Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1870 and Echvi_1871 are separated by 668 nucleotides Echvi_1871 and Echvi_1872 are separated by 469 nucleotides Echvi_1872 and Echvi_1873 overlap by 4 nucleotides
Echvi_1870: Echvi_1870 - hypothetical protein, at 2,193,625 to 2,196,543
_1870
Echvi_1871: Echvi_1871 - transporter for D-glucose/D-galactose/D-xylose/methyl-beta-D-galactopyranoside (from data) , at 2,197,212 to 2,198,855
_1871
Echvi_1872: Echvi_1872 - hypothetical protein, at 2,199,325 to 2,199,807
_1872
Echvi_1873: Echvi_1873 - hypothetical protein, at 2,199,804 to 2,200,268
_1873
Position (kb)
2197
2198
2199 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2196.217 kb on - strand, within Echvi_1870 at 2196.246 kb on + strand, within Echvi_1870 at 2196.247 kb on - strand, within Echvi_1870 at 2196.306 kb on - strand at 2196.326 kb on + strand at 2196.432 kb on + strand at 2196.486 kb on - strand at 2196.576 kb on + strand at 2196.576 kb on + strand at 2196.630 kb on - strand at 2196.675 kb on + strand at 2196.675 kb on + strand at 2196.688 kb on + strand at 2196.688 kb on + strand at 2196.689 kb on - strand at 2196.743 kb on + strand at 2196.744 kb on - strand at 2196.744 kb on - strand at 2196.777 kb on - strand at 2196.788 kb on - strand at 2196.793 kb on - strand at 2196.793 kb on - strand at 2196.799 kb on + strand at 2196.800 kb on - strand at 2196.800 kb on - strand at 2196.800 kb on - strand at 2196.800 kb on - strand at 2196.800 kb on - strand at 2196.800 kb on - strand at 2196.800 kb on - strand at 2196.814 kb on + strand at 2196.814 kb on + strand at 2196.815 kb on - strand at 2196.823 kb on + strand at 2196.823 kb on + strand at 2196.823 kb on + strand at 2196.823 kb on + strand at 2196.915 kb on + strand at 2196.916 kb on - strand at 2196.952 kb on - strand at 2196.961 kb on + strand at 2196.968 kb on - strand at 2197.006 kb on + strand at 2197.130 kb on + strand at 2197.139 kb on + strand at 2197.140 kb on - strand at 2197.182 kb on + strand at 2197.196 kb on + strand at 2197.220 kb on + strand at 2197.229 kb on - strand at 2197.229 kb on - strand at 2197.234 kb on + strand at 2197.234 kb on + strand at 2197.235 kb on - strand at 2197.251 kb on + strand at 2197.309 kb on + strand at 2197.455 kb on + strand, within Echvi_1871 at 2197.455 kb on + strand, within Echvi_1871 at 2197.456 kb on - strand, within Echvi_1871 at 2197.456 kb on - strand, within Echvi_1871 at 2197.530 kb on + strand, within Echvi_1871 at 2197.531 kb on - strand, within Echvi_1871 at 2197.531 kb on - strand, within Echvi_1871 at 2197.531 kb on - strand, within Echvi_1871 at 2197.533 kb on - strand, within Echvi_1871 at 2197.573 kb on + strand, within Echvi_1871 at 2197.573 kb on + strand, within Echvi_1871 at 2197.574 kb on - strand, within Echvi_1871 at 2197.574 kb on - strand, within Echvi_1871 at 2197.608 kb on + strand, within Echvi_1871 at 2197.609 kb on - strand, within Echvi_1871 at 2197.609 kb on - strand, within Echvi_1871 at 2197.609 kb on - strand, within Echvi_1871 at 2197.609 kb on - strand, within Echvi_1871 at 2197.618 kb on + strand, within Echvi_1871 at 2197.636 kb on + strand, within Echvi_1871 at 2197.636 kb on + strand, within Echvi_1871 at 2197.637 kb on - strand, within Echvi_1871 at 2197.637 kb on - strand, within Echvi_1871 at 2197.639 kb on - strand, within Echvi_1871 at 2197.642 kb on + strand, within Echvi_1871 at 2197.642 kb on + strand, within Echvi_1871 at 2197.642 kb on + strand, within Echvi_1871 at 2197.643 kb on - strand, within Echvi_1871 at 2197.643 kb on - strand, within Echvi_1871 at 2197.686 kb on + strand, within Echvi_1871 at 2197.687 kb on - strand, within Echvi_1871 at 2197.722 kb on + strand, within Echvi_1871 at 2197.722 kb on + strand, within Echvi_1871 at 2197.731 kb on + strand, within Echvi_1871 at 2197.731 kb on + strand, within Echvi_1871 at 2197.731 kb on + strand, within Echvi_1871 at 2197.732 kb on - strand, within Echvi_1871 at 2197.732 kb on - strand, within Echvi_1871 at 2197.769 kb on - strand, within Echvi_1871 at 2197.769 kb on - strand, within Echvi_1871 at 2197.769 kb on - strand, within Echvi_1871 at 2197.809 kb on + strand, within Echvi_1871 at 2197.809 kb on + strand, within Echvi_1871 at 2197.810 kb on - strand, within Echvi_1871 at 2197.864 kb on + strand, within Echvi_1871 at 2197.892 kb on + strand, within Echvi_1871 at 2198.002 kb on + strand, within Echvi_1871 at 2198.014 kb on - strand, within Echvi_1871 at 2198.014 kb on - strand, within Echvi_1871 at 2198.014 kb on - strand, within Echvi_1871 at 2198.032 kb on - strand, within Echvi_1871 at 2198.032 kb on - strand, within Echvi_1871 at 2198.032 kb on - strand, within Echvi_1871 at 2198.151 kb on + strand, within Echvi_1871 at 2198.152 kb on - strand, within Echvi_1871 at 2198.186 kb on + strand, within Echvi_1871 at 2198.243 kb on + strand, within Echvi_1871 at 2198.243 kb on + strand, within Echvi_1871 at 2198.244 kb on - strand, within Echvi_1871 at 2198.244 kb on - strand, within Echvi_1871 at 2198.244 kb on - strand, within Echvi_1871 at 2198.258 kb on - strand, within Echvi_1871 at 2198.340 kb on - strand, within Echvi_1871 at 2198.355 kb on - strand, within Echvi_1871 at 2198.363 kb on + strand, within Echvi_1871 at 2198.364 kb on - strand, within Echvi_1871 at 2198.367 kb on + strand, within Echvi_1871 at 2198.435 kb on - strand, within Echvi_1871 at 2198.448 kb on - strand, within Echvi_1871 at 2198.500 kb on - strand, within Echvi_1871 at 2198.512 kb on - strand, within Echvi_1871 at 2198.595 kb on - strand, within Echvi_1871 at 2198.595 kb on - strand, within Echvi_1871 at 2198.634 kb on - strand, within Echvi_1871 at 2198.706 kb on - strand at 2198.706 kb on - strand at 2198.721 kb on + strand at 2198.722 kb on - strand at 2198.722 kb on - strand at 2198.830 kb on + strand at 2198.838 kb on + strand at 2198.993 kb on + strand at 2199.038 kb on + strand at 2199.039 kb on - strand at 2199.066 kb on - strand at 2199.066 kb on - strand at 2199.187 kb on - strand at 2199.187 kb on - strand at 2199.273 kb on - strand at 2199.290 kb on - strand at 2199.377 kb on + strand, within Echvi_1872 at 2199.377 kb on + strand, within Echvi_1872 at 2199.462 kb on - strand, within Echvi_1872 at 2199.466 kb on + strand, within Echvi_1872 at 2199.467 kb on - strand, within Echvi_1872 at 2199.467 kb on - strand, within Echvi_1872 at 2199.467 kb on - strand, within Echvi_1872 at 2199.478 kb on - strand, within Echvi_1872 at 2199.508 kb on + strand, within Echvi_1872 at 2199.509 kb on - strand, within Echvi_1872 at 2199.509 kb on - strand, within Echvi_1872 at 2199.592 kb on + strand, within Echvi_1872 at 2199.603 kb on + strand, within Echvi_1872 at 2199.603 kb on + strand, within Echvi_1872 at 2199.604 kb on - strand, within Echvi_1872 at 2199.604 kb on - strand, within Echvi_1872 at 2199.625 kb on + strand, within Echvi_1872 at 2199.625 kb on + strand, within Echvi_1872 at 2199.626 kb on - strand, within Echvi_1872 at 2199.635 kb on + strand, within Echvi_1872 at 2199.636 kb on - strand, within Echvi_1872 at 2199.670 kb on - strand, within Echvi_1872 at 2199.670 kb on - strand, within Echvi_1872 at 2199.699 kb on + strand, within Echvi_1872 at 2199.699 kb on + strand, within Echvi_1872 at 2199.714 kb on + strand, within Echvi_1872 at 2199.714 kb on + strand, within Echvi_1872 at 2199.715 kb on - strand, within Echvi_1872 at 2199.721 kb on + strand, within Echvi_1872 at 2199.723 kb on - strand, within Echvi_1872 at 2199.723 kb on - strand, within Echvi_1872 at 2199.788 kb on + strand at 2199.788 kb on + strand at 2199.792 kb on + strand at 2199.798 kb on - strand at 2199.798 kb on - strand at 2199.819 kb on - strand at 2199.819 kb on - strand at 2199.820 kb on + strand at 2199.820 kb on + strand at 2199.820 kb on + strand at 2199.821 kb on - strand at 2199.824 kb on + strand at 2199.824 kb on + strand at 2199.824 kb on + strand at 2199.825 kb on - strand at 2199.825 kb on - strand at 2199.825 kb on - strand at 2199.825 kb on - strand at 2199.825 kb on - strand at 2199.842 kb on - strand at 2199.851 kb on + strand, within Echvi_1873
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,196,217 - Echvi_1870 0.89 -1.5 2,196,246 + Echvi_1870 0.90 +1.4 2,196,247 - Echvi_1870 0.90 -0.4 2,196,306 - +0.5 2,196,326 + -1.4 2,196,432 + -2.3 2,196,486 - +1.1 2,196,576 + -0.7 2,196,576 + +1.1 2,196,630 - -0.8 2,196,675 + +0.5 2,196,675 + +0.2 2,196,688 + +0.8 2,196,688 + +1.6 2,196,689 - -0.6 2,196,743 + +0.2 2,196,744 - +0.4 2,196,744 - +0.3 2,196,777 - +1.0 2,196,788 - +0.8 2,196,793 - -1.2 2,196,793 - -0.6 2,196,799 + -0.4 2,196,800 - -0.6 2,196,800 - -1.4 2,196,800 - -0.4 2,196,800 - -0.1 2,196,800 - -2.3 2,196,800 - -1.1 2,196,800 - -0.0 2,196,814 + -1.0 2,196,814 + +0.7 2,196,815 - -2.4 2,196,823 + +2.1 2,196,823 + -0.2 2,196,823 + +0.6 2,196,823 + -0.1 2,196,915 + +0.2 2,196,916 - -1.4 2,196,952 - +0.1 2,196,961 + -0.4 2,196,968 - +0.2 2,197,006 + -0.2 2,197,130 + -1.2 2,197,139 + +0.2 2,197,140 - -1.2 2,197,182 + +2.4 2,197,196 + -1.2 2,197,220 + -1.9 2,197,229 - -2.8 2,197,229 - -3.2 2,197,234 + -2.6 2,197,234 + -2.4 2,197,235 - -3.1 2,197,251 + -1.4 2,197,309 + -2.5 2,197,455 + Echvi_1871 0.15 -1.1 2,197,455 + Echvi_1871 0.15 -2.4 2,197,456 - Echvi_1871 0.15 -2.4 2,197,456 - Echvi_1871 0.15 -1.7 2,197,530 + Echvi_1871 0.19 -2.5 2,197,531 - Echvi_1871 0.19 -2.5 2,197,531 - Echvi_1871 0.19 -2.4 2,197,531 - Echvi_1871 0.19 -2.7 2,197,533 - Echvi_1871 0.20 -1.5 2,197,573 + Echvi_1871 0.22 -4.1 2,197,573 + Echvi_1871 0.22 -2.2 2,197,574 - Echvi_1871 0.22 -1.0 2,197,574 - Echvi_1871 0.22 -1.7 2,197,608 + Echvi_1871 0.24 -0.1 2,197,609 - Echvi_1871 0.24 -0.4 2,197,609 - Echvi_1871 0.24 -3.1 2,197,609 - Echvi_1871 0.24 -2.4 2,197,609 - Echvi_1871 0.24 +0.2 2,197,618 + Echvi_1871 0.25 -2.8 2,197,636 + Echvi_1871 0.26 -4.1 2,197,636 + Echvi_1871 0.26 +0.2 2,197,637 - Echvi_1871 0.26 +1.0 2,197,637 - Echvi_1871 0.26 -1.2 2,197,639 - Echvi_1871 0.26 -1.0 2,197,642 + Echvi_1871 0.26 -1.2 2,197,642 + Echvi_1871 0.26 -1.1 2,197,642 + Echvi_1871 0.26 -2.2 2,197,643 - Echvi_1871 0.26 -2.5 2,197,643 - Echvi_1871 0.26 -2.8 2,197,686 + Echvi_1871 0.29 -2.0 2,197,687 - Echvi_1871 0.29 -1.1 2,197,722 + Echvi_1871 0.31 -2.9 2,197,722 + Echvi_1871 0.31 -1.7 2,197,731 + Echvi_1871 0.32 -1.1 2,197,731 + Echvi_1871 0.32 +0.2 2,197,731 + Echvi_1871 0.32 -1.3 2,197,732 - Echvi_1871 0.32 -3.5 2,197,732 - Echvi_1871 0.32 -1.9 2,197,769 - Echvi_1871 0.34 -1.0 2,197,769 - Echvi_1871 0.34 -3.3 2,197,769 - Echvi_1871 0.34 -1.4 2,197,809 + Echvi_1871 0.36 -2.0 2,197,809 + Echvi_1871 0.36 -1.3 2,197,810 - Echvi_1871 0.36 -2.0 2,197,864 + Echvi_1871 0.40 -2.9 2,197,892 + Echvi_1871 0.41 -1.9 2,198,002 + Echvi_1871 0.48 +0.1 2,198,014 - Echvi_1871 0.49 -3.6 2,198,014 - Echvi_1871 0.49 -3.0 2,198,014 - Echvi_1871 0.49 -0.4 2,198,032 - Echvi_1871 0.50 -2.2 2,198,032 - Echvi_1871 0.50 -3.1 2,198,032 - Echvi_1871 0.50 -2.8 2,198,151 + Echvi_1871 0.57 -0.4 2,198,152 - Echvi_1871 0.57 -2.5 2,198,186 + Echvi_1871 0.59 -3.6 2,198,243 + Echvi_1871 0.63 -0.6 2,198,243 + Echvi_1871 0.63 -2.8 2,198,244 - Echvi_1871 0.63 -2.0 2,198,244 - Echvi_1871 0.63 -2.2 2,198,244 - Echvi_1871 0.63 +1.2 2,198,258 - Echvi_1871 0.64 -3.0 2,198,340 - Echvi_1871 0.69 -4.1 2,198,355 - Echvi_1871 0.70 +0.2 2,198,363 + Echvi_1871 0.70 -2.9 2,198,364 - Echvi_1871 0.70 +0.3 2,198,367 + Echvi_1871 0.70 -1.5 2,198,435 - Echvi_1871 0.74 -1.4 2,198,448 - Echvi_1871 0.75 -1.4 2,198,500 - Echvi_1871 0.78 -2.1 2,198,512 - Echvi_1871 0.79 -3.4 2,198,595 - Echvi_1871 0.84 -3.9 2,198,595 - Echvi_1871 0.84 -0.4 2,198,634 - Echvi_1871 0.86 +0.2 2,198,706 - -0.6 2,198,706 - -3.6 2,198,721 + -2.2 2,198,722 - -0.8 2,198,722 - -0.4 2,198,830 + -0.1 2,198,838 + -2.5 2,198,993 + +1.0 2,199,038 + -1.4 2,199,039 - -1.0 2,199,066 - -1.5 2,199,066 - -1.2 2,199,187 - -1.3 2,199,187 - +0.6 2,199,273 - +2.8 2,199,290 - -1.0 2,199,377 + Echvi_1872 0.11 +2.9 2,199,377 + Echvi_1872 0.11 +1.0 2,199,462 - Echvi_1872 0.28 -2.2 2,199,466 + Echvi_1872 0.29 +0.9 2,199,467 - Echvi_1872 0.29 -1.5 2,199,467 - Echvi_1872 0.29 -2.2 2,199,467 - Echvi_1872 0.29 +0.6 2,199,478 - Echvi_1872 0.32 +0.1 2,199,508 + Echvi_1872 0.38 +1.2 2,199,509 - Echvi_1872 0.38 +0.2 2,199,509 - Echvi_1872 0.38 -0.6 2,199,592 + Echvi_1872 0.55 +0.7 2,199,603 + Echvi_1872 0.58 +0.1 2,199,603 + Echvi_1872 0.58 +0.0 2,199,604 - Echvi_1872 0.58 -1.4 2,199,604 - Echvi_1872 0.58 -1.0 2,199,625 + Echvi_1872 0.62 -0.5 2,199,625 + Echvi_1872 0.62 -0.8 2,199,626 - Echvi_1872 0.62 -1.7 2,199,635 + Echvi_1872 0.64 -0.5 2,199,636 - Echvi_1872 0.64 +3.0 2,199,670 - Echvi_1872 0.71 -0.4 2,199,670 - Echvi_1872 0.71 +0.6 2,199,699 + Echvi_1872 0.77 +0.2 2,199,699 + Echvi_1872 0.77 -0.1 2,199,714 + Echvi_1872 0.81 +0.2 2,199,714 + Echvi_1872 0.81 -0.8 2,199,715 - Echvi_1872 0.81 +1.3 2,199,721 + Echvi_1872 0.82 +1.0 2,199,723 - Echvi_1872 0.82 +1.3 2,199,723 - Echvi_1872 0.82 -0.4 2,199,788 + +0.9 2,199,788 + +0.1 2,199,792 + -0.8 2,199,798 - +0.3 2,199,798 - -0.2 2,199,819 - -0.8 2,199,819 - -0.0 2,199,820 + +0.2 2,199,820 + +0.5 2,199,820 + +0.4 2,199,821 - +2.0 2,199,824 + -2.5 2,199,824 + -0.1 2,199,824 + -0.4 2,199,825 - +0.4 2,199,825 - -3.4 2,199,825 - -0.1 2,199,825 - +1.8 2,199,825 - +1.9 2,199,842 - -0.4 2,199,851 + Echvi_1873 0.10 +1.2
Or see this region's nucleotide sequence