Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2312

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2311 and Echvi_2312 are separated by 32 nucleotidesEchvi_2312 and Echvi_2313 are separated by 90 nucleotidesEchvi_2313 and Echvi_2314 are separated by 7 nucleotides Echvi_2311: Echvi_2311 - Prolipoprotein diacylglyceryltransferase, at 2,745,199 to 2,746,302 _2311 Echvi_2312: Echvi_2312 - NAD+ synthetase, at 2,746,335 to 2,748,188 _2312 Echvi_2313: Echvi_2313 - ribonuclease III, bacterial, at 2,748,279 to 2,749,022 _2313 Echvi_2314: Echvi_2314 - beta-ketoacyl-acyl-carrier-protein synthase II, at 2,749,030 to 2,750,283 _2314 Position (kb) 2746 2747 2748 2749Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2746.327 kb on + strandat 2746.333 kb on + strandat 2746.334 kb on - strandat 2746.336 kb on + strandat 2746.337 kb on - strandat 2748.191 kb on - strandat 2748.191 kb on - strandat 2748.191 kb on - strandat 2748.191 kb on - strandat 2748.255 kb on - strandat 2748.255 kb on - strandat 2748.255 kb on - strandat 2748.260 kb on - strandat 2748.260 kb on - strandat 2748.260 kb on - strandat 2748.260 kb on - strandat 2748.271 kb on - strandat 2748.271 kb on - strandat 2748.273 kb on - strandat 2748.280 kb on + strandat 2748.280 kb on + strandat 2748.281 kb on - strandat 2748.281 kb on - strandat 2748.281 kb on - strandat 2748.281 kb on - strandat 2748.344 kb on + strandat 2748.345 kb on - strandat 2748.396 kb on - strand, within Echvi_2313at 2748.444 kb on + strand, within Echvi_2313at 2748.444 kb on + strand, within Echvi_2313at 2748.445 kb on - strand, within Echvi_2313at 2748.482 kb on + strand, within Echvi_2313at 2748.483 kb on - strand, within Echvi_2313at 2748.512 kb on + strand, within Echvi_2313at 2748.512 kb on + strand, within Echvi_2313at 2748.513 kb on - strand, within Echvi_2313at 2748.513 kb on - strand, within Echvi_2313at 2748.516 kb on - strand, within Echvi_2313at 2748.529 kb on + strand, within Echvi_2313at 2748.573 kb on - strand, within Echvi_2313at 2748.574 kb on + strand, within Echvi_2313at 2748.589 kb on + strand, within Echvi_2313at 2748.590 kb on - strand, within Echvi_2313at 2748.590 kb on - strand, within Echvi_2313at 2748.590 kb on - strand, within Echvi_2313at 2748.590 kb on - strand, within Echvi_2313at 2748.612 kb on + strand, within Echvi_2313at 2748.613 kb on - strand, within Echvi_2313at 2748.625 kb on + strand, within Echvi_2313at 2748.626 kb on - strand, within Echvi_2313at 2748.644 kb on - strand, within Echvi_2313at 2748.644 kb on - strand, within Echvi_2313at 2748.645 kb on + strand, within Echvi_2313at 2748.645 kb on + strand, within Echvi_2313at 2748.646 kb on - strand, within Echvi_2313at 2748.646 kb on - strand, within Echvi_2313at 2748.845 kb on + strand, within Echvi_2313at 2748.905 kb on + strand, within Echvi_2313at 2748.908 kb on - strand, within Echvi_2313at 2748.908 kb on - strand, within Echvi_2313at 2748.908 kb on - strand, within Echvi_2313at 2748.909 kb on + strand, within Echvi_2313at 2748.909 kb on + strand, within Echvi_2313at 2748.910 kb on - strand, within Echvi_2313at 2748.942 kb on + strand, within Echvi_2313at 2748.942 kb on + strand, within Echvi_2313at 2748.982 kb on + strandat 2748.983 kb on - strandat 2748.983 kb on - strandat 2748.987 kb on + strandat 2748.987 kb on + strandat 2748.987 kb on + strandat 2748.988 kb on - strandat 2749.099 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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2,746,327 + +0.3
2,746,333 + +1.4
2,746,334 - -2.8
2,746,336 + -0.4
2,746,337 - -2.1
2,748,191 - +1.0
2,748,191 - +0.8
2,748,191 - +0.5
2,748,191 - +2.1
2,748,255 - +0.5
2,748,255 - +0.4
2,748,255 - +0.5
2,748,260 - +0.7
2,748,260 - -0.8
2,748,260 - -0.4
2,748,260 - +1.2
2,748,271 - +0.6
2,748,271 - +0.8
2,748,273 - +0.3
2,748,280 + -3.3
2,748,280 + -1.6
2,748,281 - -1.8
2,748,281 - -0.2
2,748,281 - +1.0
2,748,281 - -1.1
2,748,344 + -0.5
2,748,345 - -3.6
2,748,396 - Echvi_2313 0.16 -2.0
2,748,444 + Echvi_2313 0.22 -2.0
2,748,444 + Echvi_2313 0.22 -1.3
2,748,445 - Echvi_2313 0.22 -2.2
2,748,482 + Echvi_2313 0.27 -2.6
2,748,483 - Echvi_2313 0.27 -0.6
2,748,512 + Echvi_2313 0.31 -0.7
2,748,512 + Echvi_2313 0.31 -3.9
2,748,513 - Echvi_2313 0.31 -0.3
2,748,513 - Echvi_2313 0.31 -1.9
2,748,516 - Echvi_2313 0.32 -1.4
2,748,529 + Echvi_2313 0.34 +1.0
2,748,573 - Echvi_2313 0.40 -1.7
2,748,574 + Echvi_2313 0.40 -3.1
2,748,589 + Echvi_2313 0.42 -3.0
2,748,590 - Echvi_2313 0.42 -0.1
2,748,590 - Echvi_2313 0.42 -0.6
2,748,590 - Echvi_2313 0.42 -0.3
2,748,590 - Echvi_2313 0.42 +0.0
2,748,612 + Echvi_2313 0.45 -3.4
2,748,613 - Echvi_2313 0.45 -3.2
2,748,625 + Echvi_2313 0.47 -2.1
2,748,626 - Echvi_2313 0.47 +0.4
2,748,644 - Echvi_2313 0.49 -2.0
2,748,644 - Echvi_2313 0.49 -0.9
2,748,645 + Echvi_2313 0.49 -1.7
2,748,645 + Echvi_2313 0.49 -1.5
2,748,646 - Echvi_2313 0.49 -3.0
2,748,646 - Echvi_2313 0.49 -1.9
2,748,845 + Echvi_2313 0.76 -2.3
2,748,905 + Echvi_2313 0.84 -2.2
2,748,908 - Echvi_2313 0.85 -1.3
2,748,908 - Echvi_2313 0.85 -1.2
2,748,908 - Echvi_2313 0.85 -1.1
2,748,909 + Echvi_2313 0.85 -1.4
2,748,909 + Echvi_2313 0.85 -2.6
2,748,910 - Echvi_2313 0.85 -1.8
2,748,942 + Echvi_2313 0.89 -0.1
2,748,942 + Echvi_2313 0.89 -0.0
2,748,982 + +0.7
2,748,983 - -2.7
2,748,983 - -0.9
2,748,987 + -0.7
2,748,987 + -0.7
2,748,987 + -0.8
2,748,988 - -2.8
2,749,099 + -0.2

Or see this region's nucleotide sequence