Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4066

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4064 and Echvi_4065 are separated by 78 nucleotidesEchvi_4065 and Echvi_4066 are separated by 57 nucleotidesEchvi_4066 and Echvi_4067 are separated by 189 nucleotidesEchvi_4067 and Echvi_4068 are separated by 112 nucleotides Echvi_4064: Echvi_4064 - hypothetical protein, at 4,873,478 to 4,873,921 _4064 Echvi_4065: Echvi_4065 - hypothetical protein, at 4,874,000 to 4,874,452 _4065 Echvi_4066: Echvi_4066 - hypothetical protein, at 4,874,510 to 4,874,980 _4066 Echvi_4067: Echvi_4067 - hypothetical protein, at 4,875,170 to 4,875,607 _4067 Echvi_4068: Echvi_4068 - isocitrate dehydrogenase, at 4,875,720 to 4,877,183 _4068 Position (kb) 4874 4875Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4873.514 kb on + strandat 4873.611 kb on + strand, within Echvi_4064at 4873.611 kb on + strand, within Echvi_4064at 4873.621 kb on + strand, within Echvi_4064at 4873.622 kb on - strand, within Echvi_4064at 4873.639 kb on + strand, within Echvi_4064at 4873.640 kb on - strand, within Echvi_4064at 4873.668 kb on + strand, within Echvi_4064at 4873.672 kb on + strand, within Echvi_4064at 4873.672 kb on + strand, within Echvi_4064at 4873.673 kb on - strand, within Echvi_4064at 4873.674 kb on + strand, within Echvi_4064at 4873.674 kb on + strand, within Echvi_4064at 4873.674 kb on + strand, within Echvi_4064at 4873.675 kb on - strand, within Echvi_4064at 4873.675 kb on - strand, within Echvi_4064at 4873.675 kb on - strand, within Echvi_4064at 4873.713 kb on + strand, within Echvi_4064at 4873.714 kb on - strand, within Echvi_4064at 4873.739 kb on - strand, within Echvi_4064at 4873.749 kb on + strand, within Echvi_4064at 4873.749 kb on + strand, within Echvi_4064at 4873.800 kb on + strand, within Echvi_4064at 4873.811 kb on + strand, within Echvi_4064at 4873.835 kb on - strand, within Echvi_4064at 4873.842 kb on - strand, within Echvi_4064at 4873.922 kb on - strandat 4873.922 kb on - strandat 4873.922 kb on - strandat 4873.996 kb on + strandat 4873.996 kb on + strandat 4873.996 kb on + strandat 4873.996 kb on + strandat 4873.996 kb on + strandat 4873.996 kb on + strandat 4873.996 kb on + strandat 4873.997 kb on - strandat 4874.001 kb on + strandat 4874.001 kb on + strandat 4874.001 kb on + strandat 4874.001 kb on + strandat 4874.002 kb on - strandat 4874.002 kb on - strandat 4874.002 kb on - strandat 4874.051 kb on - strand, within Echvi_4065at 4874.110 kb on + strand, within Echvi_4065at 4874.116 kb on + strand, within Echvi_4065at 4874.145 kb on + strand, within Echvi_4065at 4874.145 kb on + strand, within Echvi_4065at 4874.146 kb on - strand, within Echvi_4065at 4874.146 kb on - strand, within Echvi_4065at 4874.146 kb on - strand, within Echvi_4065at 4874.275 kb on - strand, within Echvi_4065at 4874.288 kb on + strand, within Echvi_4065at 4874.291 kb on + strand, within Echvi_4065at 4874.292 kb on - strand, within Echvi_4065at 4874.292 kb on - strand, within Echvi_4065at 4874.359 kb on - strand, within Echvi_4065at 4874.364 kb on + strand, within Echvi_4065at 4874.364 kb on + strand, within Echvi_4065at 4874.365 kb on - strand, within Echvi_4065at 4874.365 kb on - strand, within Echvi_4065at 4874.426 kb on + strandat 4874.427 kb on - strandat 4874.427 kb on - strandat 4874.474 kb on - strandat 4874.511 kb on + strandat 4874.511 kb on + strandat 4874.511 kb on + strandat 4874.512 kb on - strandat 4874.512 kb on - strandat 4874.512 kb on - strandat 4874.512 kb on - strandat 4874.512 kb on - strandat 4874.516 kb on - strandat 4874.524 kb on - strandat 4874.555 kb on + strandat 4874.556 kb on - strandat 4874.556 kb on - strandat 4874.558 kb on - strand, within Echvi_4066at 4874.623 kb on + strand, within Echvi_4066at 4874.623 kb on + strand, within Echvi_4066at 4874.624 kb on - strand, within Echvi_4066at 4874.624 kb on - strand, within Echvi_4066at 4874.624 kb on - strand, within Echvi_4066at 4874.625 kb on + strand, within Echvi_4066at 4874.626 kb on - strand, within Echvi_4066at 4874.663 kb on + strand, within Echvi_4066at 4874.671 kb on + strand, within Echvi_4066at 4874.671 kb on + strand, within Echvi_4066at 4874.672 kb on - strand, within Echvi_4066at 4874.672 kb on - strand, within Echvi_4066at 4874.674 kb on - strand, within Echvi_4066at 4874.736 kb on + strand, within Echvi_4066at 4874.737 kb on - strand, within Echvi_4066at 4874.767 kb on + strand, within Echvi_4066at 4874.767 kb on + strand, within Echvi_4066at 4874.768 kb on - strand, within Echvi_4066at 4874.889 kb on + strand, within Echvi_4066at 4874.987 kb on + strandat 4875.092 kb on + strandat 4875.115 kb on + strandat 4875.134 kb on - strandat 4875.172 kb on - strandat 4875.190 kb on - strandat 4875.227 kb on - strand, within Echvi_4067at 4875.227 kb on - strand, within Echvi_4067at 4875.238 kb on + strand, within Echvi_4067at 4875.238 kb on + strand, within Echvi_4067at 4875.276 kb on - strand, within Echvi_4067at 4875.318 kb on + strand, within Echvi_4067at 4875.318 kb on + strand, within Echvi_4067at 4875.318 kb on + strand, within Echvi_4067at 4875.319 kb on - strand, within Echvi_4067at 4875.319 kb on - strand, within Echvi_4067at 4875.323 kb on + strand, within Echvi_4067at 4875.330 kb on - strand, within Echvi_4067at 4875.352 kb on + strand, within Echvi_4067at 4875.353 kb on - strand, within Echvi_4067at 4875.447 kb on + strand, within Echvi_4067at 4875.447 kb on + strand, within Echvi_4067at 4875.448 kb on - strand, within Echvi_4067at 4875.448 kb on - strand, within Echvi_4067at 4875.480 kb on + strand, within Echvi_4067at 4875.480 kb on + strand, within Echvi_4067at 4875.481 kb on - strand, within Echvi_4067at 4875.517 kb on + strand, within Echvi_4067at 4875.517 kb on + strand, within Echvi_4067at 4875.518 kb on - strand, within Echvi_4067at 4875.519 kb on + strand, within Echvi_4067at 4875.519 kb on + strand, within Echvi_4067at 4875.520 kb on - strand, within Echvi_4067at 4875.574 kb on + strandat 4875.574 kb on + strandat 4875.575 kb on - strandat 4875.575 kb on - strandat 4875.575 kb on - strandat 4875.593 kb on - strandat 4875.610 kb on + strandat 4875.646 kb on + strandat 4875.647 kb on - strandat 4875.649 kb on - strandat 4875.705 kb on + strandat 4875.705 kb on + strandat 4875.707 kb on + strandat 4875.707 kb on + strandat 4875.707 kb on + strandat 4875.722 kb on - strandat 4875.828 kb on + strandat 4875.873 kb on + strand, within Echvi_4068at 4875.922 kb on - strand, within Echvi_4068at 4875.922 kb on - strand, within Echvi_4068

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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4,873,514 + +1.4
4,873,611 + Echvi_4064 0.30 -3.5
4,873,611 + Echvi_4064 0.30 -0.6
4,873,621 + Echvi_4064 0.32 -0.6
4,873,622 - Echvi_4064 0.32 -1.6
4,873,639 + Echvi_4064 0.36 -0.6
4,873,640 - Echvi_4064 0.36 +0.8
4,873,668 + Echvi_4064 0.43 +0.4
4,873,672 + Echvi_4064 0.44 -2.7
4,873,672 + Echvi_4064 0.44 -0.6
4,873,673 - Echvi_4064 0.44 -0.7
4,873,674 + Echvi_4064 0.44 -0.2
4,873,674 + Echvi_4064 0.44 -0.8
4,873,674 + Echvi_4064 0.44 -0.8
4,873,675 - Echvi_4064 0.44 -0.6
4,873,675 - Echvi_4064 0.44 -2.4
4,873,675 - Echvi_4064 0.44 +0.4
4,873,713 + Echvi_4064 0.53 +1.0
4,873,714 - Echvi_4064 0.53 +0.0
4,873,739 - Echvi_4064 0.59 -0.3
4,873,749 + Echvi_4064 0.61 +0.4
4,873,749 + Echvi_4064 0.61 +2.7
4,873,800 + Echvi_4064 0.73 -0.6
4,873,811 + Echvi_4064 0.75 -0.6
4,873,835 - Echvi_4064 0.80 +0.3
4,873,842 - Echvi_4064 0.82 +1.0
4,873,922 - +0.5
4,873,922 - +1.4
4,873,922 - -0.6
4,873,996 + -0.3
4,873,996 + +0.3
4,873,996 + -1.6
4,873,996 + +1.7
4,873,996 + -1.1
4,873,996 + +0.3
4,873,996 + -0.4
4,873,997 - +3.0
4,874,001 + +0.1
4,874,001 + +1.3
4,874,001 + +1.2
4,874,001 + +0.6
4,874,002 - +0.5
4,874,002 - -0.6
4,874,002 - -0.6
4,874,051 - Echvi_4065 0.11 +0.4
4,874,110 + Echvi_4065 0.24 +0.1
4,874,116 + Echvi_4065 0.26 +2.1
4,874,145 + Echvi_4065 0.32 +0.7
4,874,145 + Echvi_4065 0.32 +0.6
4,874,146 - Echvi_4065 0.32 -1.1
4,874,146 - Echvi_4065 0.32 +0.4
4,874,146 - Echvi_4065 0.32 +0.0
4,874,275 - Echvi_4065 0.61 -1.8
4,874,288 + Echvi_4065 0.64 -2.3
4,874,291 + Echvi_4065 0.64 +0.4
4,874,292 - Echvi_4065 0.64 +1.0
4,874,292 - Echvi_4065 0.64 +0.1
4,874,359 - Echvi_4065 0.79 -0.1
4,874,364 + Echvi_4065 0.80 -0.3
4,874,364 + Echvi_4065 0.80 +0.9
4,874,365 - Echvi_4065 0.81 -2.4
4,874,365 - Echvi_4065 0.81 -2.3
4,874,426 + -1.3
4,874,427 - +1.4
4,874,427 - +0.7
4,874,474 - -1.4
4,874,511 + +0.0
4,874,511 + -0.8
4,874,511 + +1.2
4,874,512 - -0.8
4,874,512 - +1.1
4,874,512 - -1.3
4,874,512 - +0.3
4,874,512 - -1.7
4,874,516 - -0.8
4,874,524 - -0.7
4,874,555 + +1.2
4,874,556 - -0.3
4,874,556 - -0.3
4,874,558 - Echvi_4066 0.10 -1.6
4,874,623 + Echvi_4066 0.24 +0.0
4,874,623 + Echvi_4066 0.24 +0.7
4,874,624 - Echvi_4066 0.24 -0.0
4,874,624 - Echvi_4066 0.24 +0.4
4,874,624 - Echvi_4066 0.24 +0.0
4,874,625 + Echvi_4066 0.24 +1.9
4,874,626 - Echvi_4066 0.25 -0.5
4,874,663 + Echvi_4066 0.32 +1.4
4,874,671 + Echvi_4066 0.34 +0.4
4,874,671 + Echvi_4066 0.34 +1.3
4,874,672 - Echvi_4066 0.34 +0.0
4,874,672 - Echvi_4066 0.34 +1.3
4,874,674 - Echvi_4066 0.35 -0.6
4,874,736 + Echvi_4066 0.48 +0.2
4,874,737 - Echvi_4066 0.48 +1.2
4,874,767 + Echvi_4066 0.55 -0.6
4,874,767 + Echvi_4066 0.55 -0.6
4,874,768 - Echvi_4066 0.55 -0.2
4,874,889 + Echvi_4066 0.80 +0.6
4,874,987 + +0.5
4,875,092 + -1.0
4,875,115 + -2.6
4,875,134 - +0.2
4,875,172 - -0.7
4,875,190 - -0.9
4,875,227 - Echvi_4067 0.13 -0.1
4,875,227 - Echvi_4067 0.13 -0.3
4,875,238 + Echvi_4067 0.16 -1.9
4,875,238 + Echvi_4067 0.16 -0.4
4,875,276 - Echvi_4067 0.24 +0.0
4,875,318 + Echvi_4067 0.34 -0.4
4,875,318 + Echvi_4067 0.34 +0.2
4,875,318 + Echvi_4067 0.34 -0.9
4,875,319 - Echvi_4067 0.34 -1.2
4,875,319 - Echvi_4067 0.34 +0.0
4,875,323 + Echvi_4067 0.35 -1.0
4,875,330 - Echvi_4067 0.37 +1.1
4,875,352 + Echvi_4067 0.42 -0.4
4,875,353 - Echvi_4067 0.42 -0.2
4,875,447 + Echvi_4067 0.63 -0.3
4,875,447 + Echvi_4067 0.63 +0.3
4,875,448 - Echvi_4067 0.63 -2.2
4,875,448 - Echvi_4067 0.63 +0.0
4,875,480 + Echvi_4067 0.71 -0.8
4,875,480 + Echvi_4067 0.71 +0.9
4,875,481 - Echvi_4067 0.71 +1.0
4,875,517 + Echvi_4067 0.79 +0.3
4,875,517 + Echvi_4067 0.79 -0.1
4,875,518 - Echvi_4067 0.79 -1.2
4,875,519 + Echvi_4067 0.80 -2.6
4,875,519 + Echvi_4067 0.80 -0.5
4,875,520 - Echvi_4067 0.80 -0.1
4,875,574 + +0.3
4,875,574 + -1.3
4,875,575 - -1.1
4,875,575 - +2.3
4,875,575 - +0.6
4,875,593 - +0.4
4,875,610 + -0.2
4,875,646 + -0.6
4,875,647 - -1.6
4,875,649 - -0.6
4,875,705 + +0.9
4,875,705 + -0.1
4,875,707 + +0.4
4,875,707 + -1.8
4,875,707 + +0.3
4,875,722 - -0.0
4,875,828 + -2.1
4,875,873 + Echvi_4068 0.10 -0.8
4,875,922 - Echvi_4068 0.14 -0.8
4,875,922 - Echvi_4068 0.14 -0.3

Or see this region's nucleotide sequence