Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1857 and Echvi_1858 are separated by 56 nucleotides Echvi_1858 and Echvi_1859 are separated by 435 nucleotides
Echvi_1857: Echvi_1857 - SusD family., at 2,171,689 to 2,173,176
_1857
Echvi_1858: Echvi_1858 - TonB-linked outer membrane protein, SusC/RagA family, at 2,173,233 to 2,176,343
_1858
Echvi_1859: Echvi_1859 - Transposase DDE domain., at 2,176,779 to 2,177,675
_1859
Position (kb)
2173
2174
2175
2176
2177 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2172.290 kb on + strand, within Echvi_1857 at 2172.291 kb on - strand, within Echvi_1857 at 2172.291 kb on - strand, within Echvi_1857 at 2172.316 kb on + strand, within Echvi_1857 at 2172.340 kb on + strand, within Echvi_1857 at 2172.340 kb on + strand, within Echvi_1857 at 2172.341 kb on - strand, within Echvi_1857 at 2172.452 kb on + strand, within Echvi_1857 at 2172.536 kb on + strand, within Echvi_1857 at 2172.537 kb on - strand, within Echvi_1857 at 2172.537 kb on - strand, within Echvi_1857 at 2172.539 kb on - strand, within Echvi_1857 at 2172.550 kb on + strand, within Echvi_1857 at 2172.551 kb on - strand at 2172.551 kb on - strand, within Echvi_1857 at 2172.574 kb on - strand, within Echvi_1857 at 2172.646 kb on + strand, within Echvi_1857 at 2172.646 kb on + strand, within Echvi_1857 at 2172.689 kb on + strand, within Echvi_1857 at 2172.689 kb on + strand, within Echvi_1857 at 2172.689 kb on + strand, within Echvi_1857 at 2172.689 kb on + strand, within Echvi_1857 at 2172.690 kb on - strand, within Echvi_1857 at 2172.690 kb on - strand, within Echvi_1857 at 2172.690 kb on - strand, within Echvi_1857 at 2172.690 kb on - strand, within Echvi_1857 at 2172.690 kb on - strand, within Echvi_1857 at 2172.690 kb on - strand, within Echvi_1857 at 2172.690 kb on - strand, within Echvi_1857 at 2172.703 kb on - strand, within Echvi_1857 at 2172.703 kb on - strand, within Echvi_1857 at 2172.764 kb on + strand, within Echvi_1857 at 2172.773 kb on - strand, within Echvi_1857 at 2172.792 kb on + strand, within Echvi_1857 at 2172.793 kb on - strand, within Echvi_1857 at 2172.806 kb on - strand, within Echvi_1857 at 2172.847 kb on + strand, within Echvi_1857 at 2172.847 kb on + strand, within Echvi_1857 at 2172.848 kb on - strand, within Echvi_1857 at 2172.863 kb on - strand, within Echvi_1857 at 2172.934 kb on + strand, within Echvi_1857 at 2172.935 kb on - strand, within Echvi_1857 at 2172.935 kb on - strand, within Echvi_1857 at 2172.977 kb on + strand, within Echvi_1857 at 2173.046 kb on - strand at 2173.052 kb on + strand at 2173.097 kb on + strand at 2173.097 kb on + strand at 2173.108 kb on + strand at 2173.108 kb on + strand at 2173.190 kb on - strand at 2173.190 kb on - strand at 2173.190 kb on - strand at 2173.201 kb on - strand at 2173.254 kb on + strand at 2173.254 kb on + strand at 2173.254 kb on + strand at 2173.254 kb on + strand at 2173.254 kb on + strand at 2173.255 kb on - strand at 2173.255 kb on - strand at 2173.259 kb on + strand at 2173.259 kb on + strand at 2173.259 kb on + strand at 2173.261 kb on + strand at 2173.261 kb on + strand at 2173.327 kb on + strand at 2173.327 kb on + strand at 2173.328 kb on - strand at 2173.372 kb on + strand at 2173.372 kb on + strand at 2173.373 kb on - strand at 2173.373 kb on - strand at 2173.391 kb on + strand at 2173.400 kb on + strand at 2173.424 kb on + strand at 2173.424 kb on + strand at 2173.424 kb on + strand at 2173.424 kb on + strand at 2173.425 kb on - strand at 2173.425 kb on - strand at 2173.425 kb on - strand at 2173.425 kb on - strand at 2173.425 kb on - strand at 2173.425 kb on - strand at 2173.456 kb on + strand at 2173.474 kb on + strand at 2173.518 kb on + strand at 2173.519 kb on - strand at 2173.532 kb on - strand at 2173.657 kb on - strand, within Echvi_1858 at 2173.670 kb on + strand, within Echvi_1858 at 2173.671 kb on - strand, within Echvi_1858 at 2173.699 kb on + strand, within Echvi_1858 at 2173.715 kb on + strand, within Echvi_1858 at 2173.749 kb on + strand, within Echvi_1858 at 2173.834 kb on + strand, within Echvi_1858 at 2173.834 kb on + strand, within Echvi_1858 at 2173.835 kb on - strand, within Echvi_1858 at 2173.885 kb on + strand, within Echvi_1858 at 2174.058 kb on - strand, within Echvi_1858 at 2174.058 kb on - strand, within Echvi_1858 at 2174.058 kb on - strand, within Echvi_1858 at 2174.100 kb on + strand, within Echvi_1858 at 2174.100 kb on + strand, within Echvi_1858 at 2174.100 kb on + strand, within Echvi_1858 at 2174.135 kb on - strand, within Echvi_1858 at 2174.291 kb on + strand, within Echvi_1858 at 2174.293 kb on + strand, within Echvi_1858 at 2174.305 kb on + strand, within Echvi_1858 at 2174.305 kb on + strand, within Echvi_1858 at 2174.305 kb on + strand, within Echvi_1858 at 2174.305 kb on + strand, within Echvi_1858 at 2174.306 kb on - strand, within Echvi_1858 at 2174.306 kb on - strand, within Echvi_1858 at 2174.329 kb on + strand, within Echvi_1858 at 2174.330 kb on - strand, within Echvi_1858 at 2174.346 kb on + strand, within Echvi_1858 at 2174.346 kb on + strand, within Echvi_1858 at 2174.346 kb on + strand, within Echvi_1858 at 2174.347 kb on - strand, within Echvi_1858 at 2174.347 kb on - strand, within Echvi_1858 at 2174.347 kb on - strand, within Echvi_1858 at 2174.375 kb on + strand, within Echvi_1858 at 2174.375 kb on + strand, within Echvi_1858 at 2174.558 kb on - strand, within Echvi_1858 at 2174.569 kb on + strand, within Echvi_1858 at 2174.570 kb on - strand, within Echvi_1858 at 2174.570 kb on - strand, within Echvi_1858 at 2174.602 kb on - strand, within Echvi_1858 at 2174.602 kb on - strand, within Echvi_1858 at 2174.740 kb on + strand, within Echvi_1858 at 2174.741 kb on - strand, within Echvi_1858 at 2174.794 kb on + strand, within Echvi_1858 at 2174.881 kb on - strand, within Echvi_1858 at 2174.951 kb on + strand, within Echvi_1858 at 2174.951 kb on + strand, within Echvi_1858 at 2174.951 kb on + strand, within Echvi_1858 at 2175.014 kb on - strand, within Echvi_1858 at 2175.037 kb on + strand, within Echvi_1858 at 2175.037 kb on + strand, within Echvi_1858 at 2175.037 kb on + strand, within Echvi_1858 at 2175.037 kb on + strand, within Echvi_1858 at 2175.038 kb on - strand, within Echvi_1858 at 2175.189 kb on + strand, within Echvi_1858 at 2175.190 kb on - strand, within Echvi_1858 at 2175.313 kb on - strand, within Echvi_1858 at 2175.423 kb on - strand, within Echvi_1858 at 2175.423 kb on - strand, within Echvi_1858 at 2175.459 kb on - strand, within Echvi_1858 at 2175.493 kb on + strand, within Echvi_1858 at 2175.614 kb on - strand, within Echvi_1858 at 2175.614 kb on - strand, within Echvi_1858 at 2175.616 kb on + strand, within Echvi_1858 at 2175.625 kb on + strand, within Echvi_1858 at 2175.626 kb on - strand, within Echvi_1858 at 2175.626 kb on - strand, within Echvi_1858 at 2175.700 kb on + strand, within Echvi_1858 at 2175.701 kb on - strand, within Echvi_1858 at 2175.701 kb on - strand, within Echvi_1858 at 2175.701 kb on - strand, within Echvi_1858 at 2175.729 kb on + strand, within Echvi_1858 at 2175.790 kb on - strand, within Echvi_1858 at 2175.849 kb on + strand, within Echvi_1858 at 2175.906 kb on - strand, within Echvi_1858 at 2175.944 kb on + strand, within Echvi_1858 at 2175.944 kb on + strand, within Echvi_1858 at 2175.944 kb on + strand, within Echvi_1858 at 2175.945 kb on - strand, within Echvi_1858 at 2175.945 kb on - strand, within Echvi_1858 at 2175.951 kb on + strand, within Echvi_1858 at 2176.006 kb on - strand, within Echvi_1858 at 2176.133 kb on + strand at 2176.159 kb on + strand at 2176.179 kb on - strand at 2176.209 kb on + strand at 2176.216 kb on - strand at 2176.245 kb on - strand at 2176.251 kb on + strand at 2176.264 kb on - strand at 2176.264 kb on - strand at 2176.283 kb on - strand at 2176.283 kb on - strand at 2176.287 kb on + strand at 2176.287 kb on + strand at 2176.287 kb on + strand at 2176.288 kb on - strand at 2176.288 kb on - strand at 2176.344 kb on - strand at 2176.344 kb on - strand at 2176.344 kb on - strand at 2176.362 kb on - strand at 2176.387 kb on - strand at 2176.514 kb on - strand at 2176.522 kb on - strand at 2176.524 kb on + strand at 2176.525 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,172,290 + Echvi_1857 0.40 -0.1 2,172,291 - Echvi_1857 0.40 +0.8 2,172,291 - Echvi_1857 0.40 -0.3 2,172,316 + Echvi_1857 0.42 +0.6 2,172,340 + Echvi_1857 0.44 +0.8 2,172,340 + Echvi_1857 0.44 +0.7 2,172,341 - Echvi_1857 0.44 +1.2 2,172,452 + Echvi_1857 0.51 +1.9 2,172,536 + Echvi_1857 0.57 +0.3 2,172,537 - Echvi_1857 0.57 +1.3 2,172,537 - Echvi_1857 0.57 +0.8 2,172,539 - Echvi_1857 0.57 -0.5 2,172,550 + Echvi_1857 0.58 +1.5 2,172,551 - +0.6 2,172,551 - Echvi_1857 0.58 -0.7 2,172,574 - Echvi_1857 0.59 +2.3 2,172,646 + Echvi_1857 0.64 +0.0 2,172,646 + Echvi_1857 0.64 +0.1 2,172,689 + Echvi_1857 0.67 +1.2 2,172,689 + Echvi_1857 0.67 -0.1 2,172,689 + Echvi_1857 0.67 -1.1 2,172,689 + Echvi_1857 0.67 +0.6 2,172,690 - Echvi_1857 0.67 +1.1 2,172,690 - Echvi_1857 0.67 +0.3 2,172,690 - Echvi_1857 0.67 +1.1 2,172,690 - Echvi_1857 0.67 +0.2 2,172,690 - Echvi_1857 0.67 -0.8 2,172,690 - Echvi_1857 0.67 +0.8 2,172,690 - Echvi_1857 0.67 +0.3 2,172,703 - Echvi_1857 0.68 -0.5 2,172,703 - Echvi_1857 0.68 +1.1 2,172,764 + Echvi_1857 0.72 +0.0 2,172,773 - Echvi_1857 0.73 -3.0 2,172,792 + Echvi_1857 0.74 +0.5 2,172,793 - Echvi_1857 0.74 +0.2 2,172,806 - Echvi_1857 0.75 +0.5 2,172,847 + Echvi_1857 0.78 +1.8 2,172,847 + Echvi_1857 0.78 -1.7 2,172,848 - Echvi_1857 0.78 +0.6 2,172,863 - Echvi_1857 0.79 +0.5 2,172,934 + Echvi_1857 0.84 -0.3 2,172,935 - Echvi_1857 0.84 +0.3 2,172,935 - Echvi_1857 0.84 +0.0 2,172,977 + Echvi_1857 0.87 +1.6 2,173,046 - -1.4 2,173,052 + -1.3 2,173,097 + -1.0 2,173,097 + +0.0 2,173,108 + -1.4 2,173,108 + +0.3 2,173,190 - +1.7 2,173,190 - -0.8 2,173,190 - -1.9 2,173,201 - +0.0 2,173,254 + +1.8 2,173,254 + +0.0 2,173,254 + +3.5 2,173,254 + -0.2 2,173,254 + +1.5 2,173,255 - +0.7 2,173,255 - +0.1 2,173,259 + -1.9 2,173,259 + +0.1 2,173,259 + +1.1 2,173,261 + -1.0 2,173,261 + -2.0 2,173,327 + -0.1 2,173,327 + -0.9 2,173,328 - +2.8 2,173,372 + -0.5 2,173,372 + -0.1 2,173,373 - +0.6 2,173,373 - +1.3 2,173,391 + +1.4 2,173,400 + +0.0 2,173,424 + +1.6 2,173,424 + -3.1 2,173,424 + -1.0 2,173,424 + +1.0 2,173,425 - -1.0 2,173,425 - +1.4 2,173,425 - -1.9 2,173,425 - -1.0 2,173,425 - -0.6 2,173,425 - +0.6 2,173,456 + +0.5 2,173,474 + +1.0 2,173,518 + +0.2 2,173,519 - +0.8 2,173,532 - +2.4 2,173,657 - Echvi_1858 0.14 -3.3 2,173,670 + Echvi_1858 0.14 +0.6 2,173,671 - Echvi_1858 0.14 -0.1 2,173,699 + Echvi_1858 0.15 +0.6 2,173,715 + Echvi_1858 0.15 +2.0 2,173,749 + Echvi_1858 0.17 -1.6 2,173,834 + Echvi_1858 0.19 +1.4 2,173,834 + Echvi_1858 0.19 -2.0 2,173,835 - Echvi_1858 0.19 -0.6 2,173,885 + Echvi_1858 0.21 -0.1 2,174,058 - Echvi_1858 0.27 +2.0 2,174,058 - Echvi_1858 0.27 +2.2 2,174,058 - Echvi_1858 0.27 +0.6 2,174,100 + Echvi_1858 0.28 +0.9 2,174,100 + Echvi_1858 0.28 +0.7 2,174,100 + Echvi_1858 0.28 -1.1 2,174,135 - Echvi_1858 0.29 +1.8 2,174,291 + Echvi_1858 0.34 +0.3 2,174,293 + Echvi_1858 0.34 +0.6 2,174,305 + Echvi_1858 0.34 -1.3 2,174,305 + Echvi_1858 0.34 -0.9 2,174,305 + Echvi_1858 0.34 -2.3 2,174,305 + Echvi_1858 0.34 -1.7 2,174,306 - Echvi_1858 0.34 -0.3 2,174,306 - Echvi_1858 0.34 -1.8 2,174,329 + Echvi_1858 0.35 +0.4 2,174,330 - Echvi_1858 0.35 +1.1 2,174,346 + Echvi_1858 0.36 +1.2 2,174,346 + Echvi_1858 0.36 -0.1 2,174,346 + Echvi_1858 0.36 +0.6 2,174,347 - Echvi_1858 0.36 -0.1 2,174,347 - Echvi_1858 0.36 +1.6 2,174,347 - Echvi_1858 0.36 -0.8 2,174,375 + Echvi_1858 0.37 -1.1 2,174,375 + Echvi_1858 0.37 -0.6 2,174,558 - Echvi_1858 0.43 -0.8 2,174,569 + Echvi_1858 0.43 +1.5 2,174,570 - Echvi_1858 0.43 +2.7 2,174,570 - Echvi_1858 0.43 -2.0 2,174,602 - Echvi_1858 0.44 +0.8 2,174,602 - Echvi_1858 0.44 +0.6 2,174,740 + Echvi_1858 0.48 +0.9 2,174,741 - Echvi_1858 0.48 -0.7 2,174,794 + Echvi_1858 0.50 -0.7 2,174,881 - Echvi_1858 0.53 -0.2 2,174,951 + Echvi_1858 0.55 -2.3 2,174,951 + Echvi_1858 0.55 -0.6 2,174,951 + Echvi_1858 0.55 +1.4 2,175,014 - Echvi_1858 0.57 +1.5 2,175,037 + Echvi_1858 0.58 -1.0 2,175,037 + Echvi_1858 0.58 +2.2 2,175,037 + Echvi_1858 0.58 -1.3 2,175,037 + Echvi_1858 0.58 +1.4 2,175,038 - Echvi_1858 0.58 -0.2 2,175,189 + Echvi_1858 0.63 +0.2 2,175,190 - Echvi_1858 0.63 -0.3 2,175,313 - Echvi_1858 0.67 +1.0 2,175,423 - Echvi_1858 0.70 +0.6 2,175,423 - Echvi_1858 0.70 +0.8 2,175,459 - Echvi_1858 0.72 -0.1 2,175,493 + Echvi_1858 0.73 +0.2 2,175,614 - Echvi_1858 0.77 -0.3 2,175,614 - Echvi_1858 0.77 +0.6 2,175,616 + Echvi_1858 0.77 +1.9 2,175,625 + Echvi_1858 0.77 +0.5 2,175,626 - Echvi_1858 0.77 +0.6 2,175,626 - Echvi_1858 0.77 +0.2 2,175,700 + Echvi_1858 0.79 -1.3 2,175,701 - Echvi_1858 0.79 -0.1 2,175,701 - Echvi_1858 0.79 -1.4 2,175,701 - Echvi_1858 0.79 +0.7 2,175,729 + Echvi_1858 0.80 +0.8 2,175,790 - Echvi_1858 0.82 -0.5 2,175,849 + Echvi_1858 0.84 +0.1 2,175,906 - Echvi_1858 0.86 +0.2 2,175,944 + Echvi_1858 0.87 -0.5 2,175,944 + Echvi_1858 0.87 +2.2 2,175,944 + Echvi_1858 0.87 -0.5 2,175,945 - Echvi_1858 0.87 -1.2 2,175,945 - Echvi_1858 0.87 +2.9 2,175,951 + Echvi_1858 0.87 -1.4 2,176,006 - Echvi_1858 0.89 +0.4 2,176,133 + -0.8 2,176,159 + +1.3 2,176,179 - +1.7 2,176,209 + -0.1 2,176,216 - -0.5 2,176,245 - +0.2 2,176,251 + -0.1 2,176,264 - +0.1 2,176,264 - -0.4 2,176,283 - +0.3 2,176,283 - -0.5 2,176,287 + +0.1 2,176,287 + -0.6 2,176,287 + +1.6 2,176,288 - +1.2 2,176,288 - +1.6 2,176,344 - +0.5 2,176,344 - +1.3 2,176,344 - -2.3 2,176,362 - +0.5 2,176,387 - +0.3 2,176,514 - +1.6 2,176,522 - -0.2 2,176,524 + -1.5 2,176,525 - -2.1
Or see this region's nucleotide sequence