Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1573 and Echvi_1574 are separated by 242 nucleotides Echvi_1574 and Echvi_1575 are separated by 181 nucleotides Echvi_1575 and Echvi_1576 are separated by 133 nucleotides
Echvi_1573: Echvi_1573 - L-rhamnose isomerase (EC 5.3.1.14) (from data) , at 1,808,709 to 1,809,992
_1573
Echvi_1574: Echvi_1574 - Rhamnulokinase (EC 2.7.1.5) (from data) , at 1,810,235 to 1,811,581
_1574
Echvi_1575: Echvi_1575 - Transposase and inactivated derivatives, at 1,811,763 to 1,812,317
_1575
Echvi_1576: Echvi_1576 - Predicted dehydrogenases and related proteins, at 1,812,451 to 1,813,824
_1576
Position (kb)
1810
1811
1812 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1809.279 kb on - strand, within Echvi_1573 at 1809.322 kb on - strand, within Echvi_1573 at 1809.322 kb on - strand, within Echvi_1573 at 1809.360 kb on + strand, within Echvi_1573 at 1809.370 kb on - strand, within Echvi_1573 at 1809.385 kb on - strand, within Echvi_1573 at 1809.398 kb on - strand, within Echvi_1573 at 1809.398 kb on - strand, within Echvi_1573 at 1809.431 kb on + strand, within Echvi_1573 at 1809.452 kb on + strand, within Echvi_1573 at 1809.452 kb on + strand, within Echvi_1573 at 1809.452 kb on + strand, within Echvi_1573 at 1809.453 kb on - strand, within Echvi_1573 at 1809.492 kb on - strand, within Echvi_1573 at 1809.584 kb on - strand, within Echvi_1573 at 1809.601 kb on - strand at 1809.701 kb on + strand, within Echvi_1573 at 1809.702 kb on - strand, within Echvi_1573 at 1809.806 kb on + strand, within Echvi_1573 at 1809.806 kb on + strand, within Echvi_1573 at 1810.102 kb on + strand at 1810.102 kb on + strand at 1810.103 kb on - strand at 1810.103 kb on - strand at 1810.104 kb on + strand at 1810.105 kb on - strand at 1810.105 kb on - strand at 1810.105 kb on - strand at 1810.143 kb on + strand at 1810.191 kb on + strand at 1810.222 kb on + strand at 1810.222 kb on + strand at 1810.270 kb on - strand at 1810.309 kb on + strand at 1810.310 kb on - strand at 1810.332 kb on - strand at 1810.405 kb on + strand, within Echvi_1574 at 1810.416 kb on + strand, within Echvi_1574 at 1810.416 kb on + strand, within Echvi_1574 at 1810.443 kb on - strand, within Echvi_1574 at 1810.472 kb on + strand, within Echvi_1574 at 1810.473 kb on - strand, within Echvi_1574 at 1810.473 kb on - strand, within Echvi_1574 at 1810.489 kb on - strand, within Echvi_1574 at 1810.489 kb on - strand, within Echvi_1574 at 1810.492 kb on + strand, within Echvi_1574 at 1810.492 kb on + strand, within Echvi_1574 at 1810.492 kb on + strand, within Echvi_1574 at 1810.493 kb on - strand, within Echvi_1574 at 1810.493 kb on - strand, within Echvi_1574 at 1810.493 kb on - strand, within Echvi_1574 at 1810.527 kb on - strand, within Echvi_1574 at 1810.527 kb on - strand, within Echvi_1574 at 1810.529 kb on - strand, within Echvi_1574 at 1810.718 kb on + strand, within Echvi_1574 at 1810.719 kb on - strand, within Echvi_1574 at 1810.735 kb on + strand, within Echvi_1574 at 1810.778 kb on - strand, within Echvi_1574 at 1810.808 kb on + strand, within Echvi_1574 at 1810.808 kb on + strand, within Echvi_1574 at 1810.860 kb on + strand, within Echvi_1574 at 1810.877 kb on + strand, within Echvi_1574 at 1810.878 kb on - strand, within Echvi_1574 at 1810.878 kb on - strand, within Echvi_1574 at 1810.952 kb on + strand, within Echvi_1574 at 1810.990 kb on + strand, within Echvi_1574 at 1810.997 kb on - strand, within Echvi_1574 at 1811.131 kb on + strand, within Echvi_1574 at 1811.131 kb on + strand, within Echvi_1574 at 1811.132 kb on - strand, within Echvi_1574 at 1811.132 kb on - strand, within Echvi_1574 at 1811.132 kb on - strand, within Echvi_1574 at 1811.132 kb on - strand, within Echvi_1574 at 1811.135 kb on + strand, within Echvi_1574 at 1811.136 kb on - strand, within Echvi_1574 at 1811.238 kb on + strand, within Echvi_1574 at 1811.239 kb on - strand, within Echvi_1574 at 1811.239 kb on - strand, within Echvi_1574 at 1811.239 kb on - strand, within Echvi_1574 at 1811.263 kb on + strand, within Echvi_1574 at 1811.263 kb on + strand, within Echvi_1574 at 1811.263 kb on + strand, within Echvi_1574 at 1811.263 kb on + strand, within Echvi_1574 at 1811.263 kb on + strand, within Echvi_1574 at 1811.264 kb on - strand, within Echvi_1574 at 1811.264 kb on - strand, within Echvi_1574 at 1811.264 kb on - strand, within Echvi_1574 at 1811.264 kb on - strand, within Echvi_1574 at 1811.345 kb on + strand, within Echvi_1574 at 1811.432 kb on - strand, within Echvi_1574 at 1811.464 kb on + strand at 1811.476 kb on - strand at 1811.476 kb on - strand at 1811.480 kb on + strand at 1811.481 kb on - strand at 1811.481 kb on - strand at 1811.481 kb on - strand at 1811.484 kb on - strand at 1811.484 kb on - strand at 1811.580 kb on - strand at 1811.600 kb on - strand at 1811.603 kb on + strand at 1811.604 kb on - strand at 1811.640 kb on + strand at 1811.703 kb on - strand at 1811.739 kb on + strand at 1811.739 kb on + strand at 1811.750 kb on - strand at 1811.824 kb on + strand, within Echvi_1575 at 1811.824 kb on + strand, within Echvi_1575 at 1811.824 kb on + strand, within Echvi_1575 at 1811.825 kb on - strand, within Echvi_1575 at 1811.865 kb on - strand, within Echvi_1575 at 1811.865 kb on - strand, within Echvi_1575 at 1811.901 kb on - strand, within Echvi_1575 at 1811.917 kb on - strand, within Echvi_1575 at 1811.917 kb on - strand, within Echvi_1575 at 1811.917 kb on - strand, within Echvi_1575 at 1812.035 kb on + strand, within Echvi_1575 at 1812.048 kb on - strand, within Echvi_1575 at 1812.143 kb on + strand, within Echvi_1575 at 1812.143 kb on + strand, within Echvi_1575 at 1812.144 kb on - strand, within Echvi_1575 at 1812.144 kb on - strand, within Echvi_1575 at 1812.195 kb on + strand, within Echvi_1575 at 1812.196 kb on - strand, within Echvi_1575 at 1812.196 kb on - strand, within Echvi_1575 at 1812.196 kb on - strand, within Echvi_1575 at 1812.198 kb on - strand, within Echvi_1575 at 1812.229 kb on + strand, within Echvi_1575 at 1812.229 kb on + strand, within Echvi_1575 at 1812.229 kb on + strand, within Echvi_1575 at 1812.230 kb on - strand, within Echvi_1575 at 1812.230 kb on - strand, within Echvi_1575 at 1812.230 kb on - strand, within Echvi_1575 at 1812.246 kb on + strand, within Echvi_1575 at 1812.246 kb on + strand, within Echvi_1575 at 1812.246 kb on + strand, within Echvi_1575 at 1812.246 kb on + strand, within Echvi_1575 at 1812.246 kb on + strand, within Echvi_1575 at 1812.246 kb on + strand, within Echvi_1575 at 1812.247 kb on - strand, within Echvi_1575 at 1812.247 kb on - strand, within Echvi_1575 at 1812.247 kb on - strand, within Echvi_1575 at 1812.247 kb on - strand, within Echvi_1575 at 1812.250 kb on + strand, within Echvi_1575 at 1812.250 kb on + strand, within Echvi_1575 at 1812.250 kb on + strand, within Echvi_1575 at 1812.250 kb on + strand, within Echvi_1575 at 1812.251 kb on - strand, within Echvi_1575 at 1812.251 kb on - strand, within Echvi_1575 at 1812.251 kb on - strand, within Echvi_1575 at 1812.252 kb on + strand, within Echvi_1575 at 1812.252 kb on + strand, within Echvi_1575 at 1812.253 kb on - strand, within Echvi_1575 at 1812.254 kb on + strand, within Echvi_1575 at 1812.254 kb on + strand, within Echvi_1575 at 1812.254 kb on + strand, within Echvi_1575 at 1812.254 kb on + strand, within Echvi_1575 at 1812.255 kb on - strand, within Echvi_1575 at 1812.255 kb on - strand, within Echvi_1575 at 1812.255 kb on - strand, within Echvi_1575 at 1812.271 kb on - strand at 1812.287 kb on + strand at 1812.287 kb on + strand at 1812.288 kb on - strand at 1812.336 kb on + strand at 1812.336 kb on + strand at 1812.337 kb on - strand at 1812.341 kb on - strand at 1812.369 kb on + strand at 1812.392 kb on + strand at 1812.392 kb on + strand at 1812.392 kb on + strand at 1812.393 kb on - strand at 1812.422 kb on + strand at 1812.423 kb on - strand at 1812.424 kb on + strand at 1812.434 kb on + strand at 1812.435 kb on - strand at 1812.480 kb on + strand at 1812.550 kb on + strand at 1812.551 kb on - strand at 1812.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,809,279 - Echvi_1573 0.44 -1.0 1,809,322 - Echvi_1573 0.48 -0.2 1,809,322 - Echvi_1573 0.48 +0.0 1,809,360 + Echvi_1573 0.51 -1.0 1,809,370 - Echvi_1573 0.51 -3.2 1,809,385 - Echvi_1573 0.53 -1.4 1,809,398 - Echvi_1573 0.54 +0.2 1,809,398 - Echvi_1573 0.54 -2.0 1,809,431 + Echvi_1573 0.56 -0.3 1,809,452 + Echvi_1573 0.58 -0.7 1,809,452 + Echvi_1573 0.58 -0.7 1,809,452 + Echvi_1573 0.58 -0.8 1,809,453 - Echvi_1573 0.58 -0.6 1,809,492 - Echvi_1573 0.61 +0.5 1,809,584 - Echvi_1573 0.68 +0.8 1,809,601 - +0.3 1,809,701 + Echvi_1573 0.77 +1.0 1,809,702 - Echvi_1573 0.77 -0.3 1,809,806 + Echvi_1573 0.85 -1.7 1,809,806 + Echvi_1573 0.85 -1.8 1,810,102 + -2.5 1,810,102 + -0.5 1,810,103 - +0.5 1,810,103 - +0.0 1,810,104 + -0.1 1,810,105 - +0.3 1,810,105 - -2.4 1,810,105 - +1.0 1,810,143 + +0.9 1,810,191 + +1.1 1,810,222 + +0.6 1,810,222 + -0.4 1,810,270 - +0.6 1,810,309 + -0.0 1,810,310 - -1.8 1,810,332 - +1.2 1,810,405 + Echvi_1574 0.13 +0.1 1,810,416 + Echvi_1574 0.13 -1.8 1,810,416 + Echvi_1574 0.13 -0.2 1,810,443 - Echvi_1574 0.15 -1.2 1,810,472 + Echvi_1574 0.18 -1.5 1,810,473 - Echvi_1574 0.18 +0.4 1,810,473 - Echvi_1574 0.18 +0.1 1,810,489 - Echvi_1574 0.19 +1.5 1,810,489 - Echvi_1574 0.19 -2.5 1,810,492 + Echvi_1574 0.19 +0.3 1,810,492 + Echvi_1574 0.19 +0.4 1,810,492 + Echvi_1574 0.19 -1.3 1,810,493 - Echvi_1574 0.19 +0.2 1,810,493 - Echvi_1574 0.19 +0.7 1,810,493 - Echvi_1574 0.19 -0.7 1,810,527 - Echvi_1574 0.22 +0.0 1,810,527 - Echvi_1574 0.22 -0.3 1,810,529 - Echvi_1574 0.22 -2.6 1,810,718 + Echvi_1574 0.36 -0.0 1,810,719 - Echvi_1574 0.36 +0.0 1,810,735 + Echvi_1574 0.37 +1.6 1,810,778 - Echvi_1574 0.40 -1.1 1,810,808 + Echvi_1574 0.43 -1.9 1,810,808 + Echvi_1574 0.43 -0.9 1,810,860 + Echvi_1574 0.46 +1.4 1,810,877 + Echvi_1574 0.48 +0.0 1,810,878 - Echvi_1574 0.48 -0.3 1,810,878 - Echvi_1574 0.48 -0.4 1,810,952 + Echvi_1574 0.53 -0.4 1,810,990 + Echvi_1574 0.56 +1.1 1,810,997 - Echvi_1574 0.57 -0.1 1,811,131 + Echvi_1574 0.67 -0.5 1,811,131 + Echvi_1574 0.67 -1.4 1,811,132 - Echvi_1574 0.67 +0.6 1,811,132 - Echvi_1574 0.67 +2.8 1,811,132 - Echvi_1574 0.67 -0.5 1,811,132 - Echvi_1574 0.67 +0.6 1,811,135 + Echvi_1574 0.67 -1.1 1,811,136 - Echvi_1574 0.67 -0.9 1,811,238 + Echvi_1574 0.74 -1.3 1,811,239 - Echvi_1574 0.75 -1.7 1,811,239 - Echvi_1574 0.75 -0.6 1,811,239 - Echvi_1574 0.75 -0.9 1,811,263 + Echvi_1574 0.76 +1.3 1,811,263 + Echvi_1574 0.76 -0.3 1,811,263 + Echvi_1574 0.76 -2.1 1,811,263 + Echvi_1574 0.76 -1.5 1,811,263 + Echvi_1574 0.76 +0.8 1,811,264 - Echvi_1574 0.76 +0.6 1,811,264 - Echvi_1574 0.76 +0.2 1,811,264 - Echvi_1574 0.76 -0.1 1,811,264 - Echvi_1574 0.76 -2.4 1,811,345 + Echvi_1574 0.82 -1.3 1,811,432 - Echvi_1574 0.89 -2.3 1,811,464 + -0.4 1,811,476 - -0.4 1,811,476 - -2.0 1,811,480 + -0.7 1,811,481 - -0.1 1,811,481 - +1.5 1,811,481 - -0.5 1,811,484 - +1.3 1,811,484 - -0.3 1,811,580 - -1.5 1,811,600 - +1.2 1,811,603 + -1.0 1,811,604 - -0.5 1,811,640 + +1.1 1,811,703 - -1.6 1,811,739 + +0.1 1,811,739 + +0.6 1,811,750 - -0.3 1,811,824 + Echvi_1575 0.11 -1.5 1,811,824 + Echvi_1575 0.11 +1.0 1,811,824 + Echvi_1575 0.11 -0.3 1,811,825 - Echvi_1575 0.11 +1.3 1,811,865 - Echvi_1575 0.18 -0.0 1,811,865 - Echvi_1575 0.18 +1.0 1,811,901 - Echvi_1575 0.25 -1.3 1,811,917 - Echvi_1575 0.28 -0.3 1,811,917 - Echvi_1575 0.28 +1.6 1,811,917 - Echvi_1575 0.28 +0.3 1,812,035 + Echvi_1575 0.49 +0.7 1,812,048 - Echvi_1575 0.51 -0.4 1,812,143 + Echvi_1575 0.68 -0.1 1,812,143 + Echvi_1575 0.68 +1.9 1,812,144 - Echvi_1575 0.69 -2.1 1,812,144 - Echvi_1575 0.69 -0.2 1,812,195 + Echvi_1575 0.78 +0.8 1,812,196 - Echvi_1575 0.78 -2.1 1,812,196 - Echvi_1575 0.78 -0.7 1,812,196 - Echvi_1575 0.78 +0.7 1,812,198 - Echvi_1575 0.78 +0.3 1,812,229 + Echvi_1575 0.84 +0.2 1,812,229 + Echvi_1575 0.84 +1.1 1,812,229 + Echvi_1575 0.84 +0.6 1,812,230 - Echvi_1575 0.84 -0.3 1,812,230 - Echvi_1575 0.84 +0.5 1,812,230 - Echvi_1575 0.84 +2.1 1,812,246 + Echvi_1575 0.87 -2.0 1,812,246 + Echvi_1575 0.87 -2.4 1,812,246 + Echvi_1575 0.87 -2.6 1,812,246 + Echvi_1575 0.87 +1.3 1,812,246 + Echvi_1575 0.87 -2.2 1,812,246 + Echvi_1575 0.87 +0.1 1,812,247 - Echvi_1575 0.87 -0.8 1,812,247 - Echvi_1575 0.87 -1.8 1,812,247 - Echvi_1575 0.87 +1.0 1,812,247 - Echvi_1575 0.87 -0.1 1,812,250 + Echvi_1575 0.88 -0.8 1,812,250 + Echvi_1575 0.88 -1.0 1,812,250 + Echvi_1575 0.88 -0.2 1,812,250 + Echvi_1575 0.88 -0.3 1,812,251 - Echvi_1575 0.88 +0.4 1,812,251 - Echvi_1575 0.88 +0.7 1,812,251 - Echvi_1575 0.88 -0.1 1,812,252 + Echvi_1575 0.88 -0.2 1,812,252 + Echvi_1575 0.88 -0.3 1,812,253 - Echvi_1575 0.88 -1.0 1,812,254 + Echvi_1575 0.88 +0.3 1,812,254 + Echvi_1575 0.88 +1.8 1,812,254 + Echvi_1575 0.88 -1.8 1,812,254 + Echvi_1575 0.88 -2.2 1,812,255 - Echvi_1575 0.89 +1.7 1,812,255 - Echvi_1575 0.89 +1.7 1,812,255 - Echvi_1575 0.89 +1.1 1,812,271 - -0.4 1,812,287 + -1.9 1,812,287 + -0.7 1,812,288 - -0.2 1,812,336 + +2.0 1,812,336 + -2.0 1,812,337 - +0.4 1,812,341 - -0.5 1,812,369 + +1.2 1,812,392 + -0.3 1,812,392 + +0.2 1,812,392 + +0.9 1,812,393 - +0.3 1,812,422 + +1.1 1,812,423 - +0.8 1,812,424 + -0.8 1,812,434 + -1.1 1,812,435 - -0.9 1,812,480 + -0.3 1,812,550 + -0.4 1,812,551 - -2.6 1,812,555 + +0.6
Or see this region's nucleotide sequence