Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3633 and Echvi_3634 are separated by 126 nucleotides Echvi_3634 and Echvi_3635 are separated by 596 nucleotides
Echvi_3633: Echvi_3633 - Domain of Unknown Function (DUF1080)., at 4,314,134 to 4,315,519
_3633
Echvi_3634: Echvi_3634 - Predicted dehydrogenases and related proteins, at 4,315,646 to 4,316,995
_3634
Echvi_3635: Echvi_3635 - Predicted dehydrogenases and related proteins, at 4,317,592 to 4,318,911
_3635
Position (kb)
4315
4316
4317 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4314.672 kb on + strand, within Echvi_3633 at 4314.678 kb on - strand, within Echvi_3633 at 4314.678 kb on - strand, within Echvi_3633 at 4314.710 kb on - strand, within Echvi_3633 at 4314.728 kb on - strand, within Echvi_3633 at 4314.767 kb on + strand, within Echvi_3633 at 4314.781 kb on + strand, within Echvi_3633 at 4314.830 kb on + strand, within Echvi_3633 at 4314.830 kb on + strand, within Echvi_3633 at 4314.830 kb on + strand, within Echvi_3633 at 4314.830 kb on + strand, within Echvi_3633 at 4314.830 kb on + strand, within Echvi_3633 at 4314.830 kb on + strand, within Echvi_3633 at 4314.830 kb on + strand, within Echvi_3633 at 4314.831 kb on - strand, within Echvi_3633 at 4314.831 kb on - strand, within Echvi_3633 at 4314.831 kb on - strand, within Echvi_3633 at 4314.841 kb on + strand, within Echvi_3633 at 4314.841 kb on + strand, within Echvi_3633 at 4314.842 kb on - strand, within Echvi_3633 at 4314.866 kb on + strand, within Echvi_3633 at 4314.867 kb on - strand, within Echvi_3633 at 4314.895 kb on - strand, within Echvi_3633 at 4314.895 kb on - strand, within Echvi_3633 at 4314.907 kb on + strand, within Echvi_3633 at 4314.908 kb on - strand, within Echvi_3633 at 4314.908 kb on - strand, within Echvi_3633 at 4314.968 kb on - strand, within Echvi_3633 at 4315.046 kb on + strand, within Echvi_3633 at 4315.046 kb on + strand, within Echvi_3633 at 4315.046 kb on + strand, within Echvi_3633 at 4315.046 kb on + strand, within Echvi_3633 at 4315.246 kb on + strand, within Echvi_3633 at 4315.247 kb on - strand, within Echvi_3633 at 4315.272 kb on + strand, within Echvi_3633 at 4315.329 kb on + strand, within Echvi_3633 at 4315.329 kb on + strand, within Echvi_3633 at 4315.330 kb on - strand, within Echvi_3633 at 4315.341 kb on + strand, within Echvi_3633 at 4315.342 kb on - strand, within Echvi_3633 at 4315.351 kb on - strand, within Echvi_3633 at 4315.365 kb on - strand, within Echvi_3633 at 4315.512 kb on + strand at 4315.512 kb on + strand at 4315.512 kb on + strand at 4315.513 kb on - strand at 4315.513 kb on - strand at 4315.518 kb on - strand at 4315.660 kb on + strand at 4315.660 kb on + strand at 4315.663 kb on + strand at 4315.663 kb on + strand at 4315.663 kb on + strand at 4315.663 kb on + strand at 4315.759 kb on - strand at 4315.780 kb on + strand at 4315.781 kb on - strand, within Echvi_3634 at 4315.783 kb on - strand, within Echvi_3634 at 4315.817 kb on + strand, within Echvi_3634 at 4315.818 kb on - strand, within Echvi_3634 at 4315.820 kb on + strand, within Echvi_3634 at 4315.820 kb on + strand, within Echvi_3634 at 4315.820 kb on + strand, within Echvi_3634 at 4315.820 kb on + strand, within Echvi_3634 at 4315.820 kb on + strand, within Echvi_3634 at 4315.821 kb on - strand, within Echvi_3634 at 4315.821 kb on - strand, within Echvi_3634 at 4315.821 kb on - strand, within Echvi_3634 at 4315.852 kb on - strand, within Echvi_3634 at 4315.852 kb on - strand, within Echvi_3634 at 4315.863 kb on - strand, within Echvi_3634 at 4315.957 kb on + strand, within Echvi_3634 at 4315.981 kb on - strand, within Echvi_3634 at 4316.058 kb on + strand, within Echvi_3634 at 4316.058 kb on + strand, within Echvi_3634 at 4316.058 kb on + strand, within Echvi_3634 at 4316.058 kb on + strand, within Echvi_3634 at 4316.058 kb on + strand, within Echvi_3634 at 4316.058 kb on + strand, within Echvi_3634 at 4316.058 kb on + strand, within Echvi_3634 at 4316.059 kb on - strand, within Echvi_3634 at 4316.059 kb on - strand, within Echvi_3634 at 4316.059 kb on - strand, within Echvi_3634 at 4316.059 kb on - strand, within Echvi_3634 at 4316.059 kb on - strand, within Echvi_3634 at 4316.059 kb on - strand, within Echvi_3634 at 4316.059 kb on - strand, within Echvi_3634 at 4316.060 kb on + strand, within Echvi_3634 at 4316.060 kb on + strand, within Echvi_3634 at 4316.060 kb on + strand, within Echvi_3634 at 4316.060 kb on + strand, within Echvi_3634 at 4316.060 kb on + strand, within Echvi_3634 at 4316.060 kb on + strand, within Echvi_3634 at 4316.060 kb on + strand, within Echvi_3634 at 4316.060 kb on + strand, within Echvi_3634 at 4316.060 kb on + strand, within Echvi_3634 at 4316.061 kb on - strand, within Echvi_3634 at 4316.061 kb on - strand, within Echvi_3634 at 4316.061 kb on - strand, within Echvi_3634 at 4316.061 kb on - strand, within Echvi_3634 at 4316.064 kb on + strand, within Echvi_3634 at 4316.265 kb on + strand, within Echvi_3634 at 4316.265 kb on + strand, within Echvi_3634 at 4316.340 kb on - strand, within Echvi_3634 at 4316.360 kb on + strand, within Echvi_3634 at 4316.362 kb on + strand, within Echvi_3634 at 4316.362 kb on + strand, within Echvi_3634 at 4316.407 kb on + strand, within Echvi_3634 at 4316.407 kb on + strand, within Echvi_3634 at 4316.408 kb on - strand, within Echvi_3634 at 4316.408 kb on - strand, within Echvi_3634 at 4316.478 kb on + strand, within Echvi_3634 at 4316.479 kb on - strand, within Echvi_3634 at 4316.493 kb on - strand, within Echvi_3634 at 4316.493 kb on - strand, within Echvi_3634 at 4316.522 kb on + strand, within Echvi_3634 at 4316.522 kb on + strand, within Echvi_3634 at 4316.522 kb on + strand, within Echvi_3634 at 4316.522 kb on + strand, within Echvi_3634 at 4316.523 kb on - strand, within Echvi_3634 at 4316.523 kb on - strand, within Echvi_3634 at 4316.523 kb on - strand, within Echvi_3634 at 4316.541 kb on + strand, within Echvi_3634 at 4316.546 kb on - strand, within Echvi_3634 at 4316.557 kb on + strand, within Echvi_3634 at 4316.558 kb on - strand, within Echvi_3634 at 4316.675 kb on - strand, within Echvi_3634 at 4316.696 kb on - strand, within Echvi_3634 at 4316.696 kb on - strand, within Echvi_3634 at 4316.701 kb on - strand, within Echvi_3634 at 4316.781 kb on - strand, within Echvi_3634 at 4316.873 kb on - strand at 4316.895 kb on + strand at 4316.895 kb on + strand at 4316.895 kb on + strand at 4316.895 kb on + strand at 4316.895 kb on + strand at 4316.895 kb on + strand at 4316.896 kb on - strand at 4316.896 kb on - strand at 4316.924 kb on - strand at 4316.990 kb on - strand at 4316.993 kb on + strand at 4316.993 kb on + strand at 4316.993 kb on + strand at 4316.994 kb on - strand at 4316.994 kb on - strand at 4316.994 kb on - strand at 4316.994 kb on - strand at 4316.994 kb on - strand at 4317.000 kb on - strand at 4317.001 kb on + strand at 4317.001 kb on + strand at 4317.002 kb on - strand at 4317.014 kb on + strand at 4317.059 kb on - strand at 4317.125 kb on + strand at 4317.126 kb on - strand at 4317.371 kb on + strand at 4317.394 kb on + strand at 4317.394 kb on + strand at 4317.394 kb on + strand at 4317.395 kb on - strand at 4317.401 kb on - strand at 4317.401 kb on - strand at 4317.413 kb on - strand at 4317.418 kb on - strand at 4317.495 kb on + strand at 4317.495 kb on + strand at 4317.496 kb on - strand at 4317.496 kb on - strand at 4317.510 kb on + strand at 4317.574 kb on + strand at 4317.575 kb on - strand at 4317.649 kb on + strand at 4317.649 kb on + strand at 4317.649 kb on + strand at 4317.650 kb on - strand at 4317.698 kb on - strand at 4317.698 kb on - strand at 4317.699 kb on + strand at 4317.708 kb on + strand at 4317.760 kb on + strand, within Echvi_3635 at 4317.766 kb on - strand, within Echvi_3635 at 4317.778 kb on - strand, within Echvi_3635 at 4317.806 kb on + strand, within Echvi_3635 at 4317.806 kb on + strand, within Echvi_3635 at 4317.807 kb on - strand, within Echvi_3635 at 4317.807 kb on - strand, within Echvi_3635 at 4317.807 kb on - strand, within Echvi_3635 at 4317.810 kb on + strand, within Echvi_3635 at 4317.810 kb on + strand, within Echvi_3635 at 4317.811 kb on - strand, within Echvi_3635 at 4317.811 kb on - strand, within Echvi_3635 at 4317.811 kb on - strand, within Echvi_3635 at 4317.811 kb on - strand, within Echvi_3635 at 4317.811 kb on - strand, within Echvi_3635 at 4317.811 kb on - strand, within Echvi_3635 at 4317.812 kb on + strand, within Echvi_3635 at 4317.812 kb on + strand, within Echvi_3635 at 4317.812 kb on + strand, within Echvi_3635 at 4317.812 kb on + strand, within Echvi_3635 at 4317.812 kb on + strand, within Echvi_3635 at 4317.813 kb on - strand, within Echvi_3635 at 4317.813 kb on - strand, within Echvi_3635 at 4317.839 kb on - strand, within Echvi_3635 at 4317.870 kb on + strand, within Echvi_3635 at 4317.871 kb on - strand, within Echvi_3635 at 4317.893 kb on + strand, within Echvi_3635 at 4317.894 kb on - strand, within Echvi_3635 at 4317.896 kb on - strand, within Echvi_3635 at 4317.910 kb on + strand, within Echvi_3635 at 4317.947 kb on + strand, within Echvi_3635 at 4317.947 kb on + strand, within Echvi_3635 at 4317.947 kb on + strand, within Echvi_3635 at 4317.948 kb on - strand, within Echvi_3635 at 4317.948 kb on - strand, within Echvi_3635 at 4317.948 kb on - strand, within Echvi_3635 at 4317.948 kb on - strand, within Echvi_3635
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 4,314,672 + Echvi_3633 0.39 -0.0 4,314,678 - Echvi_3633 0.39 +0.7 4,314,678 - Echvi_3633 0.39 +0.1 4,314,710 - Echvi_3633 0.42 +1.3 4,314,728 - Echvi_3633 0.43 +1.3 4,314,767 + Echvi_3633 0.46 +1.1 4,314,781 + Echvi_3633 0.47 +0.3 4,314,830 + Echvi_3633 0.50 +0.5 4,314,830 + Echvi_3633 0.50 +2.0 4,314,830 + Echvi_3633 0.50 +0.4 4,314,830 + Echvi_3633 0.50 -0.4 4,314,830 + Echvi_3633 0.50 -0.4 4,314,830 + Echvi_3633 0.50 +2.1 4,314,830 + Echvi_3633 0.50 -1.2 4,314,831 - Echvi_3633 0.50 +1.0 4,314,831 - Echvi_3633 0.50 +0.4 4,314,831 - Echvi_3633 0.50 +0.1 4,314,841 + Echvi_3633 0.51 +0.2 4,314,841 + Echvi_3633 0.51 -1.4 4,314,842 - Echvi_3633 0.51 +0.0 4,314,866 + Echvi_3633 0.53 -1.4 4,314,867 - Echvi_3633 0.53 -1.4 4,314,895 - Echvi_3633 0.55 +0.6 4,314,895 - Echvi_3633 0.55 +1.0 4,314,907 + Echvi_3633 0.56 -1.1 4,314,908 - Echvi_3633 0.56 +0.4 4,314,908 - Echvi_3633 0.56 -0.2 4,314,968 - Echvi_3633 0.60 -0.1 4,315,046 + Echvi_3633 0.66 -0.3 4,315,046 + Echvi_3633 0.66 -1.4 4,315,046 + Echvi_3633 0.66 -1.2 4,315,046 + Echvi_3633 0.66 +0.9 4,315,246 + Echvi_3633 0.80 -2.0 4,315,247 - Echvi_3633 0.80 +2.0 4,315,272 + Echvi_3633 0.82 -1.0 4,315,329 + Echvi_3633 0.86 -0.6 4,315,329 + Echvi_3633 0.86 -0.5 4,315,330 - Echvi_3633 0.86 +0.8 4,315,341 + Echvi_3633 0.87 -0.4 4,315,342 - Echvi_3633 0.87 +1.2 4,315,351 - Echvi_3633 0.88 +0.9 4,315,365 - Echvi_3633 0.89 +1.5 4,315,512 + -3.4 4,315,512 + +0.1 4,315,512 + -0.5 4,315,513 - -0.0 4,315,513 - -0.5 4,315,518 - +1.1 4,315,660 + +0.6 4,315,660 + -0.7 4,315,663 + -1.2 4,315,663 + +0.8 4,315,663 + -0.1 4,315,663 + -0.0 4,315,759 - +0.1 4,315,780 + +1.8 4,315,781 - Echvi_3634 0.10 +1.1 4,315,783 - Echvi_3634 0.10 -2.1 4,315,817 + Echvi_3634 0.13 +1.4 4,315,818 - Echvi_3634 0.13 -1.2 4,315,820 + Echvi_3634 0.13 -0.3 4,315,820 + Echvi_3634 0.13 +1.4 4,315,820 + Echvi_3634 0.13 -0.9 4,315,820 + Echvi_3634 0.13 -1.5 4,315,820 + Echvi_3634 0.13 +0.6 4,315,821 - Echvi_3634 0.13 -0.3 4,315,821 - Echvi_3634 0.13 +0.7 4,315,821 - Echvi_3634 0.13 -0.6 4,315,852 - Echvi_3634 0.15 +0.3 4,315,852 - Echvi_3634 0.15 -0.9 4,315,863 - Echvi_3634 0.16 +2.2 4,315,957 + Echvi_3634 0.23 -0.4 4,315,981 - Echvi_3634 0.25 +1.0 4,316,058 + Echvi_3634 0.31 +1.1 4,316,058 + Echvi_3634 0.31 -0.9 4,316,058 + Echvi_3634 0.31 +0.5 4,316,058 + Echvi_3634 0.31 -1.0 4,316,058 + Echvi_3634 0.31 +0.4 4,316,058 + Echvi_3634 0.31 +0.7 4,316,058 + Echvi_3634 0.31 -2.0 4,316,059 - Echvi_3634 0.31 +0.0 4,316,059 - Echvi_3634 0.31 +0.7 4,316,059 - Echvi_3634 0.31 +1.3 4,316,059 - Echvi_3634 0.31 +0.2 4,316,059 - Echvi_3634 0.31 -1.6 4,316,059 - Echvi_3634 0.31 -0.2 4,316,059 - Echvi_3634 0.31 +3.1 4,316,060 + Echvi_3634 0.31 +0.6 4,316,060 + Echvi_3634 0.31 -0.9 4,316,060 + Echvi_3634 0.31 +1.0 4,316,060 + Echvi_3634 0.31 -2.6 4,316,060 + Echvi_3634 0.31 -2.7 4,316,060 + Echvi_3634 0.31 +0.3 4,316,060 + Echvi_3634 0.31 +0.5 4,316,060 + Echvi_3634 0.31 +0.3 4,316,060 + Echvi_3634 0.31 -1.3 4,316,061 - Echvi_3634 0.31 -0.4 4,316,061 - Echvi_3634 0.31 +0.6 4,316,061 - Echvi_3634 0.31 +0.1 4,316,061 - Echvi_3634 0.31 -0.4 4,316,064 + Echvi_3634 0.31 -0.1 4,316,265 + Echvi_3634 0.46 -0.6 4,316,265 + Echvi_3634 0.46 +0.4 4,316,340 - Echvi_3634 0.51 +1.2 4,316,360 + Echvi_3634 0.53 -2.0 4,316,362 + Echvi_3634 0.53 -0.4 4,316,362 + Echvi_3634 0.53 -0.3 4,316,407 + Echvi_3634 0.56 +0.6 4,316,407 + Echvi_3634 0.56 +0.0 4,316,408 - Echvi_3634 0.56 -0.1 4,316,408 - Echvi_3634 0.56 +1.0 4,316,478 + Echvi_3634 0.62 -2.5 4,316,479 - Echvi_3634 0.62 -0.9 4,316,493 - Echvi_3634 0.63 -0.6 4,316,493 - Echvi_3634 0.63 -2.5 4,316,522 + Echvi_3634 0.65 -0.8 4,316,522 + Echvi_3634 0.65 +0.2 4,316,522 + Echvi_3634 0.65 -0.1 4,316,522 + Echvi_3634 0.65 -0.4 4,316,523 - Echvi_3634 0.65 -1.2 4,316,523 - Echvi_3634 0.65 -0.3 4,316,523 - Echvi_3634 0.65 -0.2 4,316,541 + Echvi_3634 0.66 -2.0 4,316,546 - Echvi_3634 0.67 +0.1 4,316,557 + Echvi_3634 0.67 -0.6 4,316,558 - Echvi_3634 0.68 +0.0 4,316,675 - Echvi_3634 0.76 +0.3 4,316,696 - Echvi_3634 0.78 -2.2 4,316,696 - Echvi_3634 0.78 -0.0 4,316,701 - Echvi_3634 0.78 +1.0 4,316,781 - Echvi_3634 0.84 +0.9 4,316,873 - -0.0 4,316,895 + +1.4 4,316,895 + +0.6 4,316,895 + -2.0 4,316,895 + -0.2 4,316,895 + -0.8 4,316,895 + -0.8 4,316,896 - +3.2 4,316,896 - -0.4 4,316,924 - +1.1 4,316,990 - +2.6 4,316,993 + -1.6 4,316,993 + +1.4 4,316,993 + -2.5 4,316,994 - -1.9 4,316,994 - -0.0 4,316,994 - -1.5 4,316,994 - -0.3 4,316,994 - -1.2 4,317,000 - +0.2 4,317,001 + +0.4 4,317,001 + +0.8 4,317,002 - +0.4 4,317,014 + +1.0 4,317,059 - -0.1 4,317,125 + -0.4 4,317,126 - +0.1 4,317,371 + -1.9 4,317,394 + -0.6 4,317,394 + -0.8 4,317,394 + -1.1 4,317,395 - -0.7 4,317,401 - -0.2 4,317,401 - +0.1 4,317,413 - -1.2 4,317,418 - +0.5 4,317,495 + +0.6 4,317,495 + +1.4 4,317,496 - +1.4 4,317,496 - -0.1 4,317,510 + +0.1 4,317,574 + -0.8 4,317,575 - -0.9 4,317,649 + +0.1 4,317,649 + -0.3 4,317,649 + +0.7 4,317,650 - -2.0 4,317,698 - +1.5 4,317,698 - -2.1 4,317,699 + -0.6 4,317,708 + +2.0 4,317,760 + Echvi_3635 0.13 -2.1 4,317,766 - Echvi_3635 0.13 -0.4 4,317,778 - Echvi_3635 0.14 -1.1 4,317,806 + Echvi_3635 0.16 +0.7 4,317,806 + Echvi_3635 0.16 +0.2 4,317,807 - Echvi_3635 0.16 +0.2 4,317,807 - Echvi_3635 0.16 +2.8 4,317,807 - Echvi_3635 0.16 +0.9 4,317,810 + Echvi_3635 0.17 -0.9 4,317,810 + Echvi_3635 0.17 -0.2 4,317,811 - Echvi_3635 0.17 +2.0 4,317,811 - Echvi_3635 0.17 -0.0 4,317,811 - Echvi_3635 0.17 -0.8 4,317,811 - Echvi_3635 0.17 +0.9 4,317,811 - Echvi_3635 0.17 -0.0 4,317,811 - Echvi_3635 0.17 -0.2 4,317,812 + Echvi_3635 0.17 +1.0 4,317,812 + Echvi_3635 0.17 -2.7 4,317,812 + Echvi_3635 0.17 -0.2 4,317,812 + Echvi_3635 0.17 -0.2 4,317,812 + Echvi_3635 0.17 +0.4 4,317,813 - Echvi_3635 0.17 +0.6 4,317,813 - Echvi_3635 0.17 -1.2 4,317,839 - Echvi_3635 0.19 +1.5 4,317,870 + Echvi_3635 0.21 -0.9 4,317,871 - Echvi_3635 0.21 +0.4 4,317,893 + Echvi_3635 0.23 +0.4 4,317,894 - Echvi_3635 0.23 +2.0 4,317,896 - Echvi_3635 0.23 -0.6 4,317,910 + Echvi_3635 0.24 -0.8 4,317,947 + Echvi_3635 0.27 -0.9 4,317,947 + Echvi_3635 0.27 -0.9 4,317,947 + Echvi_3635 0.27 +1.1 4,317,948 - Echvi_3635 0.27 -0.3 4,317,948 - Echvi_3635 0.27 -0.2 4,317,948 - Echvi_3635 0.27 -2.6 4,317,948 - Echvi_3635 0.27 +0.1
Or see this region's nucleotide sequence