Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2635

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2633 and Echvi_2634 are separated by 76 nucleotidesEchvi_2634 and Echvi_2635 overlap by 26 nucleotidesEchvi_2635 and Echvi_2636 are separated by 651 nucleotides Echvi_2633: Echvi_2633 - gamma-glutamylphosphate reductase (EC 1.2.1.41) (from data), at 3,120,871 to 3,122,070 _2633 Echvi_2634: Echvi_2634 - glutamate 5-kinase, at 3,122,147 to 3,122,953 _2634 Echvi_2635: Echvi_2635 - pyrroline-5-carboxylate reductase, at 3,122,928 to 3,123,743 _2635 Echvi_2636: Echvi_2636 - Autotransporter beta-domain., at 3,124,395 to 3,125,198 _2636 Position (kb) 3122 3123 3124Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3121.935 kb on - strand, within Echvi_2633at 3122.063 kb on - strandat 3122.063 kb on - strandat 3122.116 kb on + strandat 3122.116 kb on + strandat 3122.117 kb on - strandat 3122.148 kb on + strandat 3122.227 kb on + strandat 3122.228 kb on - strand, within Echvi_2634at 3122.265 kb on - strand, within Echvi_2634at 3122.275 kb on + strand, within Echvi_2634at 3122.276 kb on - strand, within Echvi_2634at 3122.293 kb on + strand, within Echvi_2634at 3122.293 kb on + strand, within Echvi_2634at 3122.398 kb on + strand, within Echvi_2634at 3122.399 kb on - strand, within Echvi_2634at 3122.400 kb on + strand, within Echvi_2634at 3122.400 kb on + strand, within Echvi_2634at 3122.643 kb on + strand, within Echvi_2634at 3122.643 kb on + strand, within Echvi_2634at 3122.643 kb on + strand, within Echvi_2634at 3122.656 kb on + strand, within Echvi_2634at 3122.656 kb on + strand, within Echvi_2634at 3122.657 kb on - strand, within Echvi_2634at 3122.661 kb on + strand, within Echvi_2634at 3122.664 kb on + strand, within Echvi_2634at 3122.722 kb on + strand, within Echvi_2634at 3122.860 kb on + strand, within Echvi_2634at 3122.900 kb on + strandat 3122.900 kb on + strandat 3122.926 kb on + strandat 3122.929 kb on + strandat 3122.969 kb on + strandat 3122.981 kb on - strandat 3123.209 kb on - strand, within Echvi_2635at 3123.209 kb on - strand, within Echvi_2635at 3123.215 kb on + strand, within Echvi_2635at 3123.215 kb on + strand, within Echvi_2635at 3123.215 kb on + strand, within Echvi_2635at 3123.216 kb on - strand, within Echvi_2635at 3123.216 kb on - strand, within Echvi_2635at 3123.216 kb on - strand, within Echvi_2635at 3123.217 kb on + strand, within Echvi_2635at 3123.217 kb on + strand, within Echvi_2635at 3123.217 kb on + strand, within Echvi_2635at 3123.218 kb on - strand, within Echvi_2635at 3123.218 kb on - strand, within Echvi_2635at 3123.257 kb on + strand, within Echvi_2635at 3123.257 kb on + strand, within Echvi_2635at 3123.293 kb on + strand, within Echvi_2635at 3123.297 kb on - strand, within Echvi_2635at 3123.353 kb on + strand, within Echvi_2635at 3123.354 kb on - strand, within Echvi_2635at 3123.376 kb on - strand, within Echvi_2635at 3123.422 kb on + strand, within Echvi_2635at 3123.422 kb on + strand, within Echvi_2635at 3123.423 kb on - strand, within Echvi_2635at 3123.423 kb on - strand, within Echvi_2635at 3123.423 kb on - strand, within Echvi_2635at 3123.437 kb on + strand, within Echvi_2635at 3123.437 kb on + strand, within Echvi_2635at 3123.438 kb on - strand, within Echvi_2635at 3123.444 kb on + strand, within Echvi_2635at 3123.444 kb on + strand, within Echvi_2635at 3123.445 kb on - strand, within Echvi_2635at 3123.529 kb on + strand, within Echvi_2635at 3123.654 kb on - strand, within Echvi_2635at 3123.654 kb on - strand, within Echvi_2635at 3123.730 kb on - strandat 3123.780 kb on + strandat 3123.797 kb on + strandat 3123.867 kb on + strandat 3123.874 kb on + strandat 3123.899 kb on - strandat 3123.939 kb on - strandat 3123.940 kb on + strandat 3123.940 kb on + strandat 3123.940 kb on + strandat 3123.944 kb on + strandat 3123.972 kb on - strandat 3123.985 kb on - strandat 3124.041 kb on + strandat 3124.041 kb on + strandat 3124.041 kb on + strandat 3124.042 kb on - strandat 3124.042 kb on - strandat 3124.042 kb on - strandat 3124.042 kb on - strandat 3124.079 kb on + strandat 3124.079 kb on + strandat 3124.079 kb on + strandat 3124.121 kb on + strandat 3124.122 kb on - strandat 3124.124 kb on - strandat 3124.124 kb on - strandat 3124.129 kb on + strandat 3124.182 kb on - strandat 3124.217 kb on + strandat 3124.228 kb on + strandat 3124.228 kb on + strandat 3124.229 kb on - strandat 3124.263 kb on - strandat 3124.269 kb on + strandat 3124.270 kb on - strandat 3124.270 kb on - strandat 3124.316 kb on - strandat 3124.331 kb on + strandat 3124.351 kb on + strandat 3124.394 kb on - strandat 3124.394 kb on - strandat 3124.394 kb on - strandat 3124.394 kb on - strandat 3124.394 kb on - strandat 3124.396 kb on + strandat 3124.530 kb on + strand, within Echvi_2636at 3124.573 kb on + strand, within Echvi_2636at 3124.573 kb on + strand, within Echvi_2636at 3124.573 kb on + strand, within Echvi_2636at 3124.574 kb on - strand, within Echvi_2636at 3124.577 kb on + strand, within Echvi_2636at 3124.577 kb on + strand, within Echvi_2636at 3124.577 kb on + strand, within Echvi_2636at 3124.577 kb on + strand, within Echvi_2636at 3124.578 kb on - strand, within Echvi_2636at 3124.578 kb on - strand, within Echvi_2636at 3124.578 kb on - strand, within Echvi_2636at 3124.589 kb on + strand, within Echvi_2636at 3124.590 kb on - strand, within Echvi_2636at 3124.590 kb on - strand, within Echvi_2636at 3124.596 kb on + strand, within Echvi_2636at 3124.597 kb on - strand, within Echvi_2636at 3124.652 kb on + strand, within Echvi_2636at 3124.655 kb on - strand, within Echvi_2636at 3124.694 kb on + strand, within Echvi_2636at 3124.695 kb on - strand, within Echvi_2636at 3124.722 kb on + strand, within Echvi_2636at 3124.722 kb on + strand, within Echvi_2636at 3124.722 kb on + strand, within Echvi_2636at 3124.722 kb on + strand, within Echvi_2636at 3124.722 kb on + strand, within Echvi_2636at 3124.723 kb on - strand, within Echvi_2636at 3124.723 kb on - strand, within Echvi_2636at 3124.723 kb on - strand, within Echvi_2636at 3124.723 kb on - strand, within Echvi_2636at 3124.723 kb on - strand, within Echvi_2636at 3124.723 kb on - strand, within Echvi_2636

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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3,121,935 - Echvi_2633 0.89 -1.1
3,122,063 - -1.0
3,122,063 - -2.4
3,122,116 + +1.0
3,122,116 + -0.1
3,122,117 - +1.2
3,122,148 + +0.2
3,122,227 + -0.7
3,122,228 - Echvi_2634 0.10 +0.6
3,122,265 - Echvi_2634 0.15 -0.2
3,122,275 + Echvi_2634 0.16 -1.3
3,122,276 - Echvi_2634 0.16 +1.7
3,122,293 + Echvi_2634 0.18 -2.7
3,122,293 + Echvi_2634 0.18 -0.7
3,122,398 + Echvi_2634 0.31 -0.2
3,122,399 - Echvi_2634 0.31 +1.1
3,122,400 + Echvi_2634 0.31 -0.5
3,122,400 + Echvi_2634 0.31 -1.2
3,122,643 + Echvi_2634 0.61 -3.4
3,122,643 + Echvi_2634 0.61 -0.9
3,122,643 + Echvi_2634 0.61 -1.3
3,122,656 + Echvi_2634 0.63 -0.9
3,122,656 + Echvi_2634 0.63 -1.2
3,122,657 - Echvi_2634 0.63 -1.9
3,122,661 + Echvi_2634 0.64 -2.1
3,122,664 + Echvi_2634 0.64 -2.8
3,122,722 + Echvi_2634 0.71 -3.2
3,122,860 + Echvi_2634 0.88 -2.5
3,122,900 + -0.4
3,122,900 + -2.3
3,122,926 + -0.8
3,122,929 + -1.5
3,122,969 + -1.2
3,122,981 - +0.7
3,123,209 - Echvi_2635 0.34 -0.4
3,123,209 - Echvi_2635 0.34 -2.5
3,123,215 + Echvi_2635 0.35 -2.3
3,123,215 + Echvi_2635 0.35 -0.4
3,123,215 + Echvi_2635 0.35 -0.5
3,123,216 - Echvi_2635 0.35 +1.0
3,123,216 - Echvi_2635 0.35 -0.5
3,123,216 - Echvi_2635 0.35 -2.5
3,123,217 + Echvi_2635 0.35 -0.6
3,123,217 + Echvi_2635 0.35 -2.4
3,123,217 + Echvi_2635 0.35 -1.8
3,123,218 - Echvi_2635 0.36 +0.6
3,123,218 - Echvi_2635 0.36 -1.0
3,123,257 + Echvi_2635 0.40 +0.0
3,123,257 + Echvi_2635 0.40 -3.2
3,123,293 + Echvi_2635 0.45 -0.6
3,123,297 - Echvi_2635 0.45 -0.8
3,123,353 + Echvi_2635 0.52 -1.7
3,123,354 - Echvi_2635 0.52 -1.3
3,123,376 - Echvi_2635 0.55 -1.4
3,123,422 + Echvi_2635 0.61 -1.8
3,123,422 + Echvi_2635 0.61 -1.3
3,123,423 - Echvi_2635 0.61 +0.6
3,123,423 - Echvi_2635 0.61 -0.5
3,123,423 - Echvi_2635 0.61 -0.1
3,123,437 + Echvi_2635 0.62 -1.8
3,123,437 + Echvi_2635 0.62 +0.5
3,123,438 - Echvi_2635 0.62 -0.3
3,123,444 + Echvi_2635 0.63 -1.1
3,123,444 + Echvi_2635 0.63 -2.2
3,123,445 - Echvi_2635 0.63 -1.2
3,123,529 + Echvi_2635 0.74 -1.3
3,123,654 - Echvi_2635 0.89 +0.3
3,123,654 - Echvi_2635 0.89 +1.6
3,123,730 - -0.5
3,123,780 + -1.7
3,123,797 + +0.9
3,123,867 + -3.0
3,123,874 + +0.2
3,123,899 - +0.1
3,123,939 - +0.6
3,123,940 + -0.3
3,123,940 + -2.0
3,123,940 + +0.5
3,123,944 + -0.0
3,123,972 - +0.3
3,123,985 - -1.1
3,124,041 + -1.1
3,124,041 + -1.6
3,124,041 + -1.4
3,124,042 - +0.6
3,124,042 - -0.6
3,124,042 - -0.9
3,124,042 - -0.4
3,124,079 + -1.7
3,124,079 + -0.4
3,124,079 + +0.7
3,124,121 + +0.3
3,124,122 - +0.5
3,124,124 - -1.9
3,124,124 - -0.4
3,124,129 + +0.0
3,124,182 - +0.3
3,124,217 + +1.9
3,124,228 + +0.4
3,124,228 + -0.1
3,124,229 - +1.0
3,124,263 - -1.9
3,124,269 + -0.4
3,124,270 - +0.5
3,124,270 - +1.7
3,124,316 - -0.0
3,124,331 + -1.5
3,124,351 + +0.8
3,124,394 - -0.5
3,124,394 - +0.8
3,124,394 - -2.0
3,124,394 - +0.0
3,124,394 - +0.4
3,124,396 + -1.0
3,124,530 + Echvi_2636 0.17 -1.1
3,124,573 + Echvi_2636 0.22 +1.1
3,124,573 + Echvi_2636 0.22 +1.0
3,124,573 + Echvi_2636 0.22 -1.1
3,124,574 - Echvi_2636 0.22 -0.4
3,124,577 + Echvi_2636 0.23 +0.4
3,124,577 + Echvi_2636 0.23 +0.7
3,124,577 + Echvi_2636 0.23 -0.2
3,124,577 + Echvi_2636 0.23 -0.3
3,124,578 - Echvi_2636 0.23 +0.5
3,124,578 - Echvi_2636 0.23 +1.4
3,124,578 - Echvi_2636 0.23 +1.3
3,124,589 + Echvi_2636 0.24 -0.6
3,124,590 - Echvi_2636 0.24 +0.2
3,124,590 - Echvi_2636 0.24 +2.5
3,124,596 + Echvi_2636 0.25 -3.2
3,124,597 - Echvi_2636 0.25 -0.7
3,124,652 + Echvi_2636 0.32 -0.1
3,124,655 - Echvi_2636 0.32 +4.0
3,124,694 + Echvi_2636 0.37 -0.1
3,124,695 - Echvi_2636 0.37 -2.2
3,124,722 + Echvi_2636 0.41 -0.1
3,124,722 + Echvi_2636 0.41 -0.4
3,124,722 + Echvi_2636 0.41 +0.5
3,124,722 + Echvi_2636 0.41 +0.0
3,124,722 + Echvi_2636 0.41 +0.5
3,124,723 - Echvi_2636 0.41 -0.1
3,124,723 - Echvi_2636 0.41 +0.5
3,124,723 - Echvi_2636 0.41 -0.1
3,124,723 - Echvi_2636 0.41 -2.0
3,124,723 - Echvi_2636 0.41 -1.0
3,124,723 - Echvi_2636 0.41 +0.1

Or see this region's nucleotide sequence