Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1314

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1312 and Echvi_1313 are separated by 257 nucleotidesEchvi_1313 and Echvi_1314 overlap by 24 nucleotidesEchvi_1314 and Echvi_1315 are separated by 2 nucleotides Echvi_1312: Echvi_1312 - transcription-repair coupling factor (mfd), at 1,512,685 to 1,516,035 _1312 Echvi_1313: Echvi_1313 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 1,516,293 to 1,516,940 _1313 Echvi_1314: Echvi_1314 - 16S RNA G1207 methylase RsmC, at 1,516,917 to 1,517,861 _1314 Echvi_1315: Echvi_1315 - exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase, at 1,517,864 to 1,519,234 _1315 Position (kb) 1516 1517 1518Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1515.987 kb on + strandat 1515.987 kb on + strandat 1515.987 kb on + strandat 1515.992 kb on + strandat 1515.993 kb on - strandat 1516.038 kb on + strandat 1516.038 kb on + strandat 1516.039 kb on - strandat 1516.077 kb on - strandat 1516.079 kb on + strandat 1516.079 kb on + strandat 1516.093 kb on + strandat 1516.093 kb on + strandat 1516.095 kb on + strandat 1516.100 kb on + strandat 1516.100 kb on + strandat 1516.101 kb on - strandat 1516.101 kb on - strandat 1516.101 kb on - strandat 1516.105 kb on - strandat 1516.110 kb on + strandat 1516.110 kb on + strandat 1516.111 kb on - strandat 1516.111 kb on - strandat 1516.111 kb on - strandat 1516.111 kb on - strandat 1516.158 kb on - strandat 1516.164 kb on + strandat 1516.164 kb on + strandat 1516.164 kb on + strandat 1516.164 kb on + strandat 1516.165 kb on - strandat 1516.165 kb on - strandat 1516.165 kb on - strandat 1516.169 kb on - strandat 1516.190 kb on + strandat 1516.191 kb on - strandat 1516.213 kb on - strandat 1516.228 kb on - strandat 1516.235 kb on - strandat 1516.235 kb on - strandat 1516.275 kb on + strandat 1516.276 kb on - strandat 1516.390 kb on + strand, within Echvi_1313at 1516.390 kb on + strand, within Echvi_1313at 1516.398 kb on + strand, within Echvi_1313at 1516.398 kb on + strand, within Echvi_1313at 1516.454 kb on - strand, within Echvi_1313at 1516.454 kb on - strand, within Echvi_1313at 1516.465 kb on + strand, within Echvi_1313at 1516.465 kb on + strand, within Echvi_1313at 1516.465 kb on + strand, within Echvi_1313at 1516.466 kb on - strand, within Echvi_1313at 1516.466 kb on - strand, within Echvi_1313at 1516.470 kb on - strand, within Echvi_1313at 1516.588 kb on + strand, within Echvi_1313at 1516.713 kb on + strand, within Echvi_1313at 1516.713 kb on + strand, within Echvi_1313at 1516.714 kb on - strand, within Echvi_1313at 1516.719 kb on + strand, within Echvi_1313at 1516.720 kb on - strand, within Echvi_1313at 1516.727 kb on + strand, within Echvi_1313at 1516.785 kb on + strand, within Echvi_1313at 1516.785 kb on + strand, within Echvi_1313at 1516.786 kb on - strand, within Echvi_1313at 1516.792 kb on + strand, within Echvi_1313at 1516.792 kb on + strand, within Echvi_1313at 1516.793 kb on - strand, within Echvi_1313at 1516.845 kb on + strand, within Echvi_1313at 1516.846 kb on - strand, within Echvi_1313at 1516.879 kb on - strandat 1517.071 kb on + strand, within Echvi_1314at 1517.072 kb on - strand, within Echvi_1314at 1517.102 kb on + strand, within Echvi_1314at 1517.102 kb on + strand, within Echvi_1314at 1517.102 kb on + strand, within Echvi_1314at 1517.102 kb on + strand, within Echvi_1314at 1517.103 kb on - strand, within Echvi_1314at 1517.103 kb on - strand, within Echvi_1314at 1517.103 kb on - strand, within Echvi_1314at 1517.105 kb on + strand, within Echvi_1314at 1517.106 kb on - strand, within Echvi_1314at 1517.106 kb on - strand, within Echvi_1314at 1517.106 kb on - strand, within Echvi_1314at 1517.106 kb on - strand, within Echvi_1314at 1517.110 kb on + strand, within Echvi_1314at 1517.111 kb on - strand, within Echvi_1314at 1517.111 kb on - strand, within Echvi_1314at 1517.148 kb on + strand, within Echvi_1314at 1517.148 kb on + strand, within Echvi_1314at 1517.149 kb on - strand, within Echvi_1314at 1517.171 kb on + strand, within Echvi_1314at 1517.282 kb on + strand, within Echvi_1314at 1517.293 kb on - strand, within Echvi_1314at 1517.327 kb on + strand, within Echvi_1314at 1517.327 kb on + strand, within Echvi_1314at 1517.327 kb on + strand, within Echvi_1314at 1517.328 kb on - strand, within Echvi_1314at 1517.328 kb on - strand, within Echvi_1314at 1517.328 kb on - strand, within Echvi_1314at 1517.374 kb on - strand, within Echvi_1314at 1517.381 kb on - strand, within Echvi_1314at 1517.381 kb on - strand, within Echvi_1314at 1517.435 kb on + strand, within Echvi_1314at 1517.486 kb on - strand, within Echvi_1314at 1517.491 kb on - strand, within Echvi_1314at 1517.591 kb on + strand, within Echvi_1314at 1517.591 kb on + strand, within Echvi_1314at 1517.620 kb on - strand, within Echvi_1314at 1517.620 kb on - strand, within Echvi_1314at 1517.628 kb on + strand, within Echvi_1314at 1517.658 kb on + strand, within Echvi_1314at 1517.658 kb on + strand, within Echvi_1314at 1517.659 kb on - strand, within Echvi_1314at 1517.674 kb on + strand, within Echvi_1314at 1517.677 kb on + strand, within Echvi_1314at 1517.677 kb on + strand, within Echvi_1314at 1517.678 kb on - strand, within Echvi_1314at 1517.678 kb on - strand, within Echvi_1314at 1517.692 kb on + strand, within Echvi_1314at 1517.692 kb on + strand, within Echvi_1314at 1517.692 kb on + strand, within Echvi_1314at 1517.692 kb on + strand, within Echvi_1314at 1517.692 kb on + strand, within Echvi_1314at 1517.692 kb on + strand, within Echvi_1314at 1517.692 kb on + strand, within Echvi_1314at 1517.692 kb on + strand, within Echvi_1314at 1517.693 kb on - strand, within Echvi_1314at 1517.693 kb on - strand, within Echvi_1314at 1517.693 kb on - strand, within Echvi_1314at 1517.693 kb on - strand, within Echvi_1314at 1517.755 kb on + strand, within Echvi_1314at 1517.756 kb on - strand, within Echvi_1314at 1517.829 kb on + strandat 1517.830 kb on - strandat 1517.834 kb on + strandat 1517.835 kb on - strandat 1517.835 kb on - strandat 1517.840 kb on + strandat 1517.840 kb on + strandat 1517.840 kb on + strandat 1517.953 kb on - strandat 1517.953 kb on - strandat 1517.958 kb on + strandat 1518.020 kb on + strand, within Echvi_1315at 1518.020 kb on + strand, within Echvi_1315at 1518.021 kb on - strand, within Echvi_1315at 1518.021 kb on - strand, within Echvi_1315at 1518.021 kb on - strand, within Echvi_1315at 1518.037 kb on + strand, within Echvi_1315at 1518.050 kb on + strand, within Echvi_1315at 1518.051 kb on - strand, within Echvi_1315at 1518.051 kb on - strand, within Echvi_1315at 1518.051 kb on - strand, within Echvi_1315at 1518.070 kb on - strand, within Echvi_1315at 1518.113 kb on - strand, within Echvi_1315at 1518.139 kb on + strand, within Echvi_1315at 1518.140 kb on - strand, within Echvi_1315at 1518.220 kb on + strand, within Echvi_1315at 1518.221 kb on - strand, within Echvi_1315at 1518.338 kb on - strand, within Echvi_1315at 1518.406 kb on + strand, within Echvi_1315at 1518.406 kb on + strand, within Echvi_1315at 1518.427 kb on + strand, within Echvi_1315at 1518.442 kb on + strand, within Echvi_1315at 1518.443 kb on - strandat 1518.443 kb on - strand, within Echvi_1315at 1518.446 kb on + strand, within Echvi_1315at 1518.482 kb on + strand, within Echvi_1315at 1518.482 kb on + strand, within Echvi_1315at 1518.483 kb on - strand, within Echvi_1315at 1518.573 kb on + strand, within Echvi_1315at 1518.573 kb on + strand, within Echvi_1315at 1518.574 kb on - strand, within Echvi_1315at 1518.589 kb on - strand, within Echvi_1315at 1518.632 kb on + strand, within Echvi_1315at 1518.633 kb on - strand, within Echvi_1315at 1518.635 kb on - strand, within Echvi_1315at 1518.636 kb on + strand, within Echvi_1315at 1518.637 kb on - strand, within Echvi_1315at 1518.683 kb on + strand, within Echvi_1315at 1518.727 kb on - strand, within Echvi_1315at 1518.727 kb on - strand, within Echvi_1315at 1518.782 kb on - strand, within Echvi_1315at 1518.783 kb on + strand, within Echvi_1315at 1518.783 kb on + strand, within Echvi_1315at 1518.784 kb on - strand, within Echvi_1315at 1518.784 kb on - strand, within Echvi_1315at 1518.784 kb on - strand, within Echvi_1315at 1518.820 kb on + strand, within Echvi_1315at 1518.820 kb on + strand, within Echvi_1315at 1518.820 kb on + strand, within Echvi_1315at 1518.820 kb on + strand, within Echvi_1315at 1518.822 kb on + strand, within Echvi_1315at 1518.822 kb on + strand, within Echvi_1315

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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1,515,987 + -0.7
1,515,987 + +0.6
1,515,987 + +0.3
1,515,992 + -1.2
1,515,993 - -0.0
1,516,038 + +0.3
1,516,038 + -2.1
1,516,039 - +1.9
1,516,077 - -0.0
1,516,079 + -0.3
1,516,079 + -1.4
1,516,093 + -1.4
1,516,093 + -0.2
1,516,095 + -0.4
1,516,100 + +0.1
1,516,100 + -1.2
1,516,101 - +1.3
1,516,101 - +0.8
1,516,101 - +1.1
1,516,105 - +0.3
1,516,110 + +0.9
1,516,110 + +1.2
1,516,111 - -1.9
1,516,111 - -2.5
1,516,111 - -0.7
1,516,111 - +1.2
1,516,158 - +0.3
1,516,164 + -0.8
1,516,164 + +0.2
1,516,164 + -1.7
1,516,164 + -1.0
1,516,165 - +0.5
1,516,165 - -0.8
1,516,165 - -0.6
1,516,169 - -1.2
1,516,190 + -1.0
1,516,191 - +0.6
1,516,213 - +1.1
1,516,228 - +0.5
1,516,235 - +0.3
1,516,235 - -0.2
1,516,275 + -0.3
1,516,276 - +0.8
1,516,390 + Echvi_1313 0.15 +0.2
1,516,390 + Echvi_1313 0.15 +0.6
1,516,398 + Echvi_1313 0.16 -0.1
1,516,398 + Echvi_1313 0.16 -0.7
1,516,454 - Echvi_1313 0.25 +0.3
1,516,454 - Echvi_1313 0.25 +1.3
1,516,465 + Echvi_1313 0.27 -1.1
1,516,465 + Echvi_1313 0.27 +1.7
1,516,465 + Echvi_1313 0.27 -1.2
1,516,466 - Echvi_1313 0.27 -0.8
1,516,466 - Echvi_1313 0.27 -0.2
1,516,470 - Echvi_1313 0.27 +2.2
1,516,588 + Echvi_1313 0.46 -1.5
1,516,713 + Echvi_1313 0.65 +0.8
1,516,713 + Echvi_1313 0.65 +1.3
1,516,714 - Echvi_1313 0.65 +0.2
1,516,719 + Echvi_1313 0.66 +1.2
1,516,720 - Echvi_1313 0.66 +1.6
1,516,727 + Echvi_1313 0.67 +0.5
1,516,785 + Echvi_1313 0.76 -0.5
1,516,785 + Echvi_1313 0.76 +0.8
1,516,786 - Echvi_1313 0.76 +0.4
1,516,792 + Echvi_1313 0.77 +0.0
1,516,792 + Echvi_1313 0.77 -0.7
1,516,793 - Echvi_1313 0.77 +1.1
1,516,845 + Echvi_1313 0.85 +2.7
1,516,846 - Echvi_1313 0.85 +1.1
1,516,879 - +1.0
1,517,071 + Echvi_1314 0.16 +0.7
1,517,072 - Echvi_1314 0.16 +1.6
1,517,102 + Echvi_1314 0.20 -0.8
1,517,102 + Echvi_1314 0.20 -0.5
1,517,102 + Echvi_1314 0.20 +1.2
1,517,102 + Echvi_1314 0.20 -0.4
1,517,103 - Echvi_1314 0.20 -0.6
1,517,103 - Echvi_1314 0.20 -0.5
1,517,103 - Echvi_1314 0.20 +1.8
1,517,105 + Echvi_1314 0.20 -1.2
1,517,106 - Echvi_1314 0.20 +0.7
1,517,106 - Echvi_1314 0.20 -0.2
1,517,106 - Echvi_1314 0.20 +2.3
1,517,106 - Echvi_1314 0.20 +0.5
1,517,110 + Echvi_1314 0.20 +0.0
1,517,111 - Echvi_1314 0.21 -0.5
1,517,111 - Echvi_1314 0.21 +0.2
1,517,148 + Echvi_1314 0.24 +1.9
1,517,148 + Echvi_1314 0.24 +1.0
1,517,149 - Echvi_1314 0.25 -2.5
1,517,171 + Echvi_1314 0.27 +0.1
1,517,282 + Echvi_1314 0.39 +0.5
1,517,293 - Echvi_1314 0.40 +0.3
1,517,327 + Echvi_1314 0.43 +0.3
1,517,327 + Echvi_1314 0.43 -1.1
1,517,327 + Echvi_1314 0.43 +1.7
1,517,328 - Echvi_1314 0.43 -0.2
1,517,328 - Echvi_1314 0.43 -0.2
1,517,328 - Echvi_1314 0.43 -3.3
1,517,374 - Echvi_1314 0.48 +0.3
1,517,381 - Echvi_1314 0.49 +0.2
1,517,381 - Echvi_1314 0.49 +1.6
1,517,435 + Echvi_1314 0.55 -0.7
1,517,486 - Echvi_1314 0.60 +1.1
1,517,491 - Echvi_1314 0.61 -2.5
1,517,591 + Echvi_1314 0.71 -0.5
1,517,591 + Echvi_1314 0.71 +1.0
1,517,620 - Echvi_1314 0.74 +0.3
1,517,620 - Echvi_1314 0.74 +2.7
1,517,628 + Echvi_1314 0.75 +1.2
1,517,658 + Echvi_1314 0.78 -1.4
1,517,658 + Echvi_1314 0.78 +1.9
1,517,659 - Echvi_1314 0.79 +0.0
1,517,674 + Echvi_1314 0.80 -1.1
1,517,677 + Echvi_1314 0.80 +2.3
1,517,677 + Echvi_1314 0.80 +2.3
1,517,678 - Echvi_1314 0.81 +0.9
1,517,678 - Echvi_1314 0.81 +0.1
1,517,692 + Echvi_1314 0.82 -0.5
1,517,692 + Echvi_1314 0.82 +0.5
1,517,692 + Echvi_1314 0.82 +0.8
1,517,692 + Echvi_1314 0.82 -0.6
1,517,692 + Echvi_1314 0.82 +1.3
1,517,692 + Echvi_1314 0.82 -0.5
1,517,692 + Echvi_1314 0.82 -2.8
1,517,692 + Echvi_1314 0.82 +0.4
1,517,693 - Echvi_1314 0.82 -2.4
1,517,693 - Echvi_1314 0.82 +0.7
1,517,693 - Echvi_1314 0.82 +0.6
1,517,693 - Echvi_1314 0.82 -0.0
1,517,755 + Echvi_1314 0.89 +0.7
1,517,756 - Echvi_1314 0.89 +2.8
1,517,829 + +0.7
1,517,830 - -2.2
1,517,834 + -1.8
1,517,835 - -0.3
1,517,835 - -1.6
1,517,840 + -1.0
1,517,840 + -2.0
1,517,840 + -0.8
1,517,953 - +1.0
1,517,953 - +0.3
1,517,958 + -0.0
1,518,020 + Echvi_1315 0.11 +1.1
1,518,020 + Echvi_1315 0.11 -1.7
1,518,021 - Echvi_1315 0.11 -0.2
1,518,021 - Echvi_1315 0.11 +1.8
1,518,021 - Echvi_1315 0.11 -1.2
1,518,037 + Echvi_1315 0.13 +0.2
1,518,050 + Echvi_1315 0.14 -0.8
1,518,051 - Echvi_1315 0.14 -1.1
1,518,051 - Echvi_1315 0.14 -0.5
1,518,051 - Echvi_1315 0.14 -0.0
1,518,070 - Echvi_1315 0.15 +0.8
1,518,113 - Echvi_1315 0.18 -0.2
1,518,139 + Echvi_1315 0.20 +0.5
1,518,140 - Echvi_1315 0.20 -1.4
1,518,220 + Echvi_1315 0.26 +0.7
1,518,221 - Echvi_1315 0.26 -0.1
1,518,338 - Echvi_1315 0.35 +1.3
1,518,406 + Echvi_1315 0.40 +1.5
1,518,406 + Echvi_1315 0.40 +0.8
1,518,427 + Echvi_1315 0.41 -1.7
1,518,442 + Echvi_1315 0.42 -1.0
1,518,443 - +0.8
1,518,443 - Echvi_1315 0.42 -0.5
1,518,446 + Echvi_1315 0.42 -1.0
1,518,482 + Echvi_1315 0.45 -2.4
1,518,482 + Echvi_1315 0.45 -0.0
1,518,483 - Echvi_1315 0.45 +0.7
1,518,573 + Echvi_1315 0.52 +1.3
1,518,573 + Echvi_1315 0.52 -0.1
1,518,574 - Echvi_1315 0.52 -2.1
1,518,589 - Echvi_1315 0.53 -0.1
1,518,632 + Echvi_1315 0.56 -0.2
1,518,633 - Echvi_1315 0.56 -0.7
1,518,635 - Echvi_1315 0.56 -0.2
1,518,636 + Echvi_1315 0.56 +0.3
1,518,637 - Echvi_1315 0.56 +1.8
1,518,683 + Echvi_1315 0.60 -2.8
1,518,727 - Echvi_1315 0.63 -1.0
1,518,727 - Echvi_1315 0.63 -0.1
1,518,782 - Echvi_1315 0.67 +0.5
1,518,783 + Echvi_1315 0.67 -1.5
1,518,783 + Echvi_1315 0.67 +0.2
1,518,784 - Echvi_1315 0.67 -0.6
1,518,784 - Echvi_1315 0.67 +1.9
1,518,784 - Echvi_1315 0.67 -0.5
1,518,820 + Echvi_1315 0.70 +1.3
1,518,820 + Echvi_1315 0.70 -1.7
1,518,820 + Echvi_1315 0.70 +0.1
1,518,820 + Echvi_1315 0.70 -0.5
1,518,822 + Echvi_1315 0.70 +1.3
1,518,822 + Echvi_1315 0.70 +0.4

Or see this region's nucleotide sequence