Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1871

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1870 and Echvi_1871 are separated by 668 nucleotidesEchvi_1871 and Echvi_1872 are separated by 469 nucleotidesEchvi_1872 and Echvi_1873 overlap by 4 nucleotides Echvi_1870: Echvi_1870 - hypothetical protein, at 2,193,625 to 2,196,543 _1870 Echvi_1871: Echvi_1871 - transporter for D-glucose/D-galactose/D-xylose/methyl-beta-D-galactopyranoside (from data), at 2,197,212 to 2,198,855 _1871 Echvi_1872: Echvi_1872 - hypothetical protein, at 2,199,325 to 2,199,807 _1872 Echvi_1873: Echvi_1873 - hypothetical protein, at 2,199,804 to 2,200,268 _1873 Position (kb) 2197 2198 2199Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2196.217 kb on - strand, within Echvi_1870at 2196.246 kb on + strand, within Echvi_1870at 2196.247 kb on - strand, within Echvi_1870at 2196.306 kb on - strandat 2196.326 kb on + strandat 2196.432 kb on + strandat 2196.486 kb on - strandat 2196.576 kb on + strandat 2196.576 kb on + strandat 2196.630 kb on - strandat 2196.675 kb on + strandat 2196.675 kb on + strandat 2196.688 kb on + strandat 2196.688 kb on + strandat 2196.689 kb on - strandat 2196.743 kb on + strandat 2196.744 kb on - strandat 2196.744 kb on - strandat 2196.777 kb on - strandat 2196.788 kb on - strandat 2196.793 kb on - strandat 2196.793 kb on - strandat 2196.799 kb on + strandat 2196.800 kb on - strandat 2196.800 kb on - strandat 2196.800 kb on - strandat 2196.800 kb on - strandat 2196.800 kb on - strandat 2196.800 kb on - strandat 2196.800 kb on - strandat 2196.814 kb on + strandat 2196.814 kb on + strandat 2196.815 kb on - strandat 2196.823 kb on + strandat 2196.823 kb on + strandat 2196.823 kb on + strandat 2196.823 kb on + strandat 2196.915 kb on + strandat 2196.916 kb on - strandat 2196.952 kb on - strandat 2196.961 kb on + strandat 2196.968 kb on - strandat 2197.006 kb on + strandat 2197.130 kb on + strandat 2197.139 kb on + strandat 2197.140 kb on - strandat 2197.182 kb on + strandat 2197.196 kb on + strandat 2197.220 kb on + strandat 2197.229 kb on - strandat 2197.229 kb on - strandat 2197.234 kb on + strandat 2197.234 kb on + strandat 2197.235 kb on - strandat 2197.251 kb on + strandat 2197.309 kb on + strandat 2197.455 kb on + strand, within Echvi_1871at 2197.455 kb on + strand, within Echvi_1871at 2197.456 kb on - strand, within Echvi_1871at 2197.456 kb on - strand, within Echvi_1871at 2197.530 kb on + strand, within Echvi_1871at 2197.531 kb on - strand, within Echvi_1871at 2197.531 kb on - strand, within Echvi_1871at 2197.531 kb on - strand, within Echvi_1871at 2197.533 kb on - strand, within Echvi_1871at 2197.573 kb on + strand, within Echvi_1871at 2197.573 kb on + strand, within Echvi_1871at 2197.574 kb on - strand, within Echvi_1871at 2197.574 kb on - strand, within Echvi_1871at 2197.608 kb on + strand, within Echvi_1871at 2197.609 kb on - strand, within Echvi_1871at 2197.609 kb on - strand, within Echvi_1871at 2197.609 kb on - strand, within Echvi_1871at 2197.609 kb on - strand, within Echvi_1871at 2197.618 kb on + strand, within Echvi_1871at 2197.636 kb on + strand, within Echvi_1871at 2197.636 kb on + strand, within Echvi_1871at 2197.637 kb on - strand, within Echvi_1871at 2197.637 kb on - strand, within Echvi_1871at 2197.639 kb on - strand, within Echvi_1871at 2197.642 kb on + strand, within Echvi_1871at 2197.642 kb on + strand, within Echvi_1871at 2197.642 kb on + strand, within Echvi_1871at 2197.643 kb on - strand, within Echvi_1871at 2197.643 kb on - strand, within Echvi_1871at 2197.686 kb on + strand, within Echvi_1871at 2197.687 kb on - strand, within Echvi_1871at 2197.722 kb on + strand, within Echvi_1871at 2197.722 kb on + strand, within Echvi_1871at 2197.731 kb on + strand, within Echvi_1871at 2197.731 kb on + strand, within Echvi_1871at 2197.731 kb on + strand, within Echvi_1871at 2197.732 kb on - strand, within Echvi_1871at 2197.732 kb on - strand, within Echvi_1871at 2197.769 kb on - strand, within Echvi_1871at 2197.769 kb on - strand, within Echvi_1871at 2197.769 kb on - strand, within Echvi_1871at 2197.809 kb on + strand, within Echvi_1871at 2197.809 kb on + strand, within Echvi_1871at 2197.810 kb on - strand, within Echvi_1871at 2197.864 kb on + strand, within Echvi_1871at 2197.892 kb on + strand, within Echvi_1871at 2198.002 kb on + strand, within Echvi_1871at 2198.014 kb on - strand, within Echvi_1871at 2198.014 kb on - strand, within Echvi_1871at 2198.014 kb on - strand, within Echvi_1871at 2198.032 kb on - strand, within Echvi_1871at 2198.032 kb on - strand, within Echvi_1871at 2198.032 kb on - strand, within Echvi_1871at 2198.151 kb on + strand, within Echvi_1871at 2198.152 kb on - strand, within Echvi_1871at 2198.186 kb on + strand, within Echvi_1871at 2198.243 kb on + strand, within Echvi_1871at 2198.243 kb on + strand, within Echvi_1871at 2198.244 kb on - strand, within Echvi_1871at 2198.244 kb on - strand, within Echvi_1871at 2198.244 kb on - strand, within Echvi_1871at 2198.258 kb on - strand, within Echvi_1871at 2198.340 kb on - strand, within Echvi_1871at 2198.355 kb on - strand, within Echvi_1871at 2198.363 kb on + strand, within Echvi_1871at 2198.364 kb on - strand, within Echvi_1871at 2198.367 kb on + strand, within Echvi_1871at 2198.435 kb on - strand, within Echvi_1871at 2198.448 kb on - strand, within Echvi_1871at 2198.500 kb on - strand, within Echvi_1871at 2198.512 kb on - strand, within Echvi_1871at 2198.595 kb on - strand, within Echvi_1871at 2198.595 kb on - strand, within Echvi_1871at 2198.634 kb on - strand, within Echvi_1871at 2198.706 kb on - strandat 2198.706 kb on - strandat 2198.721 kb on + strandat 2198.722 kb on - strandat 2198.722 kb on - strandat 2198.830 kb on + strandat 2198.838 kb on + strandat 2198.993 kb on + strandat 2199.038 kb on + strandat 2199.039 kb on - strandat 2199.066 kb on - strandat 2199.066 kb on - strandat 2199.187 kb on - strandat 2199.187 kb on - strandat 2199.273 kb on - strandat 2199.290 kb on - strandat 2199.377 kb on + strand, within Echvi_1872at 2199.377 kb on + strand, within Echvi_1872at 2199.462 kb on - strand, within Echvi_1872at 2199.466 kb on + strand, within Echvi_1872at 2199.467 kb on - strand, within Echvi_1872at 2199.467 kb on - strand, within Echvi_1872at 2199.467 kb on - strand, within Echvi_1872at 2199.478 kb on - strand, within Echvi_1872at 2199.508 kb on + strand, within Echvi_1872at 2199.509 kb on - strand, within Echvi_1872at 2199.509 kb on - strand, within Echvi_1872at 2199.592 kb on + strand, within Echvi_1872at 2199.603 kb on + strand, within Echvi_1872at 2199.603 kb on + strand, within Echvi_1872at 2199.604 kb on - strand, within Echvi_1872at 2199.604 kb on - strand, within Echvi_1872at 2199.625 kb on + strand, within Echvi_1872at 2199.625 kb on + strand, within Echvi_1872at 2199.626 kb on - strand, within Echvi_1872at 2199.635 kb on + strand, within Echvi_1872at 2199.636 kb on - strand, within Echvi_1872at 2199.670 kb on - strand, within Echvi_1872at 2199.670 kb on - strand, within Echvi_1872at 2199.699 kb on + strand, within Echvi_1872at 2199.699 kb on + strand, within Echvi_1872at 2199.714 kb on + strand, within Echvi_1872at 2199.714 kb on + strand, within Echvi_1872at 2199.715 kb on - strand, within Echvi_1872at 2199.721 kb on + strand, within Echvi_1872at 2199.723 kb on - strand, within Echvi_1872at 2199.723 kb on - strand, within Echvi_1872at 2199.788 kb on + strandat 2199.788 kb on + strandat 2199.792 kb on + strandat 2199.798 kb on - strandat 2199.798 kb on - strandat 2199.819 kb on - strandat 2199.819 kb on - strandat 2199.820 kb on + strandat 2199.820 kb on + strandat 2199.820 kb on + strandat 2199.821 kb on - strandat 2199.824 kb on + strandat 2199.824 kb on + strandat 2199.824 kb on + strandat 2199.825 kb on - strandat 2199.825 kb on - strandat 2199.825 kb on - strandat 2199.825 kb on - strandat 2199.825 kb on - strandat 2199.842 kb on - strandat 2199.851 kb on + strand, within Echvi_1873

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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2,196,217 - Echvi_1870 0.89 -1.5
2,196,246 + Echvi_1870 0.90 +1.4
2,196,247 - Echvi_1870 0.90 -0.4
2,196,306 - +0.5
2,196,326 + -1.4
2,196,432 + -2.3
2,196,486 - +1.1
2,196,576 + -0.7
2,196,576 + +1.1
2,196,630 - -0.8
2,196,675 + +0.5
2,196,675 + +0.2
2,196,688 + +0.8
2,196,688 + +1.6
2,196,689 - -0.6
2,196,743 + +0.2
2,196,744 - +0.4
2,196,744 - +0.3
2,196,777 - +1.0
2,196,788 - +0.8
2,196,793 - -1.2
2,196,793 - -0.6
2,196,799 + -0.4
2,196,800 - -0.6
2,196,800 - -1.4
2,196,800 - -0.4
2,196,800 - -0.1
2,196,800 - -2.3
2,196,800 - -1.1
2,196,800 - -0.0
2,196,814 + -1.0
2,196,814 + +0.7
2,196,815 - -2.4
2,196,823 + +2.1
2,196,823 + -0.2
2,196,823 + +0.6
2,196,823 + -0.1
2,196,915 + +0.2
2,196,916 - -1.4
2,196,952 - +0.1
2,196,961 + -0.4
2,196,968 - +0.2
2,197,006 + -0.2
2,197,130 + -1.2
2,197,139 + +0.2
2,197,140 - -1.2
2,197,182 + +2.4
2,197,196 + -1.2
2,197,220 + -1.9
2,197,229 - -2.8
2,197,229 - -3.2
2,197,234 + -2.6
2,197,234 + -2.4
2,197,235 - -3.1
2,197,251 + -1.4
2,197,309 + -2.5
2,197,455 + Echvi_1871 0.15 -1.1
2,197,455 + Echvi_1871 0.15 -2.4
2,197,456 - Echvi_1871 0.15 -2.4
2,197,456 - Echvi_1871 0.15 -1.7
2,197,530 + Echvi_1871 0.19 -2.5
2,197,531 - Echvi_1871 0.19 -2.5
2,197,531 - Echvi_1871 0.19 -2.4
2,197,531 - Echvi_1871 0.19 -2.7
2,197,533 - Echvi_1871 0.20 -1.5
2,197,573 + Echvi_1871 0.22 -4.1
2,197,573 + Echvi_1871 0.22 -2.2
2,197,574 - Echvi_1871 0.22 -1.0
2,197,574 - Echvi_1871 0.22 -1.7
2,197,608 + Echvi_1871 0.24 -0.1
2,197,609 - Echvi_1871 0.24 -0.4
2,197,609 - Echvi_1871 0.24 -3.1
2,197,609 - Echvi_1871 0.24 -2.4
2,197,609 - Echvi_1871 0.24 +0.2
2,197,618 + Echvi_1871 0.25 -2.8
2,197,636 + Echvi_1871 0.26 -4.1
2,197,636 + Echvi_1871 0.26 +0.2
2,197,637 - Echvi_1871 0.26 +1.0
2,197,637 - Echvi_1871 0.26 -1.2
2,197,639 - Echvi_1871 0.26 -1.0
2,197,642 + Echvi_1871 0.26 -1.2
2,197,642 + Echvi_1871 0.26 -1.1
2,197,642 + Echvi_1871 0.26 -2.2
2,197,643 - Echvi_1871 0.26 -2.5
2,197,643 - Echvi_1871 0.26 -2.8
2,197,686 + Echvi_1871 0.29 -2.0
2,197,687 - Echvi_1871 0.29 -1.1
2,197,722 + Echvi_1871 0.31 -2.9
2,197,722 + Echvi_1871 0.31 -1.7
2,197,731 + Echvi_1871 0.32 -1.1
2,197,731 + Echvi_1871 0.32 +0.2
2,197,731 + Echvi_1871 0.32 -1.3
2,197,732 - Echvi_1871 0.32 -3.5
2,197,732 - Echvi_1871 0.32 -1.9
2,197,769 - Echvi_1871 0.34 -1.0
2,197,769 - Echvi_1871 0.34 -3.3
2,197,769 - Echvi_1871 0.34 -1.4
2,197,809 + Echvi_1871 0.36 -2.0
2,197,809 + Echvi_1871 0.36 -1.3
2,197,810 - Echvi_1871 0.36 -2.0
2,197,864 + Echvi_1871 0.40 -2.9
2,197,892 + Echvi_1871 0.41 -1.9
2,198,002 + Echvi_1871 0.48 +0.1
2,198,014 - Echvi_1871 0.49 -3.6
2,198,014 - Echvi_1871 0.49 -3.0
2,198,014 - Echvi_1871 0.49 -0.4
2,198,032 - Echvi_1871 0.50 -2.2
2,198,032 - Echvi_1871 0.50 -3.1
2,198,032 - Echvi_1871 0.50 -2.8
2,198,151 + Echvi_1871 0.57 -0.4
2,198,152 - Echvi_1871 0.57 -2.5
2,198,186 + Echvi_1871 0.59 -3.6
2,198,243 + Echvi_1871 0.63 -0.6
2,198,243 + Echvi_1871 0.63 -2.8
2,198,244 - Echvi_1871 0.63 -2.0
2,198,244 - Echvi_1871 0.63 -2.2
2,198,244 - Echvi_1871 0.63 +1.2
2,198,258 - Echvi_1871 0.64 -3.0
2,198,340 - Echvi_1871 0.69 -4.1
2,198,355 - Echvi_1871 0.70 +0.2
2,198,363 + Echvi_1871 0.70 -2.9
2,198,364 - Echvi_1871 0.70 +0.3
2,198,367 + Echvi_1871 0.70 -1.5
2,198,435 - Echvi_1871 0.74 -1.4
2,198,448 - Echvi_1871 0.75 -1.4
2,198,500 - Echvi_1871 0.78 -2.1
2,198,512 - Echvi_1871 0.79 -3.4
2,198,595 - Echvi_1871 0.84 -3.9
2,198,595 - Echvi_1871 0.84 -0.4
2,198,634 - Echvi_1871 0.86 +0.2
2,198,706 - -0.6
2,198,706 - -3.6
2,198,721 + -2.2
2,198,722 - -0.8
2,198,722 - -0.4
2,198,830 + -0.1
2,198,838 + -2.5
2,198,993 + +1.0
2,199,038 + -1.4
2,199,039 - -1.0
2,199,066 - -1.5
2,199,066 - -1.2
2,199,187 - -1.3
2,199,187 - +0.6
2,199,273 - +2.8
2,199,290 - -1.0
2,199,377 + Echvi_1872 0.11 +2.9
2,199,377 + Echvi_1872 0.11 +1.0
2,199,462 - Echvi_1872 0.28 -2.2
2,199,466 + Echvi_1872 0.29 +0.9
2,199,467 - Echvi_1872 0.29 -1.5
2,199,467 - Echvi_1872 0.29 -2.2
2,199,467 - Echvi_1872 0.29 +0.6
2,199,478 - Echvi_1872 0.32 +0.1
2,199,508 + Echvi_1872 0.38 +1.2
2,199,509 - Echvi_1872 0.38 +0.2
2,199,509 - Echvi_1872 0.38 -0.6
2,199,592 + Echvi_1872 0.55 +0.7
2,199,603 + Echvi_1872 0.58 +0.1
2,199,603 + Echvi_1872 0.58 +0.0
2,199,604 - Echvi_1872 0.58 -1.4
2,199,604 - Echvi_1872 0.58 -1.0
2,199,625 + Echvi_1872 0.62 -0.5
2,199,625 + Echvi_1872 0.62 -0.8
2,199,626 - Echvi_1872 0.62 -1.7
2,199,635 + Echvi_1872 0.64 -0.5
2,199,636 - Echvi_1872 0.64 +3.0
2,199,670 - Echvi_1872 0.71 -0.4
2,199,670 - Echvi_1872 0.71 +0.6
2,199,699 + Echvi_1872 0.77 +0.2
2,199,699 + Echvi_1872 0.77 -0.1
2,199,714 + Echvi_1872 0.81 +0.2
2,199,714 + Echvi_1872 0.81 -0.8
2,199,715 - Echvi_1872 0.81 +1.3
2,199,721 + Echvi_1872 0.82 +1.0
2,199,723 - Echvi_1872 0.82 +1.3
2,199,723 - Echvi_1872 0.82 -0.4
2,199,788 + +0.9
2,199,788 + +0.1
2,199,792 + -0.8
2,199,798 - +0.3
2,199,798 - -0.2
2,199,819 - -0.8
2,199,819 - -0.0
2,199,820 + +0.2
2,199,820 + +0.5
2,199,820 + +0.4
2,199,821 - +2.0
2,199,824 + -2.5
2,199,824 + -0.1
2,199,824 + -0.4
2,199,825 - +0.4
2,199,825 - -3.4
2,199,825 - -0.1
2,199,825 - +1.8
2,199,825 - +1.9
2,199,842 - -0.4
2,199,851 + Echvi_1873 0.10 +1.2

Or see this region's nucleotide sequence