Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2899 and Echvi_2900 overlap by 84 nucleotides Echvi_2900 and Echvi_2901 are separated by 124 nucleotides Echvi_2901 and Echvi_2902 are separated by 40 nucleotides
Echvi_2899: Echvi_2899 - Arylsulfatase A and related enzymes, at 3,473,651 to 3,475,210
_2899
Echvi_2900: Echvi_2900 - hypothetical protein, at 3,475,127 to 3,475,312
_2900
Echvi_2901: Echvi_2901 - hypothetical protein, at 3,475,437 to 3,476,525
_2901
Echvi_2902: Echvi_2902 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 3,476,566 to 3,477,966
_2902
Position (kb)
3475
3476
3477 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3474.437 kb on + strand, within Echvi_2899 at 3474.438 kb on - strand, within Echvi_2899 at 3474.438 kb on - strand, within Echvi_2899 at 3474.488 kb on + strand, within Echvi_2899 at 3474.515 kb on + strand, within Echvi_2899 at 3474.516 kb on - strand, within Echvi_2899 at 3474.563 kb on + strand, within Echvi_2899 at 3474.581 kb on + strand, within Echvi_2899 at 3474.601 kb on + strand, within Echvi_2899 at 3474.602 kb on - strand, within Echvi_2899 at 3474.710 kb on - strand, within Echvi_2899 at 3474.750 kb on - strand, within Echvi_2899 at 3474.836 kb on + strand, within Echvi_2899 at 3474.837 kb on - strand, within Echvi_2899 at 3474.879 kb on + strand, within Echvi_2899 at 3474.880 kb on - strand, within Echvi_2899 at 3474.880 kb on - strand, within Echvi_2899 at 3474.901 kb on - strand, within Echvi_2899 at 3474.901 kb on - strand, within Echvi_2899 at 3474.901 kb on - strand, within Echvi_2899 at 3474.901 kb on - strand, within Echvi_2899 at 3474.901 kb on - strand, within Echvi_2899 at 3474.901 kb on - strand, within Echvi_2899 at 3474.960 kb on - strand, within Echvi_2899 at 3475.032 kb on + strand, within Echvi_2899 at 3475.062 kb on + strand at 3475.064 kb on + strand at 3475.064 kb on + strand at 3475.064 kb on + strand at 3475.065 kb on - strand at 3475.065 kb on - strand at 3475.065 kb on - strand at 3475.065 kb on - strand at 3475.084 kb on + strand at 3475.101 kb on + strand at 3475.101 kb on + strand at 3475.121 kb on - strand at 3475.159 kb on + strand at 3475.159 kb on + strand at 3475.209 kb on - strand at 3475.213 kb on - strand, within Echvi_2900 at 3475.236 kb on + strand, within Echvi_2900 at 3475.245 kb on + strand, within Echvi_2900 at 3475.261 kb on + strand, within Echvi_2900 at 3475.261 kb on + strand, within Echvi_2900 at 3475.262 kb on - strand, within Echvi_2900 at 3475.262 kb on - strand, within Echvi_2900 at 3475.262 kb on - strand, within Echvi_2900 at 3475.262 kb on - strand, within Echvi_2900 at 3475.262 kb on - strand, within Echvi_2900 at 3475.262 kb on - strand, within Echvi_2900 at 3475.262 kb on - strand, within Echvi_2900 at 3475.262 kb on - strand, within Echvi_2900 at 3475.285 kb on + strand, within Echvi_2900 at 3475.313 kb on + strand at 3475.392 kb on - strand at 3475.426 kb on - strand at 3475.428 kb on - strand at 3475.428 kb on - strand at 3475.429 kb on + strand at 3475.429 kb on + strand at 3475.429 kb on + strand at 3475.430 kb on - strand at 3475.474 kb on + strand at 3475.603 kb on + strand, within Echvi_2901 at 3475.603 kb on + strand, within Echvi_2901 at 3475.652 kb on + strand, within Echvi_2901 at 3475.652 kb on + strand, within Echvi_2901 at 3475.652 kb on + strand, within Echvi_2901 at 3475.708 kb on + strand, within Echvi_2901 at 3475.721 kb on + strand, within Echvi_2901 at 3475.722 kb on - strand, within Echvi_2901 at 3475.755 kb on + strand, within Echvi_2901 at 3475.828 kb on - strand, within Echvi_2901 at 3475.870 kb on - strand, within Echvi_2901 at 3475.879 kb on - strand, within Echvi_2901 at 3475.934 kb on + strand, within Echvi_2901 at 3475.934 kb on + strand, within Echvi_2901 at 3475.934 kb on + strand, within Echvi_2901 at 3475.946 kb on + strand, within Echvi_2901 at 3475.979 kb on - strand, within Echvi_2901 at 3475.979 kb on - strand, within Echvi_2901 at 3475.979 kb on - strand, within Echvi_2901 at 3475.980 kb on + strand, within Echvi_2901 at 3475.981 kb on - strand, within Echvi_2901 at 3476.062 kb on + strand, within Echvi_2901 at 3476.121 kb on + strand, within Echvi_2901 at 3476.121 kb on + strand, within Echvi_2901 at 3476.122 kb on - strand, within Echvi_2901 at 3476.122 kb on - strand, within Echvi_2901 at 3476.146 kb on + strand, within Echvi_2901 at 3476.206 kb on + strand, within Echvi_2901 at 3476.328 kb on + strand, within Echvi_2901 at 3476.397 kb on + strand, within Echvi_2901 at 3476.397 kb on + strand, within Echvi_2901 at 3476.398 kb on - strand, within Echvi_2901 at 3476.481 kb on + strand at 3476.482 kb on - strand at 3476.493 kb on + strand at 3476.493 kb on + strand at 3476.494 kb on - strand at 3476.494 kb on - strand at 3476.494 kb on - strand at 3476.494 kb on - strand at 3476.494 kb on - strand at 3476.549 kb on - strand at 3476.567 kb on + strand at 3476.591 kb on + strand at 3476.654 kb on + strand at 3476.654 kb on + strand at 3476.702 kb on - strand at 3476.706 kb on + strand, within Echvi_2902 at 3476.706 kb on + strand, within Echvi_2902 at 3476.706 kb on + strand, within Echvi_2902 at 3476.709 kb on - strand, within Echvi_2902 at 3476.709 kb on - strand, within Echvi_2902 at 3476.830 kb on + strand, within Echvi_2902 at 3476.851 kb on + strand, within Echvi_2902 at 3476.851 kb on + strand, within Echvi_2902 at 3476.852 kb on - strand, within Echvi_2902 at 3476.900 kb on - strand, within Echvi_2902 at 3476.904 kb on + strand, within Echvi_2902 at 3476.904 kb on + strand, within Echvi_2902 at 3476.905 kb on - strand, within Echvi_2902 at 3476.905 kb on - strand, within Echvi_2902 at 3477.022 kb on + strand, within Echvi_2902 at 3477.145 kb on - strand, within Echvi_2902 at 3477.155 kb on - strand, within Echvi_2902 at 3477.155 kb on - strand, within Echvi_2902 at 3477.235 kb on - strand, within Echvi_2902 at 3477.239 kb on + strand, within Echvi_2902 at 3477.404 kb on + strand, within Echvi_2902 at 3477.404 kb on + strand, within Echvi_2902 at 3477.406 kb on + strand, within Echvi_2902 at 3477.406 kb on + strand, within Echvi_2902 at 3477.469 kb on + strand, within Echvi_2902 at 3477.469 kb on + strand, within Echvi_2902 at 3477.469 kb on + strand, within Echvi_2902 at 3477.469 kb on + strand, within Echvi_2902 at 3477.470 kb on - strand, within Echvi_2902 at 3477.491 kb on + strand, within Echvi_2902 at 3477.499 kb on + strand, within Echvi_2902
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,474,437 + Echvi_2899 0.50 +1.2 3,474,438 - Echvi_2899 0.50 -1.0 3,474,438 - Echvi_2899 0.50 -0.8 3,474,488 + Echvi_2899 0.54 +3.4 3,474,515 + Echvi_2899 0.55 -2.7 3,474,516 - Echvi_2899 0.55 -0.0 3,474,563 + Echvi_2899 0.58 -0.1 3,474,581 + Echvi_2899 0.60 -1.7 3,474,601 + Echvi_2899 0.61 -0.2 3,474,602 - Echvi_2899 0.61 +0.6 3,474,710 - Echvi_2899 0.68 +1.9 3,474,750 - Echvi_2899 0.70 +0.5 3,474,836 + Echvi_2899 0.76 +0.5 3,474,837 - Echvi_2899 0.76 +0.3 3,474,879 + Echvi_2899 0.79 -0.6 3,474,880 - Echvi_2899 0.79 +3.7 3,474,880 - Echvi_2899 0.79 -0.3 3,474,901 - Echvi_2899 0.80 +1.5 3,474,901 - Echvi_2899 0.80 -1.4 3,474,901 - Echvi_2899 0.80 +1.6 3,474,901 - Echvi_2899 0.80 -0.2 3,474,901 - Echvi_2899 0.80 +0.4 3,474,901 - Echvi_2899 0.80 +0.5 3,474,960 - Echvi_2899 0.84 +1.2 3,475,032 + Echvi_2899 0.89 +0.0 3,475,062 + +1.3 3,475,064 + +1.9 3,475,064 + -1.9 3,475,064 + -0.8 3,475,065 - +0.5 3,475,065 - -0.3 3,475,065 - -0.2 3,475,065 - +0.6 3,475,084 + +0.6 3,475,101 + -1.5 3,475,101 + +0.5 3,475,121 - -2.3 3,475,159 + +0.2 3,475,159 + -0.7 3,475,209 - -2.2 3,475,213 - Echvi_2900 0.46 +0.8 3,475,236 + Echvi_2900 0.59 +1.7 3,475,245 + Echvi_2900 0.63 +0.5 3,475,261 + Echvi_2900 0.72 -0.4 3,475,261 + Echvi_2900 0.72 +2.0 3,475,262 - Echvi_2900 0.73 -0.5 3,475,262 - Echvi_2900 0.73 -0.1 3,475,262 - Echvi_2900 0.73 +1.3 3,475,262 - Echvi_2900 0.73 -1.7 3,475,262 - Echvi_2900 0.73 -1.0 3,475,262 - Echvi_2900 0.73 +0.1 3,475,262 - Echvi_2900 0.73 +0.1 3,475,262 - Echvi_2900 0.73 +1.5 3,475,285 + Echvi_2900 0.85 +2.0 3,475,313 + +0.0 3,475,392 - -1.4 3,475,426 - -1.3 3,475,428 - -0.7 3,475,428 - +0.7 3,475,429 + +1.4 3,475,429 + -1.0 3,475,429 + +0.7 3,475,430 - -2.6 3,475,474 + +1.4 3,475,603 + Echvi_2901 0.15 -3.2 3,475,603 + Echvi_2901 0.15 -1.4 3,475,652 + Echvi_2901 0.20 +0.4 3,475,652 + Echvi_2901 0.20 -0.8 3,475,652 + Echvi_2901 0.20 -0.5 3,475,708 + Echvi_2901 0.25 +1.9 3,475,721 + Echvi_2901 0.26 -1.0 3,475,722 - Echvi_2901 0.26 +0.6 3,475,755 + Echvi_2901 0.29 -1.9 3,475,828 - Echvi_2901 0.36 -0.7 3,475,870 - Echvi_2901 0.40 -1.0 3,475,879 - Echvi_2901 0.41 -0.1 3,475,934 + Echvi_2901 0.46 +0.9 3,475,934 + Echvi_2901 0.46 -2.3 3,475,934 + Echvi_2901 0.46 -0.0 3,475,946 + Echvi_2901 0.47 -1.3 3,475,979 - Echvi_2901 0.50 -1.7 3,475,979 - Echvi_2901 0.50 +0.6 3,475,979 - Echvi_2901 0.50 -1.3 3,475,980 + Echvi_2901 0.50 -0.4 3,475,981 - Echvi_2901 0.50 -1.0 3,476,062 + Echvi_2901 0.57 +1.6 3,476,121 + Echvi_2901 0.63 -0.3 3,476,121 + Echvi_2901 0.63 +0.3 3,476,122 - Echvi_2901 0.63 +0.9 3,476,122 - Echvi_2901 0.63 +0.8 3,476,146 + Echvi_2901 0.65 -1.0 3,476,206 + Echvi_2901 0.71 -2.7 3,476,328 + Echvi_2901 0.82 -1.7 3,476,397 + Echvi_2901 0.88 -1.5 3,476,397 + Echvi_2901 0.88 +0.3 3,476,398 - Echvi_2901 0.88 -2.4 3,476,481 + -2.5 3,476,482 - +0.4 3,476,493 + +0.6 3,476,493 + +0.3 3,476,494 - -0.3 3,476,494 - -1.4 3,476,494 - -1.5 3,476,494 - +0.4 3,476,494 - +0.4 3,476,549 - -0.4 3,476,567 + +0.4 3,476,591 + -1.4 3,476,654 + -0.1 3,476,654 + -0.2 3,476,702 - -0.8 3,476,706 + Echvi_2902 0.10 -1.5 3,476,706 + Echvi_2902 0.10 +2.5 3,476,706 + Echvi_2902 0.10 -2.1 3,476,709 - Echvi_2902 0.10 -0.4 3,476,709 - Echvi_2902 0.10 +1.8 3,476,830 + Echvi_2902 0.19 -0.8 3,476,851 + Echvi_2902 0.20 -0.1 3,476,851 + Echvi_2902 0.20 +2.3 3,476,852 - Echvi_2902 0.20 +0.1 3,476,900 - Echvi_2902 0.24 -1.8 3,476,904 + Echvi_2902 0.24 -0.5 3,476,904 + Echvi_2902 0.24 +0.3 3,476,905 - Echvi_2902 0.24 -0.0 3,476,905 - Echvi_2902 0.24 -2.3 3,477,022 + Echvi_2902 0.33 -0.5 3,477,145 - Echvi_2902 0.41 +1.0 3,477,155 - Echvi_2902 0.42 -2.7 3,477,155 - Echvi_2902 0.42 -0.0 3,477,235 - Echvi_2902 0.48 -1.8 3,477,239 + Echvi_2902 0.48 +0.4 3,477,404 + Echvi_2902 0.60 +0.3 3,477,404 + Echvi_2902 0.60 -2.1 3,477,406 + Echvi_2902 0.60 +0.8 3,477,406 + Echvi_2902 0.60 +0.4 3,477,469 + Echvi_2902 0.64 +1.9 3,477,469 + Echvi_2902 0.64 +0.9 3,477,469 + Echvi_2902 0.64 +0.2 3,477,469 + Echvi_2902 0.64 +0.6 3,477,470 - Echvi_2902 0.65 -3.7 3,477,491 + Echvi_2902 0.66 -0.4 3,477,499 + Echvi_2902 0.67 +0.0
Or see this region's nucleotide sequence