Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4272

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4269 and Echvi_4270 are separated by 17 nucleotidesEchvi_4270 and Echvi_4271 are separated by 9 nucleotidesEchvi_4271 and Echvi_4272 overlap by 4 nucleotidesEchvi_4272 and Echvi_4273 are separated by 6 nucleotidesEchvi_4273 and Echvi_4274 are separated by 9 nucleotidesEchvi_4274 and Echvi_4275 are separated by 112 nucleotides Echvi_4269: Echvi_4269 - Uncharacterized protein conserved in bacteria, at 5,121,864 to 5,122,442 _4269 Echvi_4270: Echvi_4270 - hypothetical protein, at 5,122,460 to 5,122,813 _4270 Echvi_4271: Echvi_4271 - Uncharacterized conserved protein, at 5,122,823 to 5,123,179 _4271 Echvi_4272: Echvi_4272 - hypothetical protein, at 5,123,176 to 5,123,559 _4272 Echvi_4273: Echvi_4273 - Uncharacterized conserved protein, at 5,123,566 to 5,124,030 _4273 Echvi_4274: Echvi_4274 - Predicted transcriptional regulators, at 5,124,040 to 5,124,360 _4274 Echvi_4275: Echvi_4275 - hypothetical protein, at 5,124,473 to 5,124,901 _4275 Position (kb) 5123 5124Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5122.291 kb on - strand, within Echvi_4269at 5122.419 kb on + strandat 5122.485 kb on - strandat 5122.519 kb on + strand, within Echvi_4270at 5122.527 kb on + strand, within Echvi_4270at 5122.532 kb on - strand, within Echvi_4270at 5122.560 kb on - strand, within Echvi_4270at 5122.579 kb on + strand, within Echvi_4270at 5122.583 kb on + strand, within Echvi_4270at 5122.583 kb on + strand, within Echvi_4270at 5122.628 kb on + strand, within Echvi_4270at 5122.701 kb on + strand, within Echvi_4270at 5122.704 kb on + strand, within Echvi_4270at 5122.704 kb on + strand, within Echvi_4270at 5122.719 kb on - strand, within Echvi_4270at 5122.719 kb on - strand, within Echvi_4270at 5122.719 kb on - strand, within Echvi_4270at 5122.725 kb on - strand, within Echvi_4270at 5122.725 kb on - strand, within Echvi_4270at 5122.783 kb on + strandat 5122.790 kb on - strandat 5122.790 kb on - strandat 5122.802 kb on + strandat 5122.802 kb on + strandat 5122.803 kb on - strandat 5122.825 kb on - strandat 5122.825 kb on - strandat 5122.826 kb on + strandat 5122.826 kb on + strandat 5122.854 kb on - strandat 5122.897 kb on + strand, within Echvi_4271at 5122.926 kb on + strand, within Echvi_4271at 5123.026 kb on + strand, within Echvi_4271at 5123.026 kb on + strand, within Echvi_4271at 5123.027 kb on - strand, within Echvi_4271at 5123.027 kb on - strand, within Echvi_4271at 5123.028 kb on + strand, within Echvi_4271at 5123.028 kb on + strand, within Echvi_4271at 5123.028 kb on + strand, within Echvi_4271at 5123.028 kb on + strand, within Echvi_4271at 5123.029 kb on - strand, within Echvi_4271at 5123.029 kb on - strand, within Echvi_4271at 5123.029 kb on - strand, within Echvi_4271at 5123.034 kb on + strand, within Echvi_4271at 5123.035 kb on - strand, within Echvi_4271at 5123.038 kb on + strand, within Echvi_4271at 5123.080 kb on + strand, within Echvi_4271at 5123.105 kb on - strand, within Echvi_4271at 5123.112 kb on - strand, within Echvi_4271at 5123.138 kb on - strand, within Echvi_4271at 5123.154 kb on - strandat 5123.240 kb on - strand, within Echvi_4272at 5123.244 kb on + strand, within Echvi_4272at 5123.268 kb on + strand, within Echvi_4272at 5123.274 kb on + strand, within Echvi_4272at 5123.275 kb on - strand, within Echvi_4272at 5123.305 kb on - strand, within Echvi_4272at 5123.305 kb on - strand, within Echvi_4272at 5123.305 kb on - strand, within Echvi_4272at 5123.336 kb on + strand, within Echvi_4272at 5123.371 kb on - strand, within Echvi_4272at 5123.371 kb on - strand, within Echvi_4272at 5123.437 kb on + strand, within Echvi_4272at 5123.437 kb on + strand, within Echvi_4272at 5123.438 kb on - strand, within Echvi_4272at 5123.438 kb on - strand, within Echvi_4272at 5123.449 kb on - strand, within Echvi_4272at 5123.523 kb on + strandat 5123.523 kb on + strandat 5123.523 kb on + strandat 5123.524 kb on - strandat 5123.527 kb on + strandat 5123.528 kb on - strandat 5123.567 kb on + strandat 5123.686 kb on + strand, within Echvi_4273at 5123.737 kb on + strand, within Echvi_4273at 5123.737 kb on + strand, within Echvi_4273at 5123.799 kb on + strand, within Echvi_4273at 5123.799 kb on + strand, within Echvi_4273at 5123.821 kb on - strand, within Echvi_4273at 5123.827 kb on + strand, within Echvi_4273at 5123.858 kb on + strand, within Echvi_4273at 5123.859 kb on - strand, within Echvi_4273at 5123.859 kb on - strand, within Echvi_4273at 5123.898 kb on + strand, within Echvi_4273at 5123.934 kb on - strand, within Echvi_4273at 5123.934 kb on - strand, within Echvi_4273at 5123.943 kb on - strand, within Echvi_4273at 5123.944 kb on + strand, within Echvi_4273at 5123.974 kb on + strand, within Echvi_4273at 5123.975 kb on - strand, within Echvi_4273at 5123.976 kb on + strand, within Echvi_4273at 5123.976 kb on + strand, within Echvi_4273at 5123.976 kb on + strand, within Echvi_4273at 5123.977 kb on - strand, within Echvi_4273at 5124.030 kb on + strandat 5124.030 kb on + strandat 5124.030 kb on + strandat 5124.031 kb on - strandat 5124.041 kb on + strandat 5124.065 kb on - strandat 5124.127 kb on + strand, within Echvi_4274at 5124.161 kb on + strand, within Echvi_4274at 5124.300 kb on + strand, within Echvi_4274at 5124.304 kb on + strand, within Echvi_4274at 5124.420 kb on + strandat 5124.420 kb on + strandat 5124.425 kb on + strandat 5124.425 kb on + strandat 5124.425 kb on + strandat 5124.425 kb on + strandat 5124.426 kb on - strandat 5124.426 kb on - strandat 5124.449 kb on + strandat 5124.556 kb on + strand, within Echvi_4275

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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5,122,291 - Echvi_4269 0.74 +1.7
5,122,419 + -1.0
5,122,485 - +3.5
5,122,519 + Echvi_4270 0.17 +1.8
5,122,527 + Echvi_4270 0.19 +1.0
5,122,532 - Echvi_4270 0.20 -1.3
5,122,560 - Echvi_4270 0.28 +1.2
5,122,579 + Echvi_4270 0.34 +1.0
5,122,583 + Echvi_4270 0.35 -0.8
5,122,583 + Echvi_4270 0.35 +0.8
5,122,628 + Echvi_4270 0.47 +0.1
5,122,701 + Echvi_4270 0.68 -0.5
5,122,704 + Echvi_4270 0.69 -0.0
5,122,704 + Echvi_4270 0.69 +0.1
5,122,719 - Echvi_4270 0.73 +0.5
5,122,719 - Echvi_4270 0.73 -0.9
5,122,719 - Echvi_4270 0.73 -0.5
5,122,725 - Echvi_4270 0.75 -0.8
5,122,725 - Echvi_4270 0.75 +0.3
5,122,783 + -0.3
5,122,790 - -2.1
5,122,790 - -0.3
5,122,802 + +2.1
5,122,802 + +1.2
5,122,803 - -0.8
5,122,825 - -0.6
5,122,825 - +1.0
5,122,826 + -0.5
5,122,826 + +0.8
5,122,854 - -2.0
5,122,897 + Echvi_4271 0.21 -2.3
5,122,926 + Echvi_4271 0.29 +0.7
5,123,026 + Echvi_4271 0.57 -1.0
5,123,026 + Echvi_4271 0.57 +0.3
5,123,027 - Echvi_4271 0.57 -1.4
5,123,027 - Echvi_4271 0.57 +0.3
5,123,028 + Echvi_4271 0.57 +0.7
5,123,028 + Echvi_4271 0.57 +0.4
5,123,028 + Echvi_4271 0.57 -2.5
5,123,028 + Echvi_4271 0.57 -1.6
5,123,029 - Echvi_4271 0.58 -1.5
5,123,029 - Echvi_4271 0.58 -0.1
5,123,029 - Echvi_4271 0.58 +1.7
5,123,034 + Echvi_4271 0.59 +0.1
5,123,035 - Echvi_4271 0.59 -0.7
5,123,038 + Echvi_4271 0.60 +0.9
5,123,080 + Echvi_4271 0.72 +0.1
5,123,105 - Echvi_4271 0.79 +0.9
5,123,112 - Echvi_4271 0.81 +0.5
5,123,138 - Echvi_4271 0.88 -1.9
5,123,154 - -0.4
5,123,240 - Echvi_4272 0.17 -0.5
5,123,244 + Echvi_4272 0.18 -0.6
5,123,268 + Echvi_4272 0.24 -2.3
5,123,274 + Echvi_4272 0.26 -0.5
5,123,275 - Echvi_4272 0.26 -2.1
5,123,305 - Echvi_4272 0.34 +0.3
5,123,305 - Echvi_4272 0.34 -0.1
5,123,305 - Echvi_4272 0.34 -0.8
5,123,336 + Echvi_4272 0.42 -2.3
5,123,371 - Echvi_4272 0.51 +0.5
5,123,371 - Echvi_4272 0.51 -1.6
5,123,437 + Echvi_4272 0.68 -1.1
5,123,437 + Echvi_4272 0.68 -0.3
5,123,438 - Echvi_4272 0.68 -0.6
5,123,438 - Echvi_4272 0.68 +3.1
5,123,449 - Echvi_4272 0.71 -0.8
5,123,523 + +1.1
5,123,523 + -0.8
5,123,523 + +0.5
5,123,524 - +1.0
5,123,527 + +2.1
5,123,528 - -0.8
5,123,567 + -0.4
5,123,686 + Echvi_4273 0.26 +0.7
5,123,737 + Echvi_4273 0.37 -2.9
5,123,737 + Echvi_4273 0.37 -0.5
5,123,799 + Echvi_4273 0.50 -2.1
5,123,799 + Echvi_4273 0.50 +2.1
5,123,821 - Echvi_4273 0.55 -0.9
5,123,827 + Echvi_4273 0.56 +0.1
5,123,858 + Echvi_4273 0.63 +0.7
5,123,859 - Echvi_4273 0.63 -0.9
5,123,859 - Echvi_4273 0.63 +0.6
5,123,898 + Echvi_4273 0.71 +0.2
5,123,934 - Echvi_4273 0.79 -3.1
5,123,934 - Echvi_4273 0.79 +1.7
5,123,943 - Echvi_4273 0.81 +1.7
5,123,944 + Echvi_4273 0.81 +0.2
5,123,974 + Echvi_4273 0.88 +0.4
5,123,975 - Echvi_4273 0.88 +0.2
5,123,976 + Echvi_4273 0.88 +2.7
5,123,976 + Echvi_4273 0.88 +1.0
5,123,976 + Echvi_4273 0.88 +1.2
5,123,977 - Echvi_4273 0.88 -0.0
5,124,030 + +0.5
5,124,030 + +1.6
5,124,030 + +0.3
5,124,031 - -0.4
5,124,041 + -3.0
5,124,065 - -1.5
5,124,127 + Echvi_4274 0.27 +1.0
5,124,161 + Echvi_4274 0.38 +1.2
5,124,300 + Echvi_4274 0.81 -1.1
5,124,304 + Echvi_4274 0.82 +0.2
5,124,420 + +1.2
5,124,420 + -0.1
5,124,425 + +0.6
5,124,425 + +0.1
5,124,425 + -2.3
5,124,425 + +0.2
5,124,426 - +2.5
5,124,426 - +0.2
5,124,449 + -1.1
5,124,556 + Echvi_4275 0.19 -1.4

Or see this region's nucleotide sequence