Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1503

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1501 and Echvi_1502 are separated by 74 nucleotidesEchvi_1502 and Echvi_1503 are separated by 75 nucleotidesEchvi_1503 and Echvi_1504 are separated by 1 nucleotides Echvi_1501: Echvi_1501 - Predicted transcriptional regulators, at 1,725,005 to 1,725,622 _1501 Echvi_1502: Echvi_1502 - Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog), at 1,725,697 to 1,726,197 _1502 Echvi_1503: Echvi_1503 - Uncharacterized conserved protein, at 1,726,273 to 1,726,755 _1503 Echvi_1504: Echvi_1504 - Uncharacterized protein related to deoxyribodipyrimidine photolyase, at 1,726,757 to 1,728,241 _1504 Position (kb) 1726 1727Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1725.304 kb on - strand, within Echvi_1501at 1725.310 kb on - strand, within Echvi_1501at 1725.310 kb on - strand, within Echvi_1501at 1725.314 kb on + strand, within Echvi_1501at 1725.315 kb on - strand, within Echvi_1501at 1725.315 kb on - strand, within Echvi_1501at 1725.315 kb on - strand, within Echvi_1501at 1725.315 kb on - strand, within Echvi_1501at 1725.316 kb on + strand, within Echvi_1501at 1725.316 kb on + strand, within Echvi_1501at 1725.393 kb on + strand, within Echvi_1501at 1725.490 kb on + strand, within Echvi_1501at 1725.491 kb on - strand, within Echvi_1501at 1725.519 kb on + strand, within Echvi_1501at 1725.521 kb on + strand, within Echvi_1501at 1725.521 kb on + strand, within Echvi_1501at 1725.521 kb on + strand, within Echvi_1501at 1725.521 kb on + strand, within Echvi_1501at 1725.522 kb on - strand, within Echvi_1501at 1725.527 kb on + strand, within Echvi_1501at 1725.527 kb on + strand, within Echvi_1501at 1725.528 kb on - strand, within Echvi_1501at 1725.528 kb on - strand, within Echvi_1501at 1725.529 kb on + strand, within Echvi_1501at 1725.543 kb on + strand, within Echvi_1501at 1725.559 kb on + strand, within Echvi_1501at 1725.559 kb on + strand, within Echvi_1501at 1725.560 kb on - strand, within Echvi_1501at 1725.565 kb on - strandat 1725.588 kb on - strandat 1725.617 kb on - strandat 1725.677 kb on + strandat 1725.683 kb on + strandat 1725.849 kb on + strand, within Echvi_1502at 1725.893 kb on - strand, within Echvi_1502at 1725.893 kb on - strand, within Echvi_1502at 1725.893 kb on - strand, within Echvi_1502at 1725.917 kb on - strand, within Echvi_1502at 1725.972 kb on + strand, within Echvi_1502at 1726.009 kb on - strand, within Echvi_1502at 1726.121 kb on - strand, within Echvi_1502at 1726.125 kb on - strand, within Echvi_1502at 1726.136 kb on - strand, within Echvi_1502at 1726.191 kb on + strandat 1726.191 kb on + strandat 1726.192 kb on - strandat 1726.261 kb on + strandat 1726.268 kb on + strandat 1726.269 kb on - strandat 1726.269 kb on - strandat 1726.282 kb on + strandat 1726.283 kb on - strandat 1726.283 kb on - strandat 1726.368 kb on + strand, within Echvi_1503at 1726.369 kb on - strand, within Echvi_1503at 1726.396 kb on - strand, within Echvi_1503at 1726.494 kb on + strand, within Echvi_1503at 1726.494 kb on + strand, within Echvi_1503at 1726.618 kb on + strand, within Echvi_1503at 1726.618 kb on + strand, within Echvi_1503at 1726.618 kb on + strand, within Echvi_1503at 1726.618 kb on + strand, within Echvi_1503at 1726.618 kb on + strand, within Echvi_1503at 1726.619 kb on - strand, within Echvi_1503at 1726.619 kb on - strand, within Echvi_1503at 1726.743 kb on + strandat 1726.743 kb on + strandat 1726.753 kb on + strandat 1726.843 kb on - strandat 1726.870 kb on + strandat 1726.871 kb on - strandat 1726.909 kb on + strand, within Echvi_1504at 1726.909 kb on + strand, within Echvi_1504at 1726.909 kb on + strand, within Echvi_1504at 1726.909 kb on + strand, within Echvi_1504at 1726.910 kb on - strand, within Echvi_1504at 1726.910 kb on - strand, within Echvi_1504at 1726.910 kb on - strand, within Echvi_1504at 1726.910 kb on - strand, within Echvi_1504at 1726.919 kb on + strand, within Echvi_1504at 1726.919 kb on + strand, within Echvi_1504at 1726.919 kb on + strand, within Echvi_1504at 1726.919 kb on + strand, within Echvi_1504at 1726.920 kb on - strand, within Echvi_1504at 1726.953 kb on + strand, within Echvi_1504at 1726.953 kb on + strand, within Echvi_1504at 1726.958 kb on + strand, within Echvi_1504at 1726.958 kb on + strand, within Echvi_1504at 1726.959 kb on - strand, within Echvi_1504at 1727.134 kb on + strand, within Echvi_1504at 1727.177 kb on + strand, within Echvi_1504at 1727.177 kb on + strand, within Echvi_1504at 1727.360 kb on + strand, within Echvi_1504at 1727.687 kb on + strand, within Echvi_1504

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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1,725,304 - Echvi_1501 0.48 -0.4
1,725,310 - Echvi_1501 0.49 +0.5
1,725,310 - Echvi_1501 0.49 -0.9
1,725,314 + Echvi_1501 0.50 +0.0
1,725,315 - Echvi_1501 0.50 -0.6
1,725,315 - Echvi_1501 0.50 -0.6
1,725,315 - Echvi_1501 0.50 +0.1
1,725,315 - Echvi_1501 0.50 +0.8
1,725,316 + Echvi_1501 0.50 -0.3
1,725,316 + Echvi_1501 0.50 -1.0
1,725,393 + Echvi_1501 0.63 +0.3
1,725,490 + Echvi_1501 0.78 -0.7
1,725,491 - Echvi_1501 0.79 +1.2
1,725,519 + Echvi_1501 0.83 +1.5
1,725,521 + Echvi_1501 0.83 -2.3
1,725,521 + Echvi_1501 0.83 +1.0
1,725,521 + Echvi_1501 0.83 +0.1
1,725,521 + Echvi_1501 0.83 -0.6
1,725,522 - Echvi_1501 0.84 +0.7
1,725,527 + Echvi_1501 0.84 +0.2
1,725,527 + Echvi_1501 0.84 +1.1
1,725,528 - Echvi_1501 0.85 +0.1
1,725,528 - Echvi_1501 0.85 -1.9
1,725,529 + Echvi_1501 0.85 -0.0
1,725,543 + Echvi_1501 0.87 +0.8
1,725,559 + Echvi_1501 0.90 -0.1
1,725,559 + Echvi_1501 0.90 -0.2
1,725,560 - Echvi_1501 0.90 +0.5
1,725,565 - -1.7
1,725,588 - +0.6
1,725,617 - +0.0
1,725,677 + -0.8
1,725,683 + -1.3
1,725,849 + Echvi_1502 0.30 -1.1
1,725,893 - Echvi_1502 0.39 -2.4
1,725,893 - Echvi_1502 0.39 -1.7
1,725,893 - Echvi_1502 0.39 -0.9
1,725,917 - Echvi_1502 0.44 +0.3
1,725,972 + Echvi_1502 0.55 -0.8
1,726,009 - Echvi_1502 0.62 +0.4
1,726,121 - Echvi_1502 0.85 -1.2
1,726,125 - Echvi_1502 0.85 +0.8
1,726,136 - Echvi_1502 0.88 +0.3
1,726,191 + +0.8
1,726,191 + +0.8
1,726,192 - +0.5
1,726,261 + -1.7
1,726,268 + +0.0
1,726,269 - -1.2
1,726,269 - +0.3
1,726,282 + -0.8
1,726,283 - -0.9
1,726,283 - +0.4
1,726,368 + Echvi_1503 0.20 -2.4
1,726,369 - Echvi_1503 0.20 -1.4
1,726,396 - Echvi_1503 0.25 +0.5
1,726,494 + Echvi_1503 0.46 +0.9
1,726,494 + Echvi_1503 0.46 -1.6
1,726,618 + Echvi_1503 0.71 -2.1
1,726,618 + Echvi_1503 0.71 -0.5
1,726,618 + Echvi_1503 0.71 -0.8
1,726,618 + Echvi_1503 0.71 -1.9
1,726,618 + Echvi_1503 0.71 -0.6
1,726,619 - Echvi_1503 0.72 -0.9
1,726,619 - Echvi_1503 0.72 -1.0
1,726,743 + -0.4
1,726,743 + +1.6
1,726,753 + -1.0
1,726,843 - +0.7
1,726,870 + +0.8
1,726,871 - +0.0
1,726,909 + Echvi_1504 0.10 -2.2
1,726,909 + Echvi_1504 0.10 +0.1
1,726,909 + Echvi_1504 0.10 -0.6
1,726,909 + Echvi_1504 0.10 +0.1
1,726,910 - Echvi_1504 0.10 +1.5
1,726,910 - Echvi_1504 0.10 -0.5
1,726,910 - Echvi_1504 0.10 +1.9
1,726,910 - Echvi_1504 0.10 -2.1
1,726,919 + Echvi_1504 0.11 +1.3
1,726,919 + Echvi_1504 0.11 +1.2
1,726,919 + Echvi_1504 0.11 -1.5
1,726,919 + Echvi_1504 0.11 -0.8
1,726,920 - Echvi_1504 0.11 +0.1
1,726,953 + Echvi_1504 0.13 -1.3
1,726,953 + Echvi_1504 0.13 -2.2
1,726,958 + Echvi_1504 0.14 -2.5
1,726,958 + Echvi_1504 0.14 -1.7
1,726,959 - Echvi_1504 0.14 +0.2
1,727,134 + Echvi_1504 0.25 -0.8
1,727,177 + Echvi_1504 0.28 -1.8
1,727,177 + Echvi_1504 0.28 -0.8
1,727,360 + Echvi_1504 0.41 +3.2
1,727,687 + Echvi_1504 0.63 +0.3

Or see this region's nucleotide sequence