Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2309 and Echvi_2310 are separated by 52 nucleotides Echvi_2310 and Echvi_2311 overlap by 4 nucleotides
Echvi_2309: Echvi_2309 - Outer membrane protein/protective antigen OMA87, at 2,743,444 to 2,744,928
_2309
Echvi_2310: Echvi_2310 - conserved hypothetical protein YidD, at 2,744,981 to 2,745,202
_2310
Echvi_2311: Echvi_2311 - Prolipoprotein diacylglyceryltransferase, at 2,745,199 to 2,746,302
_2311
Position (kb)
2744
2745
2746 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2744.007 kb on - strand, within Echvi_2309 at 2744.007 kb on - strand, within Echvi_2309 at 2744.011 kb on + strand, within Echvi_2309 at 2744.011 kb on + strand, within Echvi_2309 at 2744.011 kb on + strand, within Echvi_2309 at 2744.012 kb on - strand, within Echvi_2309 at 2744.012 kb on - strand, within Echvi_2309 at 2744.012 kb on - strand, within Echvi_2309 at 2744.012 kb on - strand, within Echvi_2309 at 2744.012 kb on - strand, within Echvi_2309 at 2744.012 kb on - strand, within Echvi_2309 at 2744.039 kb on + strand, within Echvi_2309 at 2744.058 kb on - strand, within Echvi_2309 at 2744.107 kb on + strand, within Echvi_2309 at 2744.108 kb on - strand, within Echvi_2309 at 2744.108 kb on - strand, within Echvi_2309 at 2744.151 kb on - strand, within Echvi_2309 at 2744.162 kb on + strand, within Echvi_2309 at 2744.184 kb on - strand, within Echvi_2309 at 2744.232 kb on + strand, within Echvi_2309 at 2744.237 kb on + strand, within Echvi_2309 at 2744.237 kb on + strand, within Echvi_2309 at 2744.242 kb on + strand, within Echvi_2309 at 2744.253 kb on + strand, within Echvi_2309 at 2744.254 kb on - strand, within Echvi_2309 at 2744.256 kb on - strand, within Echvi_2309 at 2744.286 kb on + strand, within Echvi_2309 at 2744.289 kb on + strand, within Echvi_2309 at 2744.289 kb on + strand, within Echvi_2309 at 2744.335 kb on - strand, within Echvi_2309 at 2744.335 kb on - strand, within Echvi_2309 at 2744.335 kb on - strand, within Echvi_2309 at 2744.336 kb on + strand, within Echvi_2309 at 2744.336 kb on + strand, within Echvi_2309 at 2744.336 kb on + strand, within Echvi_2309 at 2744.348 kb on + strand, within Echvi_2309 at 2744.349 kb on - strand, within Echvi_2309 at 2744.349 kb on - strand, within Echvi_2309 at 2744.425 kb on - strand, within Echvi_2309 at 2744.444 kb on + strand, within Echvi_2309 at 2744.530 kb on + strand, within Echvi_2309 at 2744.530 kb on + strand, within Echvi_2309 at 2744.531 kb on - strand, within Echvi_2309 at 2744.531 kb on - strand, within Echvi_2309 at 2744.534 kb on + strand, within Echvi_2309 at 2744.534 kb on + strand, within Echvi_2309 at 2744.535 kb on - strand, within Echvi_2309 at 2744.566 kb on + strand, within Echvi_2309 at 2744.811 kb on + strand at 2744.811 kb on + strand at 2744.812 kb on - strand at 2744.812 kb on - strand at 2744.812 kb on - strand at 2744.870 kb on - strand at 2744.870 kb on - strand at 2744.872 kb on + strand at 2744.873 kb on - strand at 2744.876 kb on - strand at 2744.895 kb on - strand at 2744.989 kb on + strand at 2745.026 kb on + strand, within Echvi_2310 at 2745.032 kb on + strand, within Echvi_2310 at 2745.064 kb on + strand, within Echvi_2310 at 2745.064 kb on + strand, within Echvi_2310 at 2745.065 kb on - strand, within Echvi_2310 at 2745.065 kb on - strand, within Echvi_2310 at 2745.068 kb on + strand, within Echvi_2310 at 2745.069 kb on - strand, within Echvi_2310 at 2745.090 kb on - strand, within Echvi_2310
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,744,007 - Echvi_2309 0.38 +0.8 2,744,007 - Echvi_2309 0.38 -2.6 2,744,011 + Echvi_2309 0.38 +0.1 2,744,011 + Echvi_2309 0.38 -1.9 2,744,011 + Echvi_2309 0.38 +0.1 2,744,012 - Echvi_2309 0.38 +1.2 2,744,012 - Echvi_2309 0.38 +0.4 2,744,012 - Echvi_2309 0.38 +0.8 2,744,012 - Echvi_2309 0.38 -0.9 2,744,012 - Echvi_2309 0.38 -0.2 2,744,012 - Echvi_2309 0.38 -1.5 2,744,039 + Echvi_2309 0.40 -0.5 2,744,058 - Echvi_2309 0.41 -2.3 2,744,107 + Echvi_2309 0.45 -0.1 2,744,108 - Echvi_2309 0.45 +3.1 2,744,108 - Echvi_2309 0.45 +1.5 2,744,151 - Echvi_2309 0.48 -1.8 2,744,162 + Echvi_2309 0.48 +1.5 2,744,184 - Echvi_2309 0.50 +0.4 2,744,232 + Echvi_2309 0.53 -0.4 2,744,237 + Echvi_2309 0.53 -0.9 2,744,237 + Echvi_2309 0.53 -0.4 2,744,242 + Echvi_2309 0.54 +1.6 2,744,253 + Echvi_2309 0.54 +2.1 2,744,254 - Echvi_2309 0.55 -0.4 2,744,256 - Echvi_2309 0.55 -1.2 2,744,286 + Echvi_2309 0.57 +1.2 2,744,289 + Echvi_2309 0.57 -0.7 2,744,289 + Echvi_2309 0.57 +1.2 2,744,335 - Echvi_2309 0.60 +0.8 2,744,335 - Echvi_2309 0.60 -1.6 2,744,335 - Echvi_2309 0.60 +1.4 2,744,336 + Echvi_2309 0.60 +1.1 2,744,336 + Echvi_2309 0.60 +1.6 2,744,336 + Echvi_2309 0.60 +0.1 2,744,348 + Echvi_2309 0.61 -0.9 2,744,349 - Echvi_2309 0.61 +0.5 2,744,349 - Echvi_2309 0.61 +1.1 2,744,425 - Echvi_2309 0.66 -0.4 2,744,444 + Echvi_2309 0.67 +0.3 2,744,530 + Echvi_2309 0.73 +0.7 2,744,530 + Echvi_2309 0.73 -1.9 2,744,531 - Echvi_2309 0.73 -1.8 2,744,531 - Echvi_2309 0.73 +2.5 2,744,534 + Echvi_2309 0.73 -0.5 2,744,534 + Echvi_2309 0.73 +1.6 2,744,535 - Echvi_2309 0.73 -0.5 2,744,566 + Echvi_2309 0.76 -0.1 2,744,811 + -1.0 2,744,811 + +2.3 2,744,812 - +0.8 2,744,812 - +0.1 2,744,812 - +1.1 2,744,870 - -2.9 2,744,870 - +0.1 2,744,872 + -2.0 2,744,873 - -0.9 2,744,876 - -0.4 2,744,895 - +1.3 2,744,989 + +0.9 2,745,026 + Echvi_2310 0.20 -0.7 2,745,032 + Echvi_2310 0.23 -0.2 2,745,064 + Echvi_2310 0.37 -0.2 2,745,064 + Echvi_2310 0.37 -1.3 2,745,065 - Echvi_2310 0.38 -3.2 2,745,065 - Echvi_2310 0.38 +0.0 2,745,068 + Echvi_2310 0.39 +0.1 2,745,069 - Echvi_2310 0.40 -1.6 2,745,090 - Echvi_2310 0.49 -1.0
Or see this region's nucleotide sequence