Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1587 and Echvi_1588 overlap by 4 nucleotides Echvi_1588 and Echvi_1589 are separated by 8 nucleotides Echvi_1589 and Echvi_1590 are separated by 71 nucleotides
Echvi_1587: Echvi_1587 - Saccharopine dehydrogenase (NADP(+), L-lysine-forming) (EC 1.5.1.8); Saccharopine dehydrogenase (NAD(+), L-glutamate-forming) (EC 1.5.1.9) (from data) , at 1,824,832 to 1,826,046
_1587
Echvi_1588: Echvi_1588 - deoxyribose-phosphate aldolase, at 1,826,043 to 1,826,708
_1588
Echvi_1589: Echvi_1589 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,826,717 to 1,827,991
_1589
Echvi_1590: Echvi_1590 - Na+/phosphate symporter, at 1,828,063 to 1,829,262
_1590
Position (kb)
1826
1827
1828 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1825.777 kb on + strand, within Echvi_1587 at 1825.777 kb on + strand, within Echvi_1587 at 1825.777 kb on + strand, within Echvi_1587 at 1825.778 kb on - strand, within Echvi_1587 at 1825.952 kb on + strand at 1825.996 kb on + strand at 1825.996 kb on + strand at 1825.997 kb on - strand at 1826.057 kb on + strand at 1826.058 kb on - strand at 1826.058 kb on - strand at 1826.058 kb on - strand at 1826.058 kb on - strand at 1826.058 kb on - strand at 1826.061 kb on + strand at 1826.062 kb on - strand at 1826.065 kb on + strand at 1826.065 kb on + strand at 1826.136 kb on + strand, within Echvi_1588 at 1826.137 kb on - strand, within Echvi_1588 at 1826.201 kb on + strand, within Echvi_1588 at 1826.202 kb on - strand, within Echvi_1588 at 1826.202 kb on - strand, within Echvi_1588 at 1826.227 kb on + strand, within Echvi_1588 at 1826.245 kb on - strand, within Echvi_1588 at 1826.345 kb on + strand, within Echvi_1588 at 1826.345 kb on + strand, within Echvi_1588 at 1826.433 kb on + strand, within Echvi_1588 at 1826.465 kb on + strand, within Echvi_1588 at 1826.492 kb on + strand, within Echvi_1588 at 1826.602 kb on + strand, within Echvi_1588 at 1826.603 kb on - strand, within Echvi_1588 at 1826.699 kb on - strand at 1826.738 kb on - strand at 1826.744 kb on + strand at 1826.744 kb on + strand at 1826.744 kb on + strand at 1826.797 kb on + strand at 1826.797 kb on + strand at 1826.798 kb on - strand at 1826.798 kb on - strand at 1826.846 kb on - strand, within Echvi_1589 at 1826.846 kb on - strand, within Echvi_1589 at 1826.846 kb on - strand, within Echvi_1589 at 1826.846 kb on - strand, within Echvi_1589 at 1826.846 kb on - strand, within Echvi_1589 at 1826.862 kb on + strand, within Echvi_1589 at 1826.862 kb on + strand, within Echvi_1589 at 1826.862 kb on + strand, within Echvi_1589 at 1826.862 kb on + strand, within Echvi_1589 at 1826.863 kb on - strand, within Echvi_1589 at 1826.863 kb on - strand, within Echvi_1589 at 1826.863 kb on - strand, within Echvi_1589 at 1826.899 kb on + strand, within Echvi_1589 at 1826.910 kb on - strand, within Echvi_1589 at 1826.926 kb on + strand, within Echvi_1589 at 1826.926 kb on + strand, within Echvi_1589 at 1826.961 kb on - strand, within Echvi_1589 at 1826.961 kb on - strand, within Echvi_1589 at 1827.008 kb on - strand, within Echvi_1589 at 1827.044 kb on + strand, within Echvi_1589 at 1827.063 kb on + strand, within Echvi_1589 at 1827.064 kb on - strand, within Echvi_1589 at 1827.068 kb on + strand, within Echvi_1589 at 1827.122 kb on + strand, within Echvi_1589 at 1827.123 kb on - strand, within Echvi_1589 at 1827.213 kb on + strand, within Echvi_1589 at 1827.213 kb on + strand, within Echvi_1589 at 1827.222 kb on + strand, within Echvi_1589 at 1827.222 kb on + strand, within Echvi_1589 at 1827.222 kb on + strand, within Echvi_1589 at 1827.223 kb on - strand, within Echvi_1589 at 1827.223 kb on - strand, within Echvi_1589 at 1827.266 kb on - strand, within Echvi_1589 at 1827.289 kb on - strand, within Echvi_1589 at 1827.289 kb on - strand, within Echvi_1589 at 1827.320 kb on - strand, within Echvi_1589 at 1827.330 kb on - strand, within Echvi_1589 at 1827.354 kb on - strand, within Echvi_1589 at 1827.354 kb on - strand, within Echvi_1589 at 1827.378 kb on + strand, within Echvi_1589 at 1827.387 kb on + strand, within Echvi_1589 at 1827.387 kb on + strand, within Echvi_1589 at 1827.437 kb on - strand, within Echvi_1589 at 1827.452 kb on - strand, within Echvi_1589 at 1827.476 kb on + strand, within Echvi_1589 at 1827.476 kb on + strand, within Echvi_1589 at 1827.477 kb on - strand, within Echvi_1589 at 1827.542 kb on + strand, within Echvi_1589 at 1827.544 kb on + strand, within Echvi_1589 at 1827.545 kb on - strand, within Echvi_1589 at 1827.587 kb on + strand, within Echvi_1589 at 1827.588 kb on - strand, within Echvi_1589 at 1827.641 kb on + strand, within Echvi_1589 at 1827.684 kb on - strand, within Echvi_1589 at 1827.801 kb on + strand, within Echvi_1589 at 1827.802 kb on - strand, within Echvi_1589 at 1827.804 kb on + strand, within Echvi_1589 at 1827.804 kb on + strand, within Echvi_1589 at 1827.804 kb on + strand, within Echvi_1589 at 1827.805 kb on - strand, within Echvi_1589 at 1827.805 kb on - strand, within Echvi_1589 at 1827.805 kb on - strand, within Echvi_1589 at 1827.805 kb on - strand, within Echvi_1589 at 1827.818 kb on + strand, within Echvi_1589 at 1827.847 kb on + strand, within Echvi_1589 at 1827.847 kb on + strand, within Echvi_1589 at 1827.915 kb on + strand at 1828.090 kb on - strand at 1828.208 kb on + strand, within Echvi_1590 at 1828.209 kb on - strand, within Echvi_1590 at 1828.560 kb on + strand, within Echvi_1590 at 1828.560 kb on + strand, within Echvi_1590
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,825,777 + Echvi_1587 0.78 -2.6 1,825,777 + Echvi_1587 0.78 -1.9 1,825,777 + Echvi_1587 0.78 +0.7 1,825,778 - Echvi_1587 0.78 -1.7 1,825,952 + +0.1 1,825,996 + -0.2 1,825,996 + +0.7 1,825,997 - -0.1 1,826,057 + -2.1 1,826,058 - -0.3 1,826,058 - -0.3 1,826,058 - -2.6 1,826,058 - -0.6 1,826,058 - +3.2 1,826,061 + +0.1 1,826,062 - -0.1 1,826,065 + -1.4 1,826,065 + -0.0 1,826,136 + Echvi_1588 0.14 -0.2 1,826,137 - Echvi_1588 0.14 +2.3 1,826,201 + Echvi_1588 0.24 +0.9 1,826,202 - Echvi_1588 0.24 -1.6 1,826,202 - Echvi_1588 0.24 +1.0 1,826,227 + Echvi_1588 0.28 -2.1 1,826,245 - Echvi_1588 0.30 +1.8 1,826,345 + Echvi_1588 0.45 -2.8 1,826,345 + Echvi_1588 0.45 -1.8 1,826,433 + Echvi_1588 0.59 +1.9 1,826,465 + Echvi_1588 0.63 -0.7 1,826,492 + Echvi_1588 0.67 -0.3 1,826,602 + Echvi_1588 0.84 -1.3 1,826,603 - Echvi_1588 0.84 -1.9 1,826,699 - -0.8 1,826,738 - -1.4 1,826,744 + +1.3 1,826,744 + +1.5 1,826,744 + -2.1 1,826,797 + +0.3 1,826,797 + -1.7 1,826,798 - +0.3 1,826,798 - -1.0 1,826,846 - Echvi_1589 0.10 -1.0 1,826,846 - Echvi_1589 0.10 +0.4 1,826,846 - Echvi_1589 0.10 +0.3 1,826,846 - Echvi_1589 0.10 -0.7 1,826,846 - Echvi_1589 0.10 -1.7 1,826,862 + Echvi_1589 0.11 +0.4 1,826,862 + Echvi_1589 0.11 -1.0 1,826,862 + Echvi_1589 0.11 -1.6 1,826,862 + Echvi_1589 0.11 -0.0 1,826,863 - Echvi_1589 0.11 +0.9 1,826,863 - Echvi_1589 0.11 -0.5 1,826,863 - Echvi_1589 0.11 -1.8 1,826,899 + Echvi_1589 0.14 +0.5 1,826,910 - Echvi_1589 0.15 -0.5 1,826,926 + Echvi_1589 0.16 -1.8 1,826,926 + Echvi_1589 0.16 -0.3 1,826,961 - Echvi_1589 0.19 +0.4 1,826,961 - Echvi_1589 0.19 +0.5 1,827,008 - Echvi_1589 0.23 -2.7 1,827,044 + Echvi_1589 0.26 +1.1 1,827,063 + Echvi_1589 0.27 -1.9 1,827,064 - Echvi_1589 0.27 +0.2 1,827,068 + Echvi_1589 0.28 +1.7 1,827,122 + Echvi_1589 0.32 -1.1 1,827,123 - Echvi_1589 0.32 -0.3 1,827,213 + Echvi_1589 0.39 -0.8 1,827,213 + Echvi_1589 0.39 -1.5 1,827,222 + Echvi_1589 0.40 +0.6 1,827,222 + Echvi_1589 0.40 +2.1 1,827,222 + Echvi_1589 0.40 +0.9 1,827,223 - Echvi_1589 0.40 -0.7 1,827,223 - Echvi_1589 0.40 -1.7 1,827,266 - Echvi_1589 0.43 +0.0 1,827,289 - Echvi_1589 0.45 +0.3 1,827,289 - Echvi_1589 0.45 -1.1 1,827,320 - Echvi_1589 0.47 +1.5 1,827,330 - Echvi_1589 0.48 -0.9 1,827,354 - Echvi_1589 0.50 +0.8 1,827,354 - Echvi_1589 0.50 -1.2 1,827,378 + Echvi_1589 0.52 +0.9 1,827,387 + Echvi_1589 0.53 +0.4 1,827,387 + Echvi_1589 0.53 -2.1 1,827,437 - Echvi_1589 0.56 -0.4 1,827,452 - Echvi_1589 0.58 -2.6 1,827,476 + Echvi_1589 0.60 -1.0 1,827,476 + Echvi_1589 0.60 -2.3 1,827,477 - Echvi_1589 0.60 +0.6 1,827,542 + Echvi_1589 0.65 -2.2 1,827,544 + Echvi_1589 0.65 +0.3 1,827,545 - Echvi_1589 0.65 -0.7 1,827,587 + Echvi_1589 0.68 -1.6 1,827,588 - Echvi_1589 0.68 -1.4 1,827,641 + Echvi_1589 0.72 +1.0 1,827,684 - Echvi_1589 0.76 +0.7 1,827,801 + Echvi_1589 0.85 -3.1 1,827,802 - Echvi_1589 0.85 +1.9 1,827,804 + Echvi_1589 0.85 -0.8 1,827,804 + Echvi_1589 0.85 -1.3 1,827,804 + Echvi_1589 0.85 -2.3 1,827,805 - Echvi_1589 0.85 -1.6 1,827,805 - Echvi_1589 0.85 -0.4 1,827,805 - Echvi_1589 0.85 -0.8 1,827,805 - Echvi_1589 0.85 -0.3 1,827,818 + Echvi_1589 0.86 -2.1 1,827,847 + Echvi_1589 0.89 +1.5 1,827,847 + Echvi_1589 0.89 +0.7 1,827,915 + +0.3 1,828,090 - -1.0 1,828,208 + Echvi_1590 0.12 +1.7 1,828,209 - Echvi_1590 0.12 +1.6 1,828,560 + Echvi_1590 0.41 -0.8 1,828,560 + Echvi_1590 0.41 +0.3
Or see this region's nucleotide sequence