Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2633 and Echvi_2634 are separated by 76 nucleotides Echvi_2634 and Echvi_2635 overlap by 26 nucleotides Echvi_2635 and Echvi_2636 are separated by 651 nucleotides
Echvi_2633: Echvi_2633 - gamma-glutamylphosphate reductase (EC 1.2.1.41) (from data) , at 3,120,871 to 3,122,070
_2633
Echvi_2634: Echvi_2634 - glutamate 5-kinase, at 3,122,147 to 3,122,953
_2634
Echvi_2635: Echvi_2635 - pyrroline-5-carboxylate reductase, at 3,122,928 to 3,123,743
_2635
Echvi_2636: Echvi_2636 - Autotransporter beta-domain., at 3,124,395 to 3,125,198
_2636
Position (kb)
3122
3123
3124 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3121.935 kb on - strand, within Echvi_2633 at 3122.063 kb on - strand at 3122.063 kb on - strand at 3122.116 kb on + strand at 3122.116 kb on + strand at 3122.117 kb on - strand at 3122.148 kb on + strand at 3122.227 kb on + strand at 3122.228 kb on - strand, within Echvi_2634 at 3122.265 kb on - strand, within Echvi_2634 at 3122.275 kb on + strand, within Echvi_2634 at 3122.276 kb on - strand, within Echvi_2634 at 3122.293 kb on + strand, within Echvi_2634 at 3122.293 kb on + strand, within Echvi_2634 at 3122.398 kb on + strand, within Echvi_2634 at 3122.399 kb on - strand, within Echvi_2634 at 3122.400 kb on + strand, within Echvi_2634 at 3122.400 kb on + strand, within Echvi_2634 at 3122.643 kb on + strand, within Echvi_2634 at 3122.643 kb on + strand, within Echvi_2634 at 3122.643 kb on + strand, within Echvi_2634 at 3122.656 kb on + strand, within Echvi_2634 at 3122.656 kb on + strand, within Echvi_2634 at 3122.657 kb on - strand, within Echvi_2634 at 3122.661 kb on + strand, within Echvi_2634 at 3122.664 kb on + strand, within Echvi_2634 at 3122.722 kb on + strand, within Echvi_2634 at 3122.860 kb on + strand, within Echvi_2634 at 3122.900 kb on + strand at 3122.900 kb on + strand at 3122.926 kb on + strand at 3122.929 kb on + strand at 3122.969 kb on + strand at 3122.981 kb on - strand at 3123.209 kb on - strand, within Echvi_2635 at 3123.209 kb on - strand, within Echvi_2635 at 3123.215 kb on + strand, within Echvi_2635 at 3123.215 kb on + strand, within Echvi_2635 at 3123.215 kb on + strand, within Echvi_2635 at 3123.216 kb on - strand, within Echvi_2635 at 3123.216 kb on - strand, within Echvi_2635 at 3123.216 kb on - strand, within Echvi_2635 at 3123.217 kb on + strand, within Echvi_2635 at 3123.217 kb on + strand, within Echvi_2635 at 3123.217 kb on + strand, within Echvi_2635 at 3123.218 kb on - strand, within Echvi_2635 at 3123.218 kb on - strand, within Echvi_2635 at 3123.257 kb on + strand, within Echvi_2635 at 3123.257 kb on + strand, within Echvi_2635 at 3123.293 kb on + strand, within Echvi_2635 at 3123.297 kb on - strand, within Echvi_2635 at 3123.353 kb on + strand, within Echvi_2635 at 3123.354 kb on - strand, within Echvi_2635 at 3123.376 kb on - strand, within Echvi_2635 at 3123.422 kb on + strand, within Echvi_2635 at 3123.422 kb on + strand, within Echvi_2635 at 3123.423 kb on - strand, within Echvi_2635 at 3123.423 kb on - strand, within Echvi_2635 at 3123.423 kb on - strand, within Echvi_2635 at 3123.437 kb on + strand, within Echvi_2635 at 3123.437 kb on + strand, within Echvi_2635 at 3123.438 kb on - strand, within Echvi_2635 at 3123.444 kb on + strand, within Echvi_2635 at 3123.444 kb on + strand, within Echvi_2635 at 3123.445 kb on - strand, within Echvi_2635 at 3123.529 kb on + strand, within Echvi_2635 at 3123.654 kb on - strand, within Echvi_2635 at 3123.654 kb on - strand, within Echvi_2635 at 3123.730 kb on - strand at 3123.780 kb on + strand at 3123.797 kb on + strand at 3123.867 kb on + strand at 3123.874 kb on + strand at 3123.899 kb on - strand at 3123.939 kb on - strand at 3123.940 kb on + strand at 3123.940 kb on + strand at 3123.940 kb on + strand at 3123.944 kb on + strand at 3123.972 kb on - strand at 3123.985 kb on - strand at 3124.041 kb on + strand at 3124.041 kb on + strand at 3124.041 kb on + strand at 3124.042 kb on - strand at 3124.042 kb on - strand at 3124.042 kb on - strand at 3124.042 kb on - strand at 3124.079 kb on + strand at 3124.079 kb on + strand at 3124.079 kb on + strand at 3124.121 kb on + strand at 3124.122 kb on - strand at 3124.124 kb on - strand at 3124.124 kb on - strand at 3124.129 kb on + strand at 3124.182 kb on - strand at 3124.217 kb on + strand at 3124.228 kb on + strand at 3124.228 kb on + strand at 3124.229 kb on - strand at 3124.263 kb on - strand at 3124.269 kb on + strand at 3124.270 kb on - strand at 3124.270 kb on - strand at 3124.316 kb on - strand at 3124.331 kb on + strand at 3124.351 kb on + strand at 3124.394 kb on - strand at 3124.394 kb on - strand at 3124.394 kb on - strand at 3124.394 kb on - strand at 3124.394 kb on - strand at 3124.396 kb on + strand at 3124.530 kb on + strand, within Echvi_2636 at 3124.573 kb on + strand, within Echvi_2636 at 3124.573 kb on + strand, within Echvi_2636 at 3124.573 kb on + strand, within Echvi_2636 at 3124.574 kb on - strand, within Echvi_2636 at 3124.577 kb on + strand, within Echvi_2636 at 3124.577 kb on + strand, within Echvi_2636 at 3124.577 kb on + strand, within Echvi_2636 at 3124.577 kb on + strand, within Echvi_2636 at 3124.578 kb on - strand, within Echvi_2636 at 3124.578 kb on - strand, within Echvi_2636 at 3124.578 kb on - strand, within Echvi_2636 at 3124.589 kb on + strand, within Echvi_2636 at 3124.590 kb on - strand, within Echvi_2636 at 3124.590 kb on - strand, within Echvi_2636 at 3124.596 kb on + strand, within Echvi_2636 at 3124.597 kb on - strand, within Echvi_2636 at 3124.652 kb on + strand, within Echvi_2636 at 3124.655 kb on - strand, within Echvi_2636 at 3124.694 kb on + strand, within Echvi_2636 at 3124.695 kb on - strand, within Echvi_2636 at 3124.722 kb on + strand, within Echvi_2636 at 3124.722 kb on + strand, within Echvi_2636 at 3124.722 kb on + strand, within Echvi_2636 at 3124.722 kb on + strand, within Echvi_2636 at 3124.722 kb on + strand, within Echvi_2636 at 3124.723 kb on - strand, within Echvi_2636 at 3124.723 kb on - strand, within Echvi_2636 at 3124.723 kb on - strand, within Echvi_2636 at 3124.723 kb on - strand, within Echvi_2636 at 3124.723 kb on - strand, within Echvi_2636 at 3124.723 kb on - strand, within Echvi_2636
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,121,935 - Echvi_2633 0.89 -1.1 3,122,063 - -1.0 3,122,063 - -2.4 3,122,116 + +1.0 3,122,116 + -0.1 3,122,117 - +1.2 3,122,148 + +0.2 3,122,227 + -0.7 3,122,228 - Echvi_2634 0.10 +0.6 3,122,265 - Echvi_2634 0.15 -0.2 3,122,275 + Echvi_2634 0.16 -1.3 3,122,276 - Echvi_2634 0.16 +1.7 3,122,293 + Echvi_2634 0.18 -2.7 3,122,293 + Echvi_2634 0.18 -0.7 3,122,398 + Echvi_2634 0.31 -0.2 3,122,399 - Echvi_2634 0.31 +1.1 3,122,400 + Echvi_2634 0.31 -0.5 3,122,400 + Echvi_2634 0.31 -1.2 3,122,643 + Echvi_2634 0.61 -3.4 3,122,643 + Echvi_2634 0.61 -0.9 3,122,643 + Echvi_2634 0.61 -1.3 3,122,656 + Echvi_2634 0.63 -0.9 3,122,656 + Echvi_2634 0.63 -1.2 3,122,657 - Echvi_2634 0.63 -1.9 3,122,661 + Echvi_2634 0.64 -2.1 3,122,664 + Echvi_2634 0.64 -2.8 3,122,722 + Echvi_2634 0.71 -3.2 3,122,860 + Echvi_2634 0.88 -2.5 3,122,900 + -0.4 3,122,900 + -2.3 3,122,926 + -0.8 3,122,929 + -1.5 3,122,969 + -1.2 3,122,981 - +0.7 3,123,209 - Echvi_2635 0.34 -0.4 3,123,209 - Echvi_2635 0.34 -2.5 3,123,215 + Echvi_2635 0.35 -2.3 3,123,215 + Echvi_2635 0.35 -0.4 3,123,215 + Echvi_2635 0.35 -0.5 3,123,216 - Echvi_2635 0.35 +1.0 3,123,216 - Echvi_2635 0.35 -0.5 3,123,216 - Echvi_2635 0.35 -2.5 3,123,217 + Echvi_2635 0.35 -0.6 3,123,217 + Echvi_2635 0.35 -2.4 3,123,217 + Echvi_2635 0.35 -1.8 3,123,218 - Echvi_2635 0.36 +0.6 3,123,218 - Echvi_2635 0.36 -1.0 3,123,257 + Echvi_2635 0.40 +0.0 3,123,257 + Echvi_2635 0.40 -3.2 3,123,293 + Echvi_2635 0.45 -0.6 3,123,297 - Echvi_2635 0.45 -0.8 3,123,353 + Echvi_2635 0.52 -1.7 3,123,354 - Echvi_2635 0.52 -1.3 3,123,376 - Echvi_2635 0.55 -1.4 3,123,422 + Echvi_2635 0.61 -1.8 3,123,422 + Echvi_2635 0.61 -1.3 3,123,423 - Echvi_2635 0.61 +0.6 3,123,423 - Echvi_2635 0.61 -0.5 3,123,423 - Echvi_2635 0.61 -0.1 3,123,437 + Echvi_2635 0.62 -1.8 3,123,437 + Echvi_2635 0.62 +0.5 3,123,438 - Echvi_2635 0.62 -0.3 3,123,444 + Echvi_2635 0.63 -1.1 3,123,444 + Echvi_2635 0.63 -2.2 3,123,445 - Echvi_2635 0.63 -1.2 3,123,529 + Echvi_2635 0.74 -1.3 3,123,654 - Echvi_2635 0.89 +0.3 3,123,654 - Echvi_2635 0.89 +1.6 3,123,730 - -0.5 3,123,780 + -1.7 3,123,797 + +0.9 3,123,867 + -3.0 3,123,874 + +0.2 3,123,899 - +0.1 3,123,939 - +0.6 3,123,940 + -0.3 3,123,940 + -2.0 3,123,940 + +0.5 3,123,944 + -0.0 3,123,972 - +0.3 3,123,985 - -1.1 3,124,041 + -1.1 3,124,041 + -1.6 3,124,041 + -1.4 3,124,042 - +0.6 3,124,042 - -0.6 3,124,042 - -0.9 3,124,042 - -0.4 3,124,079 + -1.7 3,124,079 + -0.4 3,124,079 + +0.7 3,124,121 + +0.3 3,124,122 - +0.5 3,124,124 - -1.9 3,124,124 - -0.4 3,124,129 + +0.0 3,124,182 - +0.3 3,124,217 + +1.9 3,124,228 + +0.4 3,124,228 + -0.1 3,124,229 - +1.0 3,124,263 - -1.9 3,124,269 + -0.4 3,124,270 - +0.5 3,124,270 - +1.7 3,124,316 - -0.0 3,124,331 + -1.5 3,124,351 + +0.8 3,124,394 - -0.5 3,124,394 - +0.8 3,124,394 - -2.0 3,124,394 - +0.0 3,124,394 - +0.4 3,124,396 + -1.0 3,124,530 + Echvi_2636 0.17 -1.1 3,124,573 + Echvi_2636 0.22 +1.1 3,124,573 + Echvi_2636 0.22 +1.0 3,124,573 + Echvi_2636 0.22 -1.1 3,124,574 - Echvi_2636 0.22 -0.4 3,124,577 + Echvi_2636 0.23 +0.4 3,124,577 + Echvi_2636 0.23 +0.7 3,124,577 + Echvi_2636 0.23 -0.2 3,124,577 + Echvi_2636 0.23 -0.3 3,124,578 - Echvi_2636 0.23 +0.5 3,124,578 - Echvi_2636 0.23 +1.4 3,124,578 - Echvi_2636 0.23 +1.3 3,124,589 + Echvi_2636 0.24 -0.6 3,124,590 - Echvi_2636 0.24 +0.2 3,124,590 - Echvi_2636 0.24 +2.5 3,124,596 + Echvi_2636 0.25 -3.2 3,124,597 - Echvi_2636 0.25 -0.7 3,124,652 + Echvi_2636 0.32 -0.1 3,124,655 - Echvi_2636 0.32 +4.0 3,124,694 + Echvi_2636 0.37 -0.1 3,124,695 - Echvi_2636 0.37 -2.2 3,124,722 + Echvi_2636 0.41 -0.1 3,124,722 + Echvi_2636 0.41 -0.4 3,124,722 + Echvi_2636 0.41 +0.5 3,124,722 + Echvi_2636 0.41 +0.0 3,124,722 + Echvi_2636 0.41 +0.5 3,124,723 - Echvi_2636 0.41 -0.1 3,124,723 - Echvi_2636 0.41 +0.5 3,124,723 - Echvi_2636 0.41 -0.1 3,124,723 - Echvi_2636 0.41 -2.0 3,124,723 - Echvi_2636 0.41 -1.0 3,124,723 - Echvi_2636 0.41 +0.1
Or see this region's nucleotide sequence