Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1678 and Echvi_1679 are separated by 94 nucleotides Echvi_1679 and Echvi_1680 are separated by 162 nucleotides
Echvi_1678: Echvi_1678 - Predicted dehydrogenases and related proteins, at 1,964,625 to 1,965,722
_1678
Echvi_1679: Echvi_1679 - Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin, at 1,965,817 to 1,966,569
_1679
Echvi_1680: Echvi_1680 - transporter, SSS family, at 1,966,732 to 1,968,318
_1680
Position (kb)
1965
1966
1967 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1964.836 kb on + strand, within Echvi_1678 at 1964.840 kb on + strand, within Echvi_1678 at 1964.840 kb on + strand, within Echvi_1678 at 1964.840 kb on + strand, within Echvi_1678 at 1964.840 kb on + strand, within Echvi_1678 at 1964.840 kb on + strand, within Echvi_1678 at 1964.841 kb on - strand, within Echvi_1678 at 1964.841 kb on - strand, within Echvi_1678 at 1964.841 kb on - strand, within Echvi_1678 at 1964.844 kb on + strand, within Echvi_1678 at 1964.844 kb on + strand, within Echvi_1678 at 1964.844 kb on + strand, within Echvi_1678 at 1964.844 kb on + strand, within Echvi_1678 at 1964.845 kb on - strand, within Echvi_1678 at 1964.845 kb on - strand, within Echvi_1678 at 1964.845 kb on - strand, within Echvi_1678 at 1964.845 kb on - strand, within Echvi_1678 at 1964.845 kb on - strand, within Echvi_1678 at 1964.845 kb on - strand, within Echvi_1678 at 1964.860 kb on + strand, within Echvi_1678 at 1964.860 kb on + strand, within Echvi_1678 at 1964.861 kb on - strand, within Echvi_1678 at 1964.908 kb on + strand, within Echvi_1678 at 1964.909 kb on - strand, within Echvi_1678 at 1964.909 kb on - strand, within Echvi_1678 at 1964.909 kb on - strand, within Echvi_1678 at 1964.979 kb on - strand, within Echvi_1678 at 1964.979 kb on - strand, within Echvi_1678 at 1964.979 kb on - strand, within Echvi_1678 at 1965.045 kb on - strand, within Echvi_1678 at 1965.045 kb on - strand, within Echvi_1678 at 1965.088 kb on - strand, within Echvi_1678 at 1965.088 kb on - strand, within Echvi_1678 at 1965.193 kb on - strand, within Echvi_1678 at 1965.193 kb on - strand, within Echvi_1678 at 1965.193 kb on - strand, within Echvi_1678 at 1965.193 kb on - strand, within Echvi_1678 at 1965.214 kb on + strand, within Echvi_1678 at 1965.285 kb on - strand, within Echvi_1678 at 1965.289 kb on - strand, within Echvi_1678 at 1965.297 kb on - strand, within Echvi_1678 at 1965.377 kb on + strand, within Echvi_1678 at 1965.377 kb on + strand, within Echvi_1678 at 1965.377 kb on + strand, within Echvi_1678 at 1965.414 kb on + strand, within Echvi_1678 at 1965.414 kb on + strand, within Echvi_1678 at 1965.414 kb on + strand, within Echvi_1678 at 1965.415 kb on - strand, within Echvi_1678 at 1965.417 kb on - strand, within Echvi_1678 at 1965.417 kb on - strand, within Echvi_1678 at 1965.443 kb on + strand, within Echvi_1678 at 1965.444 kb on - strand, within Echvi_1678 at 1965.479 kb on + strand, within Echvi_1678 at 1965.479 kb on + strand, within Echvi_1678 at 1965.480 kb on - strand, within Echvi_1678 at 1965.493 kb on - strand, within Echvi_1678 at 1965.493 kb on - strand, within Echvi_1678 at 1965.531 kb on + strand, within Echvi_1678 at 1965.531 kb on + strand, within Echvi_1678 at 1965.537 kb on - strand, within Echvi_1678 at 1965.537 kb on - strand, within Echvi_1678 at 1965.541 kb on - strand, within Echvi_1678 at 1965.563 kb on + strand, within Echvi_1678 at 1965.564 kb on - strand, within Echvi_1678 at 1965.746 kb on + strand at 1965.753 kb on + strand at 1965.753 kb on + strand at 1965.754 kb on - strand at 1965.775 kb on + strand at 1965.906 kb on - strand, within Echvi_1679 at 1965.937 kb on - strand, within Echvi_1679 at 1965.937 kb on - strand, within Echvi_1679 at 1966.028 kb on - strand, within Echvi_1679 at 1966.111 kb on + strand, within Echvi_1679 at 1966.211 kb on - strand, within Echvi_1679 at 1966.276 kb on + strand, within Echvi_1679 at 1966.276 kb on + strand, within Echvi_1679 at 1966.277 kb on - strand, within Echvi_1679 at 1966.340 kb on + strand, within Echvi_1679 at 1966.340 kb on + strand, within Echvi_1679 at 1966.341 kb on - strand, within Echvi_1679 at 1966.346 kb on - strand, within Echvi_1679 at 1966.346 kb on - strand, within Echvi_1679 at 1966.346 kb on - strand, within Echvi_1679 at 1966.346 kb on - strand, within Echvi_1679 at 1966.474 kb on + strand, within Echvi_1679 at 1966.513 kb on + strand at 1966.578 kb on + strand at 1966.578 kb on + strand at 1966.578 kb on + strand at 1966.578 kb on + strand at 1966.584 kb on + strand at 1966.584 kb on + strand at 1966.602 kb on - strand at 1966.602 kb on - strand at 1966.628 kb on + strand at 1966.629 kb on - strand at 1966.636 kb on + strand at 1966.636 kb on + strand at 1966.636 kb on + strand at 1966.636 kb on + strand at 1966.637 kb on - strand at 1966.712 kb on + strand at 1966.712 kb on + strand at 1966.714 kb on - strand at 1966.727 kb on + strand at 1966.749 kb on - strand at 1966.783 kb on + strand at 1966.887 kb on + strand at 1966.888 kb on - strand at 1966.916 kb on + strand, within Echvi_1680 at 1966.916 kb on + strand, within Echvi_1680 at 1966.917 kb on - strand, within Echvi_1680 at 1966.917 kb on - strand, within Echvi_1680 at 1966.917 kb on - strand, within Echvi_1680 at 1966.955 kb on - strand, within Echvi_1680 at 1966.960 kb on - strand, within Echvi_1680 at 1966.960 kb on - strand, within Echvi_1680 at 1966.967 kb on + strand at 1966.968 kb on - strand, within Echvi_1680 at 1966.998 kb on + strand, within Echvi_1680 at 1966.998 kb on + strand, within Echvi_1680 at 1967.004 kb on + strand, within Echvi_1680 at 1967.120 kb on - strand, within Echvi_1680 at 1967.122 kb on - strand, within Echvi_1680 at 1967.122 kb on - strand, within Echvi_1680 at 1967.292 kb on - strand, within Echvi_1680 at 1967.292 kb on - strand, within Echvi_1680 at 1967.347 kb on + strand, within Echvi_1680 at 1967.348 kb on - strand, within Echvi_1680 at 1967.350 kb on - strand, within Echvi_1680 at 1967.350 kb on - strand, within Echvi_1680 at 1967.350 kb on - strand, within Echvi_1680 at 1967.431 kb on + strand, within Echvi_1680
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,964,836 + Echvi_1678 0.19 +1.7 1,964,840 + Echvi_1678 0.20 -0.1 1,964,840 + Echvi_1678 0.20 +0.8 1,964,840 + Echvi_1678 0.20 -1.3 1,964,840 + Echvi_1678 0.20 -2.3 1,964,840 + Echvi_1678 0.20 -0.3 1,964,841 - Echvi_1678 0.20 -1.8 1,964,841 - Echvi_1678 0.20 +0.7 1,964,841 - Echvi_1678 0.20 +1.1 1,964,844 + Echvi_1678 0.20 -0.6 1,964,844 + Echvi_1678 0.20 -1.8 1,964,844 + Echvi_1678 0.20 -0.1 1,964,844 + Echvi_1678 0.20 -0.1 1,964,845 - Echvi_1678 0.20 +0.3 1,964,845 - Echvi_1678 0.20 -1.4 1,964,845 - Echvi_1678 0.20 +0.2 1,964,845 - Echvi_1678 0.20 -0.2 1,964,845 - Echvi_1678 0.20 +0.3 1,964,845 - Echvi_1678 0.20 -0.1 1,964,860 + Echvi_1678 0.21 -0.0 1,964,860 + Echvi_1678 0.21 +1.0 1,964,861 - Echvi_1678 0.21 -0.1 1,964,908 + Echvi_1678 0.26 -0.1 1,964,909 - Echvi_1678 0.26 -0.3 1,964,909 - Echvi_1678 0.26 -1.2 1,964,909 - Echvi_1678 0.26 -1.5 1,964,979 - Echvi_1678 0.32 +0.9 1,964,979 - Echvi_1678 0.32 -1.7 1,964,979 - Echvi_1678 0.32 -0.1 1,965,045 - Echvi_1678 0.38 -0.6 1,965,045 - Echvi_1678 0.38 -1.5 1,965,088 - Echvi_1678 0.42 +0.3 1,965,088 - Echvi_1678 0.42 +2.8 1,965,193 - Echvi_1678 0.52 -0.7 1,965,193 - Echvi_1678 0.52 +0.8 1,965,193 - Echvi_1678 0.52 -1.7 1,965,193 - Echvi_1678 0.52 -2.1 1,965,214 + Echvi_1678 0.54 +0.4 1,965,285 - Echvi_1678 0.60 -0.2 1,965,289 - Echvi_1678 0.60 +0.5 1,965,297 - Echvi_1678 0.61 -0.4 1,965,377 + Echvi_1678 0.68 +0.5 1,965,377 + Echvi_1678 0.68 +0.2 1,965,377 + Echvi_1678 0.68 -1.9 1,965,414 + Echvi_1678 0.72 +0.1 1,965,414 + Echvi_1678 0.72 +0.5 1,965,414 + Echvi_1678 0.72 -0.3 1,965,415 - Echvi_1678 0.72 -2.8 1,965,417 - Echvi_1678 0.72 +1.7 1,965,417 - Echvi_1678 0.72 -2.2 1,965,443 + Echvi_1678 0.74 -1.4 1,965,444 - Echvi_1678 0.75 -1.2 1,965,479 + Echvi_1678 0.78 -0.3 1,965,479 + Echvi_1678 0.78 +0.4 1,965,480 - Echvi_1678 0.78 +0.1 1,965,493 - Echvi_1678 0.79 -1.5 1,965,493 - Echvi_1678 0.79 -0.1 1,965,531 + Echvi_1678 0.83 +0.3 1,965,531 + Echvi_1678 0.83 -0.1 1,965,537 - Echvi_1678 0.83 +0.3 1,965,537 - Echvi_1678 0.83 -0.9 1,965,541 - Echvi_1678 0.83 +1.3 1,965,563 + Echvi_1678 0.85 -0.3 1,965,564 - Echvi_1678 0.86 -0.8 1,965,746 + +0.7 1,965,753 + -0.9 1,965,753 + +0.9 1,965,754 - +0.0 1,965,775 + -0.6 1,965,906 - Echvi_1679 0.12 -1.1 1,965,937 - Echvi_1679 0.16 +0.3 1,965,937 - Echvi_1679 0.16 -0.5 1,966,028 - Echvi_1679 0.28 -1.8 1,966,111 + Echvi_1679 0.39 -0.9 1,966,211 - Echvi_1679 0.52 +0.2 1,966,276 + Echvi_1679 0.61 -0.1 1,966,276 + Echvi_1679 0.61 -2.1 1,966,277 - Echvi_1679 0.61 +1.1 1,966,340 + Echvi_1679 0.69 -1.1 1,966,340 + Echvi_1679 0.69 -0.5 1,966,341 - Echvi_1679 0.70 -2.6 1,966,346 - Echvi_1679 0.70 -0.1 1,966,346 - Echvi_1679 0.70 +1.5 1,966,346 - Echvi_1679 0.70 +1.9 1,966,346 - Echvi_1679 0.70 -2.9 1,966,474 + Echvi_1679 0.87 -1.3 1,966,513 + +1.3 1,966,578 + -1.4 1,966,578 + +0.0 1,966,578 + +0.7 1,966,578 + -0.7 1,966,584 + -0.1 1,966,584 + -1.4 1,966,602 - -1.8 1,966,602 - +0.3 1,966,628 + +0.1 1,966,629 - +2.6 1,966,636 + -1.1 1,966,636 + +1.3 1,966,636 + +0.3 1,966,636 + +0.5 1,966,637 - +2.0 1,966,712 + -0.1 1,966,712 + +0.4 1,966,714 - -1.2 1,966,727 + -0.4 1,966,749 - -3.5 1,966,783 + -2.1 1,966,887 + -0.5 1,966,888 - -0.5 1,966,916 + Echvi_1680 0.12 -0.6 1,966,916 + Echvi_1680 0.12 +0.6 1,966,917 - Echvi_1680 0.12 -1.0 1,966,917 - Echvi_1680 0.12 +0.1 1,966,917 - Echvi_1680 0.12 -2.3 1,966,955 - Echvi_1680 0.14 -0.7 1,966,960 - Echvi_1680 0.14 +0.2 1,966,960 - Echvi_1680 0.14 -0.2 1,966,967 + +1.3 1,966,968 - Echvi_1680 0.15 -0.2 1,966,998 + Echvi_1680 0.17 +0.9 1,966,998 + Echvi_1680 0.17 -0.5 1,967,004 + Echvi_1680 0.17 +0.8 1,967,120 - Echvi_1680 0.24 -0.4 1,967,122 - Echvi_1680 0.25 +0.9 1,967,122 - Echvi_1680 0.25 -1.3 1,967,292 - Echvi_1680 0.35 +1.4 1,967,292 - Echvi_1680 0.35 +1.0 1,967,347 + Echvi_1680 0.39 +1.3 1,967,348 - Echvi_1680 0.39 +0.3 1,967,350 - Echvi_1680 0.39 -0.1 1,967,350 - Echvi_1680 0.39 -1.2 1,967,350 - Echvi_1680 0.39 +2.0 1,967,431 + Echvi_1680 0.44 -0.7
Or see this region's nucleotide sequence