Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2761

Experiment: L-Phenylalanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_2760 and Echvi_2761 are separated by 312 nucleotidesEchvi_2761 and Echvi_2762 are separated by 520 nucleotides Echvi_2760: Echvi_2760 - Signal transduction histidine kinase, at 3,287,870 to 3,291,925 _2760 Echvi_2761: Echvi_2761 - hypothetical protein, at 3,292,238 to 3,292,390 _2761 Echvi_2762: Echvi_2762 - TonB-linked outer membrane protein, SusC/RagA family, at 3,292,911 to 3,296,090 _2762 Position (kb) 3292 3293Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3291.276 kb on + strand, within Echvi_2760at 3291.311 kb on - strand, within Echvi_2760at 3291.341 kb on + strand, within Echvi_2760at 3291.341 kb on + strand, within Echvi_2760at 3291.341 kb on + strand, within Echvi_2760at 3291.359 kb on + strand, within Echvi_2760at 3291.360 kb on - strand, within Echvi_2760at 3291.366 kb on - strand, within Echvi_2760at 3291.370 kb on + strand, within Echvi_2760at 3291.371 kb on - strand, within Echvi_2760at 3291.371 kb on - strand, within Echvi_2760at 3291.371 kb on - strand, within Echvi_2760at 3291.371 kb on - strand, within Echvi_2760at 3291.484 kb on - strand, within Echvi_2760at 3291.487 kb on + strand, within Echvi_2760at 3291.591 kb on + strandat 3291.591 kb on + strandat 3291.592 kb on - strandat 3291.592 kb on - strandat 3291.598 kb on - strandat 3291.623 kb on + strandat 3291.625 kb on + strandat 3291.626 kb on - strandat 3291.665 kb on - strandat 3291.665 kb on - strandat 3291.760 kb on + strandat 3291.780 kb on - strandat 3291.800 kb on - strandat 3291.840 kb on + strandat 3291.890 kb on + strandat 3291.890 kb on + strandat 3291.891 kb on - strandat 3291.896 kb on + strandat 3291.914 kb on - strandat 3291.926 kb on - strandat 3291.956 kb on - strandat 3292.163 kb on - strandat 3292.167 kb on + strandat 3292.173 kb on + strandat 3292.174 kb on - strandat 3292.174 kb on - strandat 3292.179 kb on + strandat 3292.211 kb on - strandat 3292.228 kb on - strandat 3292.228 kb on - strandat 3292.240 kb on - strandat 3292.244 kb on - strandat 3292.333 kb on + strand, within Echvi_2761at 3292.333 kb on + strand, within Echvi_2761at 3292.334 kb on - strand, within Echvi_2761at 3292.334 kb on - strand, within Echvi_2761at 3292.392 kb on + strandat 3292.433 kb on - strandat 3292.438 kb on - strandat 3292.486 kb on + strandat 3292.487 kb on - strandat 3292.490 kb on + strandat 3292.666 kb on + strandat 3292.705 kb on + strandat 3292.705 kb on + strandat 3292.725 kb on - strandat 3292.725 kb on - strandat 3292.725 kb on - strandat 3292.737 kb on - strandat 3292.778 kb on + strandat 3292.804 kb on + strandat 3292.804 kb on + strandat 3292.805 kb on - strandat 3292.805 kb on - strandat 3292.805 kb on - strandat 3292.805 kb on - strandat 3292.808 kb on + strandat 3292.809 kb on - strandat 3292.809 kb on - strandat 3292.835 kb on + strandat 3292.835 kb on + strandat 3292.835 kb on + strandat 3292.835 kb on + strandat 3292.836 kb on - strandat 3292.836 kb on - strandat 3292.838 kb on + strandat 3292.838 kb on + strandat 3292.838 kb on + strandat 3292.839 kb on - strandat 3292.840 kb on + strandat 3292.840 kb on + strandat 3292.841 kb on - strandat 3292.841 kb on - strandat 3292.841 kb on - strandat 3292.841 kb on - strandat 3292.855 kb on + strandat 3292.856 kb on - strandat 3292.856 kb on - strandat 3292.906 kb on + strandat 3292.959 kb on - strandat 3292.963 kb on - strandat 3293.004 kb on - strandat 3293.126 kb on + strandat 3293.163 kb on - strandat 3293.194 kb on + strandat 3293.195 kb on - strandat 3293.217 kb on - strandat 3293.217 kb on - strandat 3293.217 kb on - strandat 3293.237 kb on - strand, within Echvi_2762

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
remove
3,291,276 + Echvi_2760 0.84 +1.0
3,291,311 - Echvi_2760 0.85 +1.2
3,291,341 + Echvi_2760 0.86 -0.5
3,291,341 + Echvi_2760 0.86 +0.1
3,291,341 + Echvi_2760 0.86 -0.4
3,291,359 + Echvi_2760 0.86 -2.3
3,291,360 - Echvi_2760 0.86 +0.6
3,291,366 - Echvi_2760 0.86 -0.3
3,291,370 + Echvi_2760 0.86 +0.1
3,291,371 - Echvi_2760 0.86 +0.3
3,291,371 - Echvi_2760 0.86 -0.4
3,291,371 - Echvi_2760 0.86 +0.2
3,291,371 - Echvi_2760 0.86 +1.9
3,291,484 - Echvi_2760 0.89 +0.3
3,291,487 + Echvi_2760 0.89 +1.2
3,291,591 + -0.8
3,291,591 + -1.6
3,291,592 - +0.4
3,291,592 - +0.8
3,291,598 - +0.4
3,291,623 + -0.3
3,291,625 + +1.0
3,291,626 - -0.5
3,291,665 - +0.0
3,291,665 - +1.3
3,291,760 + -1.5
3,291,780 - -0.7
3,291,800 - -1.7
3,291,840 + +0.2
3,291,890 + -0.6
3,291,890 + +0.5
3,291,891 - +0.2
3,291,896 + +1.0
3,291,914 - +1.2
3,291,926 - -0.6
3,291,956 - +0.0
3,292,163 - +0.2
3,292,167 + -0.1
3,292,173 + +0.1
3,292,174 - +1.0
3,292,174 - +1.1
3,292,179 + +0.1
3,292,211 - -1.6
3,292,228 - -1.0
3,292,228 - +0.4
3,292,240 - -0.9
3,292,244 - -0.2
3,292,333 + Echvi_2761 0.62 +0.9
3,292,333 + Echvi_2761 0.62 -0.3
3,292,334 - Echvi_2761 0.63 +0.7
3,292,334 - Echvi_2761 0.63 +0.8
3,292,392 + +1.3
3,292,433 - +0.7
3,292,438 - -0.8
3,292,486 + +0.6
3,292,487 - -1.5
3,292,490 + -1.0
3,292,666 + +0.5
3,292,705 + -0.2
3,292,705 + +0.1
3,292,725 - -2.1
3,292,725 - +0.8
3,292,725 - +2.0
3,292,737 - +0.5
3,292,778 + -1.8
3,292,804 + -0.2
3,292,804 + +1.5
3,292,805 - +0.0
3,292,805 - +0.2
3,292,805 - +0.3
3,292,805 - +1.8
3,292,808 + -0.6
3,292,809 - -0.9
3,292,809 - -0.0
3,292,835 + +3.2
3,292,835 + -1.5
3,292,835 + -1.5
3,292,835 + -1.2
3,292,836 - +1.0
3,292,836 - +1.0
3,292,838 + -2.3
3,292,838 + +0.4
3,292,838 + -1.3
3,292,839 - +1.0
3,292,840 + -1.9
3,292,840 + -2.5
3,292,841 - -0.6
3,292,841 - +0.4
3,292,841 - +1.2
3,292,841 - -0.1
3,292,855 + -0.6
3,292,856 - +1.9
3,292,856 - +1.1
3,292,906 + +0.3
3,292,959 - -1.0
3,292,963 - +0.7
3,293,004 - +0.2
3,293,126 + +0.6
3,293,163 - -0.4
3,293,194 + +0.0
3,293,195 - -0.5
3,293,217 - +1.3
3,293,217 - -0.5
3,293,217 - -0.8
3,293,237 - Echvi_2762 0.10 -0.8

Or see this region's nucleotide sequence