Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2210 and Echvi_2211 are separated by 129 nucleotides Echvi_2211 and Echvi_2212 are separated by 706 nucleotides Echvi_2212 and Echvi_2213 overlap by 4 nucleotides Echvi_2213 and Echvi_2214 are separated by 79 nucleotides
Echvi_2210: Echvi_2210 - Lipoproteins, at 2,637,755 to 2,638,981
_2210
Echvi_2211: Echvi_2211 - hypothetical protein, at 2,639,111 to 2,639,245
_2211
Echvi_2212: Echvi_2212 - hypothetical protein, at 2,639,952 to 2,640,506
_2212
Echvi_2213: Echvi_2213 - TIGR02757 family protein, at 2,640,503 to 2,641,270
_2213
Echvi_2214: Echvi_2214 - orotate phosphoribosyltransferase, at 2,641,350 to 2,641,997
_2214
Position (kb)
2639
2640
2641 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2638.979 kb on + strand at 2638.980 kb on - strand at 2638.983 kb on - strand at 2639.047 kb on - strand at 2639.059 kb on + strand at 2639.060 kb on - strand at 2639.066 kb on - strand at 2639.076 kb on - strand at 2639.093 kb on + strand at 2639.097 kb on + strand at 2639.102 kb on + strand at 2639.103 kb on - strand at 2639.103 kb on - strand at 2639.143 kb on + strand, within Echvi_2211 at 2639.144 kb on - strand, within Echvi_2211 at 2639.144 kb on - strand, within Echvi_2211 at 2639.174 kb on - strand, within Echvi_2211 at 2639.174 kb on - strand, within Echvi_2211 at 2639.174 kb on - strand, within Echvi_2211 at 2639.180 kb on - strand, within Echvi_2211 at 2639.180 kb on - strand, within Echvi_2211 at 2639.182 kb on - strand, within Echvi_2211 at 2639.210 kb on + strand, within Echvi_2211 at 2639.217 kb on + strand, within Echvi_2211 at 2639.217 kb on + strand, within Echvi_2211 at 2639.217 kb on + strand, within Echvi_2211 at 2639.217 kb on + strand, within Echvi_2211 at 2639.218 kb on - strand, within Echvi_2211 at 2639.218 kb on - strand, within Echvi_2211 at 2639.218 kb on - strand, within Echvi_2211 at 2639.218 kb on - strand, within Echvi_2211 at 2639.219 kb on + strand, within Echvi_2211 at 2639.249 kb on + strand at 2639.249 kb on + strand at 2639.271 kb on - strand at 2639.271 kb on - strand at 2639.333 kb on + strand at 2639.333 kb on + strand at 2639.333 kb on + strand at 2639.405 kb on - strand at 2639.408 kb on + strand at 2639.408 kb on + strand at 2639.540 kb on - strand at 2639.742 kb on + strand at 2639.743 kb on - strand at 2639.743 kb on - strand at 2639.745 kb on + strand at 2639.746 kb on - strand at 2639.746 kb on - strand at 2639.746 kb on - strand at 2639.747 kb on - strand at 2639.749 kb on - strand at 2639.848 kb on - strand at 2639.848 kb on - strand at 2639.848 kb on - strand at 2639.872 kb on - strand at 2639.918 kb on + strand at 2639.919 kb on - strand at 2639.971 kb on + strand at 2639.971 kb on + strand at 2639.972 kb on - strand at 2640.027 kb on - strand, within Echvi_2212 at 2640.027 kb on - strand, within Echvi_2212 at 2640.027 kb on - strand, within Echvi_2212 at 2640.027 kb on - strand, within Echvi_2212 at 2640.027 kb on - strand, within Echvi_2212 at 2640.028 kb on + strand, within Echvi_2212 at 2640.029 kb on - strand, within Echvi_2212 at 2640.062 kb on + strand, within Echvi_2212 at 2640.062 kb on + strand, within Echvi_2212 at 2640.063 kb on - strand, within Echvi_2212 at 2640.063 kb on - strand, within Echvi_2212 at 2640.166 kb on + strand, within Echvi_2212 at 2640.166 kb on + strand, within Echvi_2212 at 2640.166 kb on + strand, within Echvi_2212 at 2640.166 kb on + strand, within Echvi_2212 at 2640.303 kb on + strand, within Echvi_2212 at 2640.303 kb on + strand, within Echvi_2212 at 2640.454 kb on - strand at 2640.502 kb on + strand at 2640.582 kb on + strand, within Echvi_2213 at 2640.583 kb on - strand, within Echvi_2213 at 2640.670 kb on + strand, within Echvi_2213 at 2640.670 kb on + strand, within Echvi_2213 at 2640.683 kb on - strand, within Echvi_2213 at 2640.683 kb on - strand, within Echvi_2213 at 2640.750 kb on + strand, within Echvi_2213 at 2640.750 kb on + strand, within Echvi_2213 at 2640.750 kb on + strand, within Echvi_2213 at 2640.751 kb on - strand, within Echvi_2213 at 2640.751 kb on - strand, within Echvi_2213 at 2640.796 kb on + strand, within Echvi_2213 at 2640.796 kb on + strand, within Echvi_2213 at 2640.797 kb on - strand, within Echvi_2213 at 2640.802 kb on - strand, within Echvi_2213 at 2640.808 kb on + strand, within Echvi_2213 at 2640.809 kb on - strand, within Echvi_2213 at 2640.831 kb on - strand, within Echvi_2213 at 2640.862 kb on + strand, within Echvi_2213 at 2640.863 kb on - strand, within Echvi_2213 at 2640.885 kb on + strand, within Echvi_2213 at 2640.885 kb on + strand, within Echvi_2213 at 2640.885 kb on + strand, within Echvi_2213 at 2640.886 kb on - strand, within Echvi_2213 at 2640.886 kb on - strand, within Echvi_2213 at 2640.886 kb on - strand, within Echvi_2213 at 2641.075 kb on - strand, within Echvi_2213 at 2641.114 kb on - strand, within Echvi_2213 at 2641.212 kb on + strand at 2641.213 kb on - strand at 2641.351 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,638,979 + -0.5 2,638,980 - -0.2 2,638,983 - -0.3 2,639,047 - -0.8 2,639,059 + -1.5 2,639,060 - +2.2 2,639,066 - +0.5 2,639,076 - +1.0 2,639,093 + +0.5 2,639,097 + -0.4 2,639,102 + +0.4 2,639,103 - +1.9 2,639,103 - -0.3 2,639,143 + Echvi_2211 0.24 -1.8 2,639,144 - Echvi_2211 0.24 +0.8 2,639,144 - Echvi_2211 0.24 -0.2 2,639,174 - Echvi_2211 0.47 +0.8 2,639,174 - Echvi_2211 0.47 -1.1 2,639,174 - Echvi_2211 0.47 -0.2 2,639,180 - Echvi_2211 0.51 -0.7 2,639,180 - Echvi_2211 0.51 +1.4 2,639,182 - Echvi_2211 0.53 +0.9 2,639,210 + Echvi_2211 0.73 +1.1 2,639,217 + Echvi_2211 0.79 +1.1 2,639,217 + Echvi_2211 0.79 +0.9 2,639,217 + Echvi_2211 0.79 -1.9 2,639,217 + Echvi_2211 0.79 -2.4 2,639,218 - Echvi_2211 0.79 +0.6 2,639,218 - Echvi_2211 0.79 +1.1 2,639,218 - Echvi_2211 0.79 -0.7 2,639,218 - Echvi_2211 0.79 -2.0 2,639,219 + Echvi_2211 0.80 -1.4 2,639,249 + +0.7 2,639,249 + +1.6 2,639,271 - -0.4 2,639,271 - +0.9 2,639,333 + +0.9 2,639,333 + -0.4 2,639,333 + -0.0 2,639,405 - +1.7 2,639,408 + +0.8 2,639,408 + -0.1 2,639,540 - +0.6 2,639,742 + -1.2 2,639,743 - -2.4 2,639,743 - -1.4 2,639,745 + +0.2 2,639,746 - +0.9 2,639,746 - +0.5 2,639,746 - -1.9 2,639,747 - +0.6 2,639,749 - +0.4 2,639,848 - +0.6 2,639,848 - -2.6 2,639,848 - +1.6 2,639,872 - -1.4 2,639,918 + +0.2 2,639,919 - -0.9 2,639,971 + -2.7 2,639,971 + -2.2 2,639,972 - -0.5 2,640,027 - Echvi_2212 0.14 -2.4 2,640,027 - Echvi_2212 0.14 -4.2 2,640,027 - Echvi_2212 0.14 +0.5 2,640,027 - Echvi_2212 0.14 -2.4 2,640,027 - Echvi_2212 0.14 -1.1 2,640,028 + Echvi_2212 0.14 +0.8 2,640,029 - Echvi_2212 0.14 +0.0 2,640,062 + Echvi_2212 0.20 -2.5 2,640,062 + Echvi_2212 0.20 -0.6 2,640,063 - Echvi_2212 0.20 -1.0 2,640,063 - Echvi_2212 0.20 -2.0 2,640,166 + Echvi_2212 0.39 -0.9 2,640,166 + Echvi_2212 0.39 +0.1 2,640,166 + Echvi_2212 0.39 -0.5 2,640,166 + Echvi_2212 0.39 -0.5 2,640,303 + Echvi_2212 0.63 +0.2 2,640,303 + Echvi_2212 0.63 -1.1 2,640,454 - +0.7 2,640,502 + -3.3 2,640,582 + Echvi_2213 0.10 -0.5 2,640,583 - Echvi_2213 0.10 -0.2 2,640,670 + Echvi_2213 0.22 -0.2 2,640,670 + Echvi_2213 0.22 +0.2 2,640,683 - Echvi_2213 0.23 +1.4 2,640,683 - Echvi_2213 0.23 -1.4 2,640,750 + Echvi_2213 0.32 -0.2 2,640,750 + Echvi_2213 0.32 +1.0 2,640,750 + Echvi_2213 0.32 -2.2 2,640,751 - Echvi_2213 0.32 +2.1 2,640,751 - Echvi_2213 0.32 -1.8 2,640,796 + Echvi_2213 0.38 +1.1 2,640,796 + Echvi_2213 0.38 -1.8 2,640,797 - Echvi_2213 0.38 -1.2 2,640,802 - Echvi_2213 0.39 +0.8 2,640,808 + Echvi_2213 0.40 -1.0 2,640,809 - Echvi_2213 0.40 +0.2 2,640,831 - Echvi_2213 0.43 -0.0 2,640,862 + Echvi_2213 0.47 -1.4 2,640,863 - Echvi_2213 0.47 -0.6 2,640,885 + Echvi_2213 0.50 +0.6 2,640,885 + Echvi_2213 0.50 +0.9 2,640,885 + Echvi_2213 0.50 -0.2 2,640,886 - Echvi_2213 0.50 -1.4 2,640,886 - Echvi_2213 0.50 +0.9 2,640,886 - Echvi_2213 0.50 +0.5 2,641,075 - Echvi_2213 0.74 -2.5 2,641,114 - Echvi_2213 0.80 +0.1 2,641,212 + -1.7 2,641,213 - -3.2 2,641,351 + +0.9
Or see this region's nucleotide sequence