Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2303 and Echvi_2304 are separated by 9 nucleotides Echvi_2304 and Echvi_2305 are separated by 180 nucleotides Echvi_2305 and Echvi_2306 are separated by 189 nucleotides Echvi_2306 and Echvi_2307 are separated by 83 nucleotides
Echvi_2303: Echvi_2303 - hypothetical protein, at 2,735,323 to 2,736,792
_2303
Echvi_2304: Echvi_2304 - ABC-type multidrug transport system, ATPase component, at 2,736,802 to 2,737,521
_2304
Echvi_2305: Echvi_2305 - Protease II, at 2,737,702 to 2,739,774
_2305
Echvi_2306: Echvi_2306 - large conductance mechanosensitive channel protein, at 2,739,964 to 2,740,380
_2306
Echvi_2307: Echvi_2307 - hypothetical protein, at 2,740,464 to 2,742,542
_2307
Position (kb)
2737
2738
2739
2740 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2736.758 kb on - strand at 2736.802 kb on - strand at 2736.812 kb on + strand at 2736.833 kb on - strand at 2736.906 kb on + strand, within Echvi_2304 at 2736.933 kb on + strand, within Echvi_2304 at 2736.951 kb on + strand, within Echvi_2304 at 2736.974 kb on + strand, within Echvi_2304 at 2736.974 kb on + strand, within Echvi_2304 at 2736.975 kb on - strand, within Echvi_2304 at 2736.977 kb on + strand, within Echvi_2304 at 2736.978 kb on - strand, within Echvi_2304 at 2736.989 kb on + strand, within Echvi_2304 at 2736.990 kb on - strand, within Echvi_2304 at 2736.990 kb on - strand, within Echvi_2304 at 2737.021 kb on + strand, within Echvi_2304 at 2737.022 kb on - strand, within Echvi_2304 at 2737.022 kb on - strand, within Echvi_2304 at 2737.022 kb on - strand, within Echvi_2304 at 2737.023 kb on + strand, within Echvi_2304 at 2737.036 kb on - strand, within Echvi_2304 at 2737.060 kb on + strand, within Echvi_2304 at 2737.084 kb on + strand, within Echvi_2304 at 2737.091 kb on + strand, within Echvi_2304 at 2737.199 kb on + strand, within Echvi_2304 at 2737.259 kb on + strand, within Echvi_2304 at 2737.259 kb on + strand, within Echvi_2304 at 2737.259 kb on + strand, within Echvi_2304 at 2737.260 kb on - strand, within Echvi_2304 at 2737.260 kb on - strand, within Echvi_2304 at 2737.260 kb on - strand, within Echvi_2304 at 2737.290 kb on - strand, within Echvi_2304 at 2737.296 kb on + strand, within Echvi_2304 at 2737.297 kb on - strand, within Echvi_2304 at 2737.333 kb on + strand, within Echvi_2304 at 2737.333 kb on + strand, within Echvi_2304 at 2737.444 kb on - strand, within Echvi_2304 at 2737.446 kb on + strand, within Echvi_2304 at 2737.447 kb on - strand, within Echvi_2304 at 2737.573 kb on - strand at 2737.579 kb on + strand at 2737.604 kb on + strand at 2737.616 kb on - strand at 2737.640 kb on - strand at 2737.667 kb on + strand at 2737.668 kb on - strand at 2737.678 kb on + strand at 2737.679 kb on - strand at 2737.679 kb on - strand at 2737.679 kb on - strand at 2737.679 kb on - strand at 2737.825 kb on - strand at 2737.831 kb on + strand at 2737.832 kb on - strand at 2737.832 kb on - strand at 2737.885 kb on - strand at 2737.926 kb on + strand, within Echvi_2305 at 2737.927 kb on - strand, within Echvi_2305 at 2737.943 kb on + strand, within Echvi_2305 at 2737.976 kb on + strand, within Echvi_2305 at 2737.977 kb on - strand, within Echvi_2305 at 2737.988 kb on + strand, within Echvi_2305 at 2737.988 kb on + strand, within Echvi_2305 at 2737.988 kb on + strand, within Echvi_2305 at 2737.995 kb on - strand, within Echvi_2305 at 2737.995 kb on - strand, within Echvi_2305 at 2738.070 kb on + strand, within Echvi_2305 at 2738.182 kb on + strand, within Echvi_2305 at 2738.183 kb on - strand, within Echvi_2305 at 2738.201 kb on + strand, within Echvi_2305 at 2738.201 kb on + strand, within Echvi_2305 at 2738.202 kb on - strand, within Echvi_2305 at 2738.202 kb on - strand, within Echvi_2305 at 2738.250 kb on + strand, within Echvi_2305 at 2738.251 kb on - strand, within Echvi_2305 at 2738.347 kb on + strand, within Echvi_2305 at 2738.351 kb on - strand, within Echvi_2305 at 2738.386 kb on - strand, within Echvi_2305 at 2738.449 kb on - strand, within Echvi_2305 at 2738.459 kb on + strand, within Echvi_2305 at 2738.460 kb on - strand, within Echvi_2305 at 2738.460 kb on - strand, within Echvi_2305 at 2738.460 kb on - strand, within Echvi_2305 at 2738.472 kb on + strand, within Echvi_2305 at 2738.472 kb on + strand, within Echvi_2305 at 2738.473 kb on - strand, within Echvi_2305 at 2738.584 kb on + strand, within Echvi_2305 at 2738.585 kb on - strand, within Echvi_2305 at 2738.585 kb on - strand, within Echvi_2305 at 2738.589 kb on + strand, within Echvi_2305 at 2738.589 kb on + strand, within Echvi_2305 at 2738.594 kb on + strand, within Echvi_2305 at 2738.594 kb on + strand, within Echvi_2305 at 2738.594 kb on + strand, within Echvi_2305 at 2738.595 kb on - strand, within Echvi_2305 at 2738.595 kb on - strand, within Echvi_2305 at 2738.600 kb on + strand, within Echvi_2305 at 2738.600 kb on + strand, within Echvi_2305 at 2738.600 kb on + strand, within Echvi_2305 at 2738.601 kb on - strand, within Echvi_2305 at 2738.601 kb on - strand, within Echvi_2305 at 2738.601 kb on - strand, within Echvi_2305 at 2738.604 kb on + strand, within Echvi_2305 at 2738.605 kb on - strand, within Echvi_2305 at 2738.605 kb on - strand, within Echvi_2305 at 2738.631 kb on - strand, within Echvi_2305 at 2738.667 kb on + strand, within Echvi_2305 at 2738.667 kb on + strand, within Echvi_2305 at 2738.667 kb on + strand, within Echvi_2305 at 2738.668 kb on - strand, within Echvi_2305 at 2738.669 kb on + strand, within Echvi_2305 at 2738.710 kb on - strand, within Echvi_2305 at 2738.711 kb on + strand, within Echvi_2305 at 2738.711 kb on + strand, within Echvi_2305 at 2738.712 kb on - strand, within Echvi_2305 at 2738.764 kb on - strand, within Echvi_2305 at 2738.957 kb on + strand, within Echvi_2305 at 2738.985 kb on + strand, within Echvi_2305 at 2738.986 kb on - strand, within Echvi_2305 at 2739.060 kb on + strand, within Echvi_2305 at 2739.061 kb on - strand, within Echvi_2305 at 2739.061 kb on - strand, within Echvi_2305 at 2739.066 kb on + strand, within Echvi_2305 at 2739.066 kb on + strand, within Echvi_2305 at 2739.066 kb on + strand, within Echvi_2305 at 2739.067 kb on - strand, within Echvi_2305 at 2739.069 kb on - strand, within Echvi_2305 at 2739.069 kb on - strand, within Echvi_2305 at 2739.170 kb on + strand, within Echvi_2305 at 2739.312 kb on + strand, within Echvi_2305 at 2739.312 kb on + strand, within Echvi_2305 at 2739.313 kb on - strand, within Echvi_2305 at 2739.313 kb on - strand, within Echvi_2305 at 2739.313 kb on - strand, within Echvi_2305 at 2739.315 kb on + strand, within Echvi_2305 at 2739.316 kb on - strand, within Echvi_2305 at 2739.316 kb on - strand, within Echvi_2305 at 2739.317 kb on + strand, within Echvi_2305 at 2739.317 kb on + strand, within Echvi_2305 at 2739.317 kb on + strand, within Echvi_2305 at 2739.369 kb on - strand, within Echvi_2305 at 2739.398 kb on + strand, within Echvi_2305 at 2739.398 kb on + strand, within Echvi_2305 at 2739.398 kb on + strand, within Echvi_2305 at 2739.398 kb on + strand, within Echvi_2305 at 2739.418 kb on + strand, within Echvi_2305 at 2739.455 kb on - strand, within Echvi_2305 at 2739.515 kb on + strand, within Echvi_2305 at 2739.515 kb on + strand, within Echvi_2305 at 2739.515 kb on + strand, within Echvi_2305 at 2739.516 kb on - strand, within Echvi_2305 at 2739.519 kb on - strand, within Echvi_2305 at 2739.519 kb on - strand, within Echvi_2305 at 2739.519 kb on - strand, within Echvi_2305 at 2739.521 kb on + strand, within Echvi_2305 at 2739.628 kb on + strand at 2739.628 kb on + strand at 2739.629 kb on - strand at 2739.692 kb on + strand at 2739.695 kb on + strand at 2739.696 kb on - strand at 2739.711 kb on + strand at 2739.711 kb on + strand at 2739.722 kb on + strand at 2739.723 kb on - strand at 2739.737 kb on - strand at 2739.741 kb on + strand at 2739.766 kb on - strand at 2739.775 kb on - strand at 2739.831 kb on - strand at 2739.956 kb on + strand at 2740.025 kb on + strand, within Echvi_2306 at 2740.097 kb on + strand, within Echvi_2306 at 2740.198 kb on - strand, within Echvi_2306 at 2740.201 kb on + strand, within Echvi_2306 at 2740.201 kb on + strand, within Echvi_2306 at 2740.219 kb on - strand, within Echvi_2306 at 2740.308 kb on + strand, within Echvi_2306 at 2740.308 kb on + strand, within Echvi_2306 at 2740.308 kb on + strand, within Echvi_2306 at 2740.309 kb on - strand, within Echvi_2306 at 2740.309 kb on - strand, within Echvi_2306 at 2740.309 kb on - strand, within Echvi_2306 at 2740.309 kb on - strand, within Echvi_2306 at 2740.356 kb on - strand at 2740.378 kb on + strand at 2740.379 kb on - strand at 2740.387 kb on - strand at 2740.387 kb on - strand at 2740.390 kb on + strand at 2740.413 kb on + strand at 2740.446 kb on + strand at 2740.446 kb on + strand at 2740.593 kb on + strand at 2740.594 kb on - strand at 2740.610 kb on + strand at 2740.637 kb on + strand at 2740.637 kb on + strand at 2740.649 kb on - strand at 2740.649 kb on - strand at 2740.651 kb on + strand at 2740.651 kb on + strand at 2740.651 kb on + strand at 2740.651 kb on + strand at 2740.651 kb on + strand at 2740.652 kb on - strand at 2740.696 kb on + strand, within Echvi_2307 at 2740.697 kb on - strand, within Echvi_2307 at 2740.729 kb on - strand, within Echvi_2307
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,736,758 - -0.9 2,736,802 - -1.0 2,736,812 + +1.0 2,736,833 - -1.9 2,736,906 + Echvi_2304 0.14 -1.3 2,736,933 + Echvi_2304 0.18 -2.7 2,736,951 + Echvi_2304 0.21 +1.4 2,736,974 + Echvi_2304 0.24 -1.3 2,736,974 + Echvi_2304 0.24 +1.9 2,736,975 - Echvi_2304 0.24 -2.3 2,736,977 + Echvi_2304 0.24 +1.9 2,736,978 - Echvi_2304 0.24 -0.2 2,736,989 + Echvi_2304 0.26 -2.0 2,736,990 - Echvi_2304 0.26 -1.4 2,736,990 - Echvi_2304 0.26 +0.3 2,737,021 + Echvi_2304 0.30 -1.8 2,737,022 - Echvi_2304 0.31 +0.1 2,737,022 - Echvi_2304 0.31 -1.2 2,737,022 - Echvi_2304 0.31 -0.2 2,737,023 + Echvi_2304 0.31 +0.1 2,737,036 - Echvi_2304 0.33 +1.0 2,737,060 + Echvi_2304 0.36 -0.2 2,737,084 + Echvi_2304 0.39 -0.2 2,737,091 + Echvi_2304 0.40 +1.1 2,737,199 + Echvi_2304 0.55 +1.2 2,737,259 + Echvi_2304 0.63 -1.5 2,737,259 + Echvi_2304 0.63 -0.4 2,737,259 + Echvi_2304 0.63 -1.6 2,737,260 - Echvi_2304 0.64 -0.1 2,737,260 - Echvi_2304 0.64 +0.1 2,737,260 - Echvi_2304 0.64 +1.5 2,737,290 - Echvi_2304 0.68 +0.4 2,737,296 + Echvi_2304 0.69 -0.6 2,737,297 - Echvi_2304 0.69 +0.1 2,737,333 + Echvi_2304 0.74 -0.7 2,737,333 + Echvi_2304 0.74 +0.5 2,737,444 - Echvi_2304 0.89 -0.8 2,737,446 + Echvi_2304 0.89 +0.8 2,737,447 - Echvi_2304 0.90 -1.0 2,737,573 - +0.7 2,737,579 + +0.9 2,737,604 + -2.0 2,737,616 - +0.6 2,737,640 - -1.0 2,737,667 + -1.0 2,737,668 - +0.2 2,737,678 + +0.9 2,737,679 - -0.7 2,737,679 - -2.5 2,737,679 - +2.1 2,737,679 - +0.4 2,737,825 - -1.6 2,737,831 + -0.9 2,737,832 - -2.8 2,737,832 - +1.5 2,737,885 - -0.7 2,737,926 + Echvi_2305 0.11 +0.3 2,737,927 - Echvi_2305 0.11 -0.9 2,737,943 + Echvi_2305 0.12 -3.1 2,737,976 + Echvi_2305 0.13 -1.9 2,737,977 - Echvi_2305 0.13 -0.7 2,737,988 + Echvi_2305 0.14 +2.5 2,737,988 + Echvi_2305 0.14 +0.2 2,737,988 + Echvi_2305 0.14 +0.8 2,737,995 - Echvi_2305 0.14 -0.6 2,737,995 - Echvi_2305 0.14 -0.1 2,738,070 + Echvi_2305 0.18 -2.6 2,738,182 + Echvi_2305 0.23 +0.9 2,738,183 - Echvi_2305 0.23 -1.2 2,738,201 + Echvi_2305 0.24 +1.0 2,738,201 + Echvi_2305 0.24 -1.1 2,738,202 - Echvi_2305 0.24 -0.4 2,738,202 - Echvi_2305 0.24 +0.2 2,738,250 + Echvi_2305 0.26 -2.7 2,738,251 - Echvi_2305 0.26 +0.3 2,738,347 + Echvi_2305 0.31 +1.7 2,738,351 - Echvi_2305 0.31 +0.1 2,738,386 - Echvi_2305 0.33 -0.3 2,738,449 - Echvi_2305 0.36 -0.5 2,738,459 + Echvi_2305 0.37 -0.1 2,738,460 - Echvi_2305 0.37 -0.7 2,738,460 - Echvi_2305 0.37 -0.5 2,738,460 - Echvi_2305 0.37 -1.6 2,738,472 + Echvi_2305 0.37 -0.2 2,738,472 + Echvi_2305 0.37 +0.9 2,738,473 - Echvi_2305 0.37 -0.9 2,738,584 + Echvi_2305 0.43 -0.6 2,738,585 - Echvi_2305 0.43 -0.5 2,738,585 - Echvi_2305 0.43 -1.7 2,738,589 + Echvi_2305 0.43 -2.1 2,738,589 + Echvi_2305 0.43 +2.9 2,738,594 + Echvi_2305 0.43 -1.0 2,738,594 + Echvi_2305 0.43 -2.2 2,738,594 + Echvi_2305 0.43 -0.2 2,738,595 - Echvi_2305 0.43 +0.1 2,738,595 - Echvi_2305 0.43 +0.4 2,738,600 + Echvi_2305 0.43 -0.2 2,738,600 + Echvi_2305 0.43 +0.5 2,738,600 + Echvi_2305 0.43 -3.0 2,738,601 - Echvi_2305 0.43 -1.0 2,738,601 - Echvi_2305 0.43 -0.7 2,738,601 - Echvi_2305 0.43 +0.1 2,738,604 + Echvi_2305 0.44 +0.7 2,738,605 - Echvi_2305 0.44 +0.2 2,738,605 - Echvi_2305 0.44 +1.8 2,738,631 - Echvi_2305 0.45 -1.7 2,738,667 + Echvi_2305 0.47 -0.3 2,738,667 + Echvi_2305 0.47 -0.8 2,738,667 + Echvi_2305 0.47 -0.5 2,738,668 - Echvi_2305 0.47 -0.1 2,738,669 + Echvi_2305 0.47 -2.2 2,738,710 - Echvi_2305 0.49 -0.5 2,738,711 + Echvi_2305 0.49 -0.5 2,738,711 + Echvi_2305 0.49 -0.1 2,738,712 - Echvi_2305 0.49 -0.3 2,738,764 - Echvi_2305 0.51 +0.5 2,738,957 + Echvi_2305 0.61 +0.1 2,738,985 + Echvi_2305 0.62 +0.1 2,738,986 - Echvi_2305 0.62 -0.1 2,739,060 + Echvi_2305 0.66 +0.3 2,739,061 - Echvi_2305 0.66 +1.1 2,739,061 - Echvi_2305 0.66 +1.1 2,739,066 + Echvi_2305 0.66 -1.4 2,739,066 + Echvi_2305 0.66 +0.4 2,739,066 + Echvi_2305 0.66 -2.1 2,739,067 - Echvi_2305 0.66 +0.8 2,739,069 - Echvi_2305 0.66 +0.2 2,739,069 - Echvi_2305 0.66 -0.7 2,739,170 + Echvi_2305 0.71 -0.4 2,739,312 + Echvi_2305 0.78 +4.9 2,739,312 + Echvi_2305 0.78 +0.1 2,739,313 - Echvi_2305 0.78 -1.3 2,739,313 - Echvi_2305 0.78 +2.6 2,739,313 - Echvi_2305 0.78 +0.7 2,739,315 + Echvi_2305 0.78 -1.4 2,739,316 - Echvi_2305 0.78 -0.3 2,739,316 - Echvi_2305 0.78 -2.4 2,739,317 + Echvi_2305 0.78 -0.7 2,739,317 + Echvi_2305 0.78 -0.3 2,739,317 + Echvi_2305 0.78 +2.9 2,739,369 - Echvi_2305 0.80 -0.7 2,739,398 + Echvi_2305 0.82 -0.5 2,739,398 + Echvi_2305 0.82 -1.3 2,739,398 + Echvi_2305 0.82 -0.2 2,739,398 + Echvi_2305 0.82 -0.5 2,739,418 + Echvi_2305 0.83 -1.2 2,739,455 - Echvi_2305 0.85 +1.3 2,739,515 + Echvi_2305 0.87 +0.1 2,739,515 + Echvi_2305 0.87 +0.6 2,739,515 + Echvi_2305 0.87 +0.1 2,739,516 - Echvi_2305 0.88 -1.5 2,739,519 - Echvi_2305 0.88 +2.5 2,739,519 - Echvi_2305 0.88 -0.5 2,739,519 - Echvi_2305 0.88 -1.6 2,739,521 + Echvi_2305 0.88 +1.0 2,739,628 + -2.4 2,739,628 + +0.5 2,739,629 - -1.2 2,739,692 + -1.0 2,739,695 + -0.7 2,739,696 - +1.5 2,739,711 + -1.5 2,739,711 + -0.2 2,739,722 + +1.3 2,739,723 - -0.4 2,739,737 - -0.7 2,739,741 + +0.5 2,739,766 - +0.1 2,739,775 - +0.4 2,739,831 - -2.3 2,739,956 + -0.0 2,740,025 + Echvi_2306 0.15 -1.7 2,740,097 + Echvi_2306 0.32 -0.1 2,740,198 - Echvi_2306 0.56 +0.6 2,740,201 + Echvi_2306 0.57 +1.5 2,740,201 + Echvi_2306 0.57 +0.5 2,740,219 - Echvi_2306 0.61 +0.6 2,740,308 + Echvi_2306 0.82 -0.8 2,740,308 + Echvi_2306 0.82 +0.9 2,740,308 + Echvi_2306 0.82 -1.0 2,740,309 - Echvi_2306 0.83 +0.8 2,740,309 - Echvi_2306 0.83 +1.3 2,740,309 - Echvi_2306 0.83 +0.6 2,740,309 - Echvi_2306 0.83 +0.9 2,740,356 - +1.8 2,740,378 + -1.6 2,740,379 - +0.6 2,740,387 - -0.4 2,740,387 - +1.7 2,740,390 + +1.1 2,740,413 + -1.8 2,740,446 + +0.1 2,740,446 + -0.6 2,740,593 + -2.1 2,740,594 - +0.1 2,740,610 + +1.0 2,740,637 + -1.0 2,740,637 + +1.6 2,740,649 - -0.3 2,740,649 - -1.2 2,740,651 + -0.5 2,740,651 + +2.3 2,740,651 + -1.2 2,740,651 + +0.1 2,740,651 + -1.9 2,740,652 - +0.7 2,740,696 + Echvi_2307 0.11 -0.0 2,740,697 - Echvi_2307 0.11 -1.5 2,740,729 - Echvi_2307 0.13 -0.1
Or see this region's nucleotide sequence