Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2660

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2659 and Echvi_2660 are separated by 17 nucleotidesEchvi_2660 and Echvi_2661 are separated by 54 nucleotides Echvi_2659: Echvi_2659 - TonB-linked outer membrane protein, SusC/RagA family, at 3,150,619 to 3,153,636 _2659 Echvi_2660: Echvi_2660 - SusD family., at 3,153,654 to 3,155,429 _2660 Echvi_2661: Echvi_2661 - hypothetical protein, at 3,155,484 to 3,156,509 _2661 Position (kb) 3153 3154 3155 3156Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3152.715 kb on - strand, within Echvi_2659at 3152.769 kb on + strand, within Echvi_2659at 3152.769 kb on + strand, within Echvi_2659at 3152.770 kb on - strand, within Echvi_2659at 3152.770 kb on - strand, within Echvi_2659at 3152.770 kb on - strand, within Echvi_2659at 3152.770 kb on - strand, within Echvi_2659at 3152.770 kb on - strand, within Echvi_2659at 3152.774 kb on - strand, within Echvi_2659at 3152.774 kb on - strand, within Echvi_2659at 3152.774 kb on - strand, within Echvi_2659at 3152.783 kb on - strand, within Echvi_2659at 3152.821 kb on + strand, within Echvi_2659at 3152.821 kb on + strand, within Echvi_2659at 3152.822 kb on - strand, within Echvi_2659at 3152.822 kb on - strand, within Echvi_2659at 3152.823 kb on + strand, within Echvi_2659at 3152.824 kb on - strand, within Echvi_2659at 3152.824 kb on - strand, within Echvi_2659at 3152.830 kb on + strand, within Echvi_2659at 3152.924 kb on - strand, within Echvi_2659at 3153.104 kb on - strand, within Echvi_2659at 3153.104 kb on - strand, within Echvi_2659at 3153.150 kb on - strand, within Echvi_2659at 3153.151 kb on + strand, within Echvi_2659at 3153.151 kb on + strand, within Echvi_2659at 3153.152 kb on - strand, within Echvi_2659at 3153.263 kb on - strand, within Echvi_2659at 3153.284 kb on - strand, within Echvi_2659at 3153.284 kb on - strand, within Echvi_2659at 3153.306 kb on + strand, within Echvi_2659at 3153.307 kb on - strand, within Echvi_2659at 3153.307 kb on - strand, within Echvi_2659at 3153.311 kb on - strand, within Echvi_2659at 3153.361 kb on - strandat 3153.424 kb on + strandat 3153.424 kb on + strandat 3153.425 kb on - strandat 3153.469 kb on - strandat 3153.521 kb on - strandat 3153.607 kb on + strandat 3153.608 kb on - strandat 3153.610 kb on - strandat 3153.635 kb on - strandat 3153.638 kb on + strandat 3153.686 kb on + strandat 3153.784 kb on + strandat 3153.785 kb on - strandat 3153.969 kb on + strand, within Echvi_2660at 3154.027 kb on + strand, within Echvi_2660at 3154.028 kb on - strand, within Echvi_2660at 3154.065 kb on + strand, within Echvi_2660at 3154.086 kb on - strand, within Echvi_2660at 3154.089 kb on + strand, within Echvi_2660at 3154.092 kb on + strand, within Echvi_2660at 3154.092 kb on + strand, within Echvi_2660at 3154.092 kb on + strand, within Echvi_2660at 3154.093 kb on - strand, within Echvi_2660at 3154.093 kb on - strand, within Echvi_2660at 3154.093 kb on - strand, within Echvi_2660at 3154.093 kb on - strand, within Echvi_2660at 3154.169 kb on - strand, within Echvi_2660at 3154.169 kb on - strand, within Echvi_2660at 3154.181 kb on - strand, within Echvi_2660at 3154.211 kb on + strand, within Echvi_2660at 3154.211 kb on + strand, within Echvi_2660at 3154.211 kb on + strand, within Echvi_2660at 3154.212 kb on - strand, within Echvi_2660at 3154.224 kb on + strand, within Echvi_2660at 3154.239 kb on - strand, within Echvi_2660at 3154.266 kb on + strand, within Echvi_2660at 3154.268 kb on + strand, within Echvi_2660at 3154.268 kb on + strand, within Echvi_2660at 3154.269 kb on - strand, within Echvi_2660at 3154.305 kb on + strand, within Echvi_2660at 3154.335 kb on + strand, within Echvi_2660at 3154.475 kb on + strand, within Echvi_2660at 3154.479 kb on + strand, within Echvi_2660at 3154.479 kb on + strand, within Echvi_2660at 3154.479 kb on + strand, within Echvi_2660at 3154.479 kb on + strand, within Echvi_2660at 3154.479 kb on + strand, within Echvi_2660at 3154.480 kb on - strand, within Echvi_2660at 3154.480 kb on - strand, within Echvi_2660at 3154.480 kb on - strand, within Echvi_2660at 3154.480 kb on - strand, within Echvi_2660at 3154.480 kb on - strand, within Echvi_2660at 3154.480 kb on - strand, within Echvi_2660at 3154.480 kb on - strand, within Echvi_2660at 3154.513 kb on + strand, within Echvi_2660at 3154.513 kb on + strand, within Echvi_2660at 3154.550 kb on + strand, within Echvi_2660at 3154.551 kb on - strand, within Echvi_2660at 3154.718 kb on + strand, within Echvi_2660at 3154.777 kb on - strand, within Echvi_2660at 3154.777 kb on - strand, within Echvi_2660at 3154.921 kb on - strand, within Echvi_2660at 3154.923 kb on + strand, within Echvi_2660at 3154.924 kb on - strand, within Echvi_2660at 3154.924 kb on - strand, within Echvi_2660at 3154.924 kb on - strand, within Echvi_2660at 3154.924 kb on - strand, within Echvi_2660at 3154.924 kb on - strand, within Echvi_2660at 3154.924 kb on - strand, within Echvi_2660at 3154.951 kb on + strand, within Echvi_2660at 3154.991 kb on - strand, within Echvi_2660at 3155.029 kb on - strand, within Echvi_2660at 3155.091 kb on + strand, within Echvi_2660at 3155.129 kb on - strand, within Echvi_2660at 3155.151 kb on + strand, within Echvi_2660at 3155.151 kb on + strand, within Echvi_2660at 3155.317 kb on - strandat 3155.326 kb on + strandat 3155.358 kb on - strandat 3155.358 kb on - strandat 3155.365 kb on - strandat 3155.441 kb on - strandat 3155.470 kb on - strandat 3155.503 kb on + strandat 3155.504 kb on - strandat 3155.630 kb on + strand, within Echvi_2661at 3155.631 kb on - strand, within Echvi_2661at 3155.631 kb on - strand, within Echvi_2661at 3155.782 kb on + strand, within Echvi_2661at 3155.783 kb on - strand, within Echvi_2661at 3155.783 kb on - strand, within Echvi_2661at 3155.803 kb on - strand, within Echvi_2661at 3155.805 kb on + strand, within Echvi_2661at 3155.806 kb on - strand, within Echvi_2661at 3155.806 kb on - strand, within Echvi_2661at 3155.867 kb on - strand, within Echvi_2661at 3155.867 kb on - strand, within Echvi_2661at 3155.929 kb on + strand, within Echvi_2661at 3155.930 kb on - strand, within Echvi_2661at 3156.058 kb on - strand, within Echvi_2661at 3156.058 kb on - strand, within Echvi_2661at 3156.131 kb on - strand, within Echvi_2661at 3156.131 kb on - strand, within Echvi_2661at 3156.131 kb on - strand, within Echvi_2661at 3156.225 kb on - strand, within Echvi_2661at 3156.225 kb on - strand, within Echvi_2661at 3156.397 kb on + strand, within Echvi_2661at 3156.400 kb on - strand, within Echvi_2661at 3156.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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3,152,715 - Echvi_2659 0.69 +0.7
3,152,769 + Echvi_2659 0.71 -0.1
3,152,769 + Echvi_2659 0.71 -0.3
3,152,770 - Echvi_2659 0.71 +1.0
3,152,770 - Echvi_2659 0.71 -0.6
3,152,770 - Echvi_2659 0.71 +1.4
3,152,770 - Echvi_2659 0.71 +0.6
3,152,770 - Echvi_2659 0.71 +0.8
3,152,774 - Echvi_2659 0.71 +0.1
3,152,774 - Echvi_2659 0.71 -1.9
3,152,774 - Echvi_2659 0.71 +0.2
3,152,783 - Echvi_2659 0.72 -0.4
3,152,821 + Echvi_2659 0.73 +1.8
3,152,821 + Echvi_2659 0.73 +0.0
3,152,822 - Echvi_2659 0.73 -0.5
3,152,822 - Echvi_2659 0.73 -0.2
3,152,823 + Echvi_2659 0.73 +0.3
3,152,824 - Echvi_2659 0.73 +0.2
3,152,824 - Echvi_2659 0.73 -0.7
3,152,830 + Echvi_2659 0.73 +0.0
3,152,924 - Echvi_2659 0.76 -0.8
3,153,104 - Echvi_2659 0.82 -0.1
3,153,104 - Echvi_2659 0.82 -0.7
3,153,150 - Echvi_2659 0.84 -0.3
3,153,151 + Echvi_2659 0.84 +0.0
3,153,151 + Echvi_2659 0.84 +0.0
3,153,152 - Echvi_2659 0.84 -0.3
3,153,263 - Echvi_2659 0.88 +0.3
3,153,284 - Echvi_2659 0.88 -2.7
3,153,284 - Echvi_2659 0.88 -1.8
3,153,306 + Echvi_2659 0.89 -1.9
3,153,307 - Echvi_2659 0.89 -1.6
3,153,307 - Echvi_2659 0.89 -1.2
3,153,311 - Echvi_2659 0.89 -0.7
3,153,361 - -0.8
3,153,424 + +1.8
3,153,424 + -0.9
3,153,425 - -0.3
3,153,469 - -0.1
3,153,521 - -2.2
3,153,607 + +0.0
3,153,608 - +1.9
3,153,610 - -1.7
3,153,635 - +1.5
3,153,638 + +1.9
3,153,686 + +1.5
3,153,784 + -0.5
3,153,785 - +0.9
3,153,969 + Echvi_2660 0.18 -0.1
3,154,027 + Echvi_2660 0.21 -0.3
3,154,028 - Echvi_2660 0.21 +3.2
3,154,065 + Echvi_2660 0.23 -1.5
3,154,086 - Echvi_2660 0.24 -2.5
3,154,089 + Echvi_2660 0.24 +0.6
3,154,092 + Echvi_2660 0.25 +1.0
3,154,092 + Echvi_2660 0.25 -2.3
3,154,092 + Echvi_2660 0.25 -3.2
3,154,093 - Echvi_2660 0.25 -0.8
3,154,093 - Echvi_2660 0.25 -1.7
3,154,093 - Echvi_2660 0.25 -0.8
3,154,093 - Echvi_2660 0.25 +0.2
3,154,169 - Echvi_2660 0.29 -0.8
3,154,169 - Echvi_2660 0.29 +0.8
3,154,181 - Echvi_2660 0.30 +0.1
3,154,211 + Echvi_2660 0.31 -0.7
3,154,211 + Echvi_2660 0.31 -1.8
3,154,211 + Echvi_2660 0.31 +0.9
3,154,212 - Echvi_2660 0.31 +0.5
3,154,224 + Echvi_2660 0.32 +0.1
3,154,239 - Echvi_2660 0.33 -1.4
3,154,266 + Echvi_2660 0.34 -0.0
3,154,268 + Echvi_2660 0.35 +0.0
3,154,268 + Echvi_2660 0.35 -1.2
3,154,269 - Echvi_2660 0.35 +0.5
3,154,305 + Echvi_2660 0.37 +0.6
3,154,335 + Echvi_2660 0.38 -2.3
3,154,475 + Echvi_2660 0.46 -0.1
3,154,479 + Echvi_2660 0.46 -2.1
3,154,479 + Echvi_2660 0.46 -2.7
3,154,479 + Echvi_2660 0.46 -0.0
3,154,479 + Echvi_2660 0.46 -0.7
3,154,479 + Echvi_2660 0.46 -0.9
3,154,480 - Echvi_2660 0.47 -1.4
3,154,480 - Echvi_2660 0.47 -1.4
3,154,480 - Echvi_2660 0.47 -2.2
3,154,480 - Echvi_2660 0.47 +1.5
3,154,480 - Echvi_2660 0.47 -1.6
3,154,480 - Echvi_2660 0.47 +1.4
3,154,480 - Echvi_2660 0.47 +0.8
3,154,513 + Echvi_2660 0.48 -1.0
3,154,513 + Echvi_2660 0.48 -1.8
3,154,550 + Echvi_2660 0.50 -0.8
3,154,551 - Echvi_2660 0.51 +1.4
3,154,718 + Echvi_2660 0.60 +0.3
3,154,777 - Echvi_2660 0.63 +1.0
3,154,777 - Echvi_2660 0.63 +0.5
3,154,921 - Echvi_2660 0.71 -1.3
3,154,923 + Echvi_2660 0.71 +1.0
3,154,924 - Echvi_2660 0.72 +0.0
3,154,924 - Echvi_2660 0.72 -0.5
3,154,924 - Echvi_2660 0.72 -1.0
3,154,924 - Echvi_2660 0.72 -2.3
3,154,924 - Echvi_2660 0.72 -0.0
3,154,924 - Echvi_2660 0.72 +1.2
3,154,951 + Echvi_2660 0.73 +2.4
3,154,991 - Echvi_2660 0.75 +0.9
3,155,029 - Echvi_2660 0.77 -1.0
3,155,091 + Echvi_2660 0.81 -1.4
3,155,129 - Echvi_2660 0.83 -0.2
3,155,151 + Echvi_2660 0.84 +1.0
3,155,151 + Echvi_2660 0.84 +0.8
3,155,317 - +0.2
3,155,326 + -0.6
3,155,358 - -0.6
3,155,358 - +0.2
3,155,365 - +0.7
3,155,441 - -0.6
3,155,470 - +2.0
3,155,503 + +0.8
3,155,504 - +0.8
3,155,630 + Echvi_2661 0.14 -0.9
3,155,631 - Echvi_2661 0.14 -2.4
3,155,631 - Echvi_2661 0.14 +0.1
3,155,782 + Echvi_2661 0.29 -1.0
3,155,783 - Echvi_2661 0.29 +0.4
3,155,783 - Echvi_2661 0.29 +1.2
3,155,803 - Echvi_2661 0.31 -0.0
3,155,805 + Echvi_2661 0.31 +2.0
3,155,806 - Echvi_2661 0.31 +0.2
3,155,806 - Echvi_2661 0.31 -0.6
3,155,867 - Echvi_2661 0.37 +0.4
3,155,867 - Echvi_2661 0.37 -2.6
3,155,929 + Echvi_2661 0.43 -1.3
3,155,930 - Echvi_2661 0.43 -0.1
3,156,058 - Echvi_2661 0.56 -0.1
3,156,058 - Echvi_2661 0.56 -1.7
3,156,131 - Echvi_2661 0.63 -0.1
3,156,131 - Echvi_2661 0.63 -0.6
3,156,131 - Echvi_2661 0.63 +1.0
3,156,225 - Echvi_2661 0.72 +0.4
3,156,225 - Echvi_2661 0.72 +0.1
3,156,397 + Echvi_2661 0.89 -0.8
3,156,400 - Echvi_2661 0.89 +0.2
3,156,409 - -0.9

Or see this region's nucleotide sequence