Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1633

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1633 and Echvi_1634 are separated by 213 nucleotidesEchvi_1634 and Echvi_1635 are separated by 201 nucleotides Echvi_1633: Echvi_1633 - Transposase and inactivated derivatives, at 1,887,363 to 1,888,421 _1633 Echvi_1634: Echvi_1634 - hypothetical protein, at 1,888,635 to 1,888,754 _1634 Echvi_1635: Echvi_1635 - TonB-linked outer membrane protein, SusC/RagA family, at 1,888,956 to 1,892,222 _1635 Position (kb) 1887 1888 1889Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1886.413 kb on + strandat 1886.471 kb on + strandat 1886.585 kb on + strandat 1886.732 kb on + strandat 1886.732 kb on + strandat 1886.732 kb on + strandat 1886.732 kb on + strandat 1886.733 kb on - strandat 1886.738 kb on - strandat 1886.784 kb on - strandat 1886.784 kb on - strandat 1886.832 kb on + strandat 1886.832 kb on + strandat 1886.836 kb on + strandat 1886.836 kb on + strandat 1886.837 kb on - strandat 1886.844 kb on + strandat 1886.845 kb on - strandat 1886.845 kb on - strandat 1886.845 kb on - strandat 1886.951 kb on + strandat 1886.975 kb on + strandat 1887.009 kb on - strandat 1887.009 kb on - strandat 1887.030 kb on + strandat 1888.484 kb on + strandat 1888.484 kb on + strandat 1888.484 kb on + strandat 1888.485 kb on - strandat 1888.512 kb on + strandat 1888.512 kb on + strandat 1888.512 kb on + strandat 1888.512 kb on + strandat 1888.527 kb on + strandat 1888.539 kb on + strandat 1888.540 kb on - strandat 1888.543 kb on - strandat 1888.549 kb on + strandat 1888.549 kb on + strandat 1888.549 kb on + strandat 1888.604 kb on + strandat 1888.604 kb on + strandat 1888.811 kb on - strandat 1888.812 kb on + strandat 1888.812 kb on + strandat 1888.813 kb on - strandat 1888.815 kb on + strandat 1888.815 kb on + strandat 1888.821 kb on - strandat 1888.821 kb on - strandat 1888.821 kb on - strandat 1888.952 kb on + strandat 1888.952 kb on + strandat 1888.952 kb on + strandat 1888.953 kb on - strandat 1889.124 kb on - strandat 1889.170 kb on + strandat 1889.174 kb on + strandat 1889.206 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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1,886,413 + -0.3
1,886,471 + -0.9
1,886,585 + -1.6
1,886,732 + -0.7
1,886,732 + -0.5
1,886,732 + +1.2
1,886,732 + -0.0
1,886,733 - -2.4
1,886,738 - +0.1
1,886,784 - -0.4
1,886,784 - -0.8
1,886,832 + +1.0
1,886,832 + +0.1
1,886,836 + +1.0
1,886,836 + -1.4
1,886,837 - +0.5
1,886,844 + +1.5
1,886,845 - -0.4
1,886,845 - -0.5
1,886,845 - +2.3
1,886,951 + -0.9
1,886,975 + +0.4
1,887,009 - -0.1
1,887,009 - +0.2
1,887,030 + -0.1
1,888,484 + +1.1
1,888,484 + -0.3
1,888,484 + +0.1
1,888,485 - -1.0
1,888,512 + +4.9
1,888,512 + -1.3
1,888,512 + +1.2
1,888,512 + +1.7
1,888,527 + +1.6
1,888,539 + +1.7
1,888,540 - -0.6
1,888,543 - -2.0
1,888,549 + -0.4
1,888,549 + -1.4
1,888,549 + -1.0
1,888,604 + -1.5
1,888,604 + -0.4
1,888,811 - +1.1
1,888,812 + -0.3
1,888,812 + -0.7
1,888,813 - +0.4
1,888,815 + +0.3
1,888,815 + +0.2
1,888,821 - -0.3
1,888,821 - -1.5
1,888,821 - +0.6
1,888,952 + +2.2
1,888,952 + +0.2
1,888,952 + +1.0
1,888,953 - -0.2
1,889,124 - -2.4
1,889,170 + -0.3
1,889,174 + -0.3
1,889,206 + +0.6

Or see this region's nucleotide sequence