Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2311 and Echvi_2312 are separated by 32 nucleotides Echvi_2312 and Echvi_2313 are separated by 90 nucleotides Echvi_2313 and Echvi_2314 are separated by 7 nucleotides
Echvi_2311: Echvi_2311 - Prolipoprotein diacylglyceryltransferase, at 2,745,199 to 2,746,302
_2311
Echvi_2312: Echvi_2312 - NAD+ synthetase, at 2,746,335 to 2,748,188
_2312
Echvi_2313: Echvi_2313 - ribonuclease III, bacterial, at 2,748,279 to 2,749,022
_2313
Echvi_2314: Echvi_2314 - beta-ketoacyl-acyl-carrier-protein synthase II, at 2,749,030 to 2,750,283
_2314
Position (kb)
2746
2747
2748
2749 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2746.327 kb on + strand at 2746.333 kb on + strand at 2746.334 kb on - strand at 2746.336 kb on + strand at 2746.337 kb on - strand at 2748.191 kb on - strand at 2748.191 kb on - strand at 2748.191 kb on - strand at 2748.191 kb on - strand at 2748.255 kb on - strand at 2748.255 kb on - strand at 2748.255 kb on - strand at 2748.260 kb on - strand at 2748.260 kb on - strand at 2748.260 kb on - strand at 2748.260 kb on - strand at 2748.271 kb on - strand at 2748.271 kb on - strand at 2748.273 kb on - strand at 2748.280 kb on + strand at 2748.280 kb on + strand at 2748.281 kb on - strand at 2748.281 kb on - strand at 2748.281 kb on - strand at 2748.281 kb on - strand at 2748.344 kb on + strand at 2748.345 kb on - strand at 2748.396 kb on - strand, within Echvi_2313 at 2748.444 kb on + strand, within Echvi_2313 at 2748.444 kb on + strand, within Echvi_2313 at 2748.445 kb on - strand, within Echvi_2313 at 2748.482 kb on + strand, within Echvi_2313 at 2748.483 kb on - strand, within Echvi_2313 at 2748.512 kb on + strand, within Echvi_2313 at 2748.512 kb on + strand, within Echvi_2313 at 2748.513 kb on - strand, within Echvi_2313 at 2748.513 kb on - strand, within Echvi_2313 at 2748.516 kb on - strand, within Echvi_2313 at 2748.529 kb on + strand, within Echvi_2313 at 2748.573 kb on - strand, within Echvi_2313 at 2748.574 kb on + strand, within Echvi_2313 at 2748.589 kb on + strand, within Echvi_2313 at 2748.590 kb on - strand, within Echvi_2313 at 2748.590 kb on - strand, within Echvi_2313 at 2748.590 kb on - strand, within Echvi_2313 at 2748.590 kb on - strand, within Echvi_2313 at 2748.612 kb on + strand, within Echvi_2313 at 2748.613 kb on - strand, within Echvi_2313 at 2748.625 kb on + strand, within Echvi_2313 at 2748.626 kb on - strand, within Echvi_2313 at 2748.644 kb on - strand, within Echvi_2313 at 2748.644 kb on - strand, within Echvi_2313 at 2748.645 kb on + strand, within Echvi_2313 at 2748.645 kb on + strand, within Echvi_2313 at 2748.646 kb on - strand, within Echvi_2313 at 2748.646 kb on - strand, within Echvi_2313 at 2748.845 kb on + strand, within Echvi_2313 at 2748.905 kb on + strand, within Echvi_2313 at 2748.908 kb on - strand, within Echvi_2313 at 2748.908 kb on - strand, within Echvi_2313 at 2748.908 kb on - strand, within Echvi_2313 at 2748.909 kb on + strand, within Echvi_2313 at 2748.909 kb on + strand, within Echvi_2313 at 2748.910 kb on - strand, within Echvi_2313 at 2748.942 kb on + strand, within Echvi_2313 at 2748.942 kb on + strand, within Echvi_2313 at 2748.982 kb on + strand at 2748.983 kb on - strand at 2748.983 kb on - strand at 2748.987 kb on + strand at 2748.987 kb on + strand at 2748.987 kb on + strand at 2748.988 kb on - strand at 2749.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,746,327 + +0.3 2,746,333 + +1.4 2,746,334 - -2.8 2,746,336 + -0.4 2,746,337 - -2.1 2,748,191 - +1.0 2,748,191 - +0.8 2,748,191 - +0.5 2,748,191 - +2.1 2,748,255 - +0.5 2,748,255 - +0.4 2,748,255 - +0.5 2,748,260 - +0.7 2,748,260 - -0.8 2,748,260 - -0.4 2,748,260 - +1.2 2,748,271 - +0.6 2,748,271 - +0.8 2,748,273 - +0.3 2,748,280 + -3.3 2,748,280 + -1.6 2,748,281 - -1.8 2,748,281 - -0.2 2,748,281 - +1.0 2,748,281 - -1.1 2,748,344 + -0.5 2,748,345 - -3.6 2,748,396 - Echvi_2313 0.16 -2.0 2,748,444 + Echvi_2313 0.22 -2.0 2,748,444 + Echvi_2313 0.22 -1.3 2,748,445 - Echvi_2313 0.22 -2.2 2,748,482 + Echvi_2313 0.27 -2.6 2,748,483 - Echvi_2313 0.27 -0.6 2,748,512 + Echvi_2313 0.31 -0.7 2,748,512 + Echvi_2313 0.31 -3.9 2,748,513 - Echvi_2313 0.31 -0.3 2,748,513 - Echvi_2313 0.31 -1.9 2,748,516 - Echvi_2313 0.32 -1.4 2,748,529 + Echvi_2313 0.34 +1.0 2,748,573 - Echvi_2313 0.40 -1.7 2,748,574 + Echvi_2313 0.40 -3.1 2,748,589 + Echvi_2313 0.42 -3.0 2,748,590 - Echvi_2313 0.42 -0.1 2,748,590 - Echvi_2313 0.42 -0.6 2,748,590 - Echvi_2313 0.42 -0.3 2,748,590 - Echvi_2313 0.42 +0.0 2,748,612 + Echvi_2313 0.45 -3.4 2,748,613 - Echvi_2313 0.45 -3.2 2,748,625 + Echvi_2313 0.47 -2.1 2,748,626 - Echvi_2313 0.47 +0.4 2,748,644 - Echvi_2313 0.49 -2.0 2,748,644 - Echvi_2313 0.49 -0.9 2,748,645 + Echvi_2313 0.49 -1.7 2,748,645 + Echvi_2313 0.49 -1.5 2,748,646 - Echvi_2313 0.49 -3.0 2,748,646 - Echvi_2313 0.49 -1.9 2,748,845 + Echvi_2313 0.76 -2.3 2,748,905 + Echvi_2313 0.84 -2.2 2,748,908 - Echvi_2313 0.85 -1.3 2,748,908 - Echvi_2313 0.85 -1.2 2,748,908 - Echvi_2313 0.85 -1.1 2,748,909 + Echvi_2313 0.85 -1.4 2,748,909 + Echvi_2313 0.85 -2.6 2,748,910 - Echvi_2313 0.85 -1.8 2,748,942 + Echvi_2313 0.89 -0.1 2,748,942 + Echvi_2313 0.89 -0.0 2,748,982 + +0.7 2,748,983 - -2.7 2,748,983 - -0.9 2,748,987 + -0.7 2,748,987 + -0.7 2,748,987 + -0.8 2,748,988 - -2.8 2,749,099 + -0.2
Or see this region's nucleotide sequence