0.57 +0.3 5,123,027 - Echvi_4271 0.57 -1.4 5,123,027 - Echvi_4271 0.57 +0.3 5,123,028 + Echvi_4271 0.57 +0.7 5,123,028 + Echvi_4271 0.57 +0.4 5,123,028 + Echvi_4271 0.57 -2.5 5,123,028 + Echvi_4271 0.57 -1.6 5,123,029 - Echvi_4271 0.58 -1.5 5,123,029 - Echvi_4271 0.58 -0.1 5,123,029 - Echvi_4271 0.58 +1.7 5,123,034 + Echvi_4271 0.59 +0.1 5,123,035 - Echvi_4271 0.59 -0.7 5,123,038 + Echvi_4271 0.60 +0.9 5,123,080 + Echvi_4271 0.72 +0.1 5,123,105 - Echvi_4271 0.79 +0.9 5,123,112 - Echvi_4271 0.81 +0.5 5,123,138 - Echvi_4271 0.88 -1.9 5,123,154 - -0.4 5,123,240 - Echvi_4272 0.17 -0.5 5,123,244 + Echvi_4272 0.18 -0.6 5,123,268 + Echvi_4272 0.24 -2.3 5,123,274 + Echvi_4272 0.26 -0.5 5,123,275 - Echvi_4272 0.26 -2.1 5,123,305 - Echvi_4272 0.34 +0.3 5,123,305 - Echvi_4272 0.34 -0.1 5,123,305 - Echvi_4272 0.34 -0.8 5,123,336 + Echvi_4272 0.42 -2.3 5,123,371 - Echvi_4272 0.51 +0.5 5,123,371 - Echvi_4272 0.51 -1.6 5,123,437 + Echvi_4272 0.68 -1.1 5,123,437 + Echvi_4272 0.68 -0.3 5,123,438 - Echvi_4272 0.68 -0.6 5,123,438 - Echvi_4272 0.68 +3.1 5,123,449 - Echvi_4272 0.71 -0.8 5,123,523 + +1.1 5,123,523 + -0.8 5,123,523 + +0.5 5,123,524 - +1.0 5,123,527 + +2.1 5,123,528 - -0.8 5,123,567 + -0.4 5,123,686 + Echvi_4273 0.26 +0.7 5,123,737 + Echvi_4273 0.37 -2.9 5,123,737 + Echvi_4273 0.37 -0.5 5,123,799 + Echvi_4273 0.50 -2.1 5,123,799 + Echvi_4273 0.50 +2.1 5,123,821 - Echvi_4273 0.55 -0.9 5,123,827 + Echvi_4273 0.56 +0.1 5,123,858 + Echvi_4273 0.63 +0.7 5,123,859 - Echvi_4273 0.63 -0.9 5,123,859 - Echvi_4273 0.63 +0.6 5,123,898 + Echvi_4273 0.71 +0.2 5,123,934 - Echvi_4273 0.79 -3.1 5,123,934 - Echvi_4273 0.79 +1.7 5,123,943 - Echvi_4273 0.81 +1.7 5,123,944 + Echvi_4273 0.81 +0.2 5,123,974 + Echvi_4273 0.88 +0.4 5,123,975 - Echvi_4273 0.88 +0.2 5,123,976 + Echvi_4273 0.88 +2.7 5,123,976 + Echvi_4273 0.88 +1.0 5,123,976 + Echvi_4273 0.88 +1.2 5,123,977 - Echvi_4273 0.88 -0.0 5,124,030 + +0.5 5,124,030 + +1.6 5,124,030 + +0.3 5,124,031 - -0.4 5,124,041 + -3.0 5,124,065 - -1.5 5,124,127 + Echvi_4274 0.27 +1.0 5,124,161 + Echvi_4274 0.38 +1.2 5,124,300 + Echvi_4274 0.81 -1.1 5,124,304 + Echvi_4274 0.82 +0.2 5,124,420 + +1.2 5,124,420 + -0.1 5,124,425 + +0.6 5,124,425 + +0.1 5,124,425 + -2.3 5,124,425 + +0.2 5,124,426 - +2.5 5,124,426 - +0.2 5,124,449 + -1.1 5,124,556 + Echvi_4275 0.19 -1.4
Or see this region's nucleotide sequence