Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1312 and Echvi_1313 are separated by 257 nucleotides Echvi_1313 and Echvi_1314 overlap by 24 nucleotides Echvi_1314 and Echvi_1315 are separated by 2 nucleotides
Echvi_1312: Echvi_1312 - transcription-repair coupling factor (mfd), at 1,512,685 to 1,516,035
_1312
Echvi_1313: Echvi_1313 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 1,516,293 to 1,516,940
_1313
Echvi_1314: Echvi_1314 - 16S RNA G1207 methylase RsmC, at 1,516,917 to 1,517,861
_1314
Echvi_1315: Echvi_1315 - exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase, at 1,517,864 to 1,519,234
_1315
Position (kb)
1516
1517
1518 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1515.987 kb on + strand at 1515.987 kb on + strand at 1515.987 kb on + strand at 1515.992 kb on + strand at 1515.993 kb on - strand at 1516.038 kb on + strand at 1516.038 kb on + strand at 1516.039 kb on - strand at 1516.077 kb on - strand at 1516.079 kb on + strand at 1516.079 kb on + strand at 1516.093 kb on + strand at 1516.093 kb on + strand at 1516.095 kb on + strand at 1516.100 kb on + strand at 1516.100 kb on + strand at 1516.101 kb on - strand at 1516.101 kb on - strand at 1516.101 kb on - strand at 1516.105 kb on - strand at 1516.110 kb on + strand at 1516.110 kb on + strand at 1516.111 kb on - strand at 1516.111 kb on - strand at 1516.111 kb on - strand at 1516.111 kb on - strand at 1516.158 kb on - strand at 1516.164 kb on + strand at 1516.164 kb on + strand at 1516.164 kb on + strand at 1516.164 kb on + strand at 1516.165 kb on - strand at 1516.165 kb on - strand at 1516.165 kb on - strand at 1516.169 kb on - strand at 1516.190 kb on + strand at 1516.191 kb on - strand at 1516.213 kb on - strand at 1516.228 kb on - strand at 1516.235 kb on - strand at 1516.235 kb on - strand at 1516.275 kb on + strand at 1516.276 kb on - strand at 1516.390 kb on + strand, within Echvi_1313 at 1516.390 kb on + strand, within Echvi_1313 at 1516.398 kb on + strand, within Echvi_1313 at 1516.398 kb on + strand, within Echvi_1313 at 1516.454 kb on - strand, within Echvi_1313 at 1516.454 kb on - strand, within Echvi_1313 at 1516.465 kb on + strand, within Echvi_1313 at 1516.465 kb on + strand, within Echvi_1313 at 1516.465 kb on + strand, within Echvi_1313 at 1516.466 kb on - strand, within Echvi_1313 at 1516.466 kb on - strand, within Echvi_1313 at 1516.470 kb on - strand, within Echvi_1313 at 1516.588 kb on + strand, within Echvi_1313 at 1516.713 kb on + strand, within Echvi_1313 at 1516.713 kb on + strand, within Echvi_1313 at 1516.714 kb on - strand, within Echvi_1313 at 1516.719 kb on + strand, within Echvi_1313 at 1516.720 kb on - strand, within Echvi_1313 at 1516.727 kb on + strand, within Echvi_1313 at 1516.785 kb on + strand, within Echvi_1313 at 1516.785 kb on + strand, within Echvi_1313 at 1516.786 kb on - strand, within Echvi_1313 at 1516.792 kb on + strand, within Echvi_1313 at 1516.792 kb on + strand, within Echvi_1313 at 1516.793 kb on - strand, within Echvi_1313 at 1516.845 kb on + strand, within Echvi_1313 at 1516.846 kb on - strand, within Echvi_1313 at 1516.879 kb on - strand at 1517.071 kb on + strand, within Echvi_1314 at 1517.072 kb on - strand, within Echvi_1314 at 1517.102 kb on + strand, within Echvi_1314 at 1517.102 kb on + strand, within Echvi_1314 at 1517.102 kb on + strand, within Echvi_1314 at 1517.102 kb on + strand, within Echvi_1314 at 1517.103 kb on - strand, within Echvi_1314 at 1517.103 kb on - strand, within Echvi_1314 at 1517.103 kb on - strand, within Echvi_1314 at 1517.105 kb on + strand, within Echvi_1314 at 1517.106 kb on - strand, within Echvi_1314 at 1517.106 kb on - strand, within Echvi_1314 at 1517.106 kb on - strand, within Echvi_1314 at 1517.106 kb on - strand, within Echvi_1314 at 1517.110 kb on + strand, within Echvi_1314 at 1517.111 kb on - strand, within Echvi_1314 at 1517.111 kb on - strand, within Echvi_1314 at 1517.148 kb on + strand, within Echvi_1314 at 1517.148 kb on + strand, within Echvi_1314 at 1517.149 kb on - strand, within Echvi_1314 at 1517.171 kb on + strand, within Echvi_1314 at 1517.282 kb on + strand, within Echvi_1314 at 1517.293 kb on - strand, within Echvi_1314 at 1517.327 kb on + strand, within Echvi_1314 at 1517.327 kb on + strand, within Echvi_1314 at 1517.327 kb on + strand, within Echvi_1314 at 1517.328 kb on - strand, within Echvi_1314 at 1517.328 kb on - strand, within Echvi_1314 at 1517.328 kb on - strand, within Echvi_1314 at 1517.374 kb on - strand, within Echvi_1314 at 1517.381 kb on - strand, within Echvi_1314 at 1517.381 kb on - strand, within Echvi_1314 at 1517.435 kb on + strand, within Echvi_1314 at 1517.486 kb on - strand, within Echvi_1314 at 1517.491 kb on - strand, within Echvi_1314 at 1517.591 kb on + strand, within Echvi_1314 at 1517.591 kb on + strand, within Echvi_1314 at 1517.620 kb on - strand, within Echvi_1314 at 1517.620 kb on - strand, within Echvi_1314 at 1517.628 kb on + strand, within Echvi_1314 at 1517.658 kb on + strand, within Echvi_1314 at 1517.658 kb on + strand, within Echvi_1314 at 1517.659 kb on - strand, within Echvi_1314 at 1517.674 kb on + strand, within Echvi_1314 at 1517.677 kb on + strand, within Echvi_1314 at 1517.677 kb on + strand, within Echvi_1314 at 1517.678 kb on - strand, within Echvi_1314 at 1517.678 kb on - strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.693 kb on - strand, within Echvi_1314 at 1517.693 kb on - strand, within Echvi_1314 at 1517.693 kb on - strand, within Echvi_1314 at 1517.693 kb on - strand, within Echvi_1314 at 1517.755 kb on + strand, within Echvi_1314 at 1517.756 kb on - strand, within Echvi_1314 at 1517.829 kb on + strand at 1517.830 kb on - strand at 1517.834 kb on + strand at 1517.835 kb on - strand at 1517.835 kb on - strand at 1517.840 kb on + strand at 1517.840 kb on + strand at 1517.840 kb on + strand at 1517.953 kb on - strand at 1517.953 kb on - strand at 1517.958 kb on + strand at 1518.020 kb on + strand, within Echvi_1315 at 1518.020 kb on + strand, within Echvi_1315 at 1518.021 kb on - strand, within Echvi_1315 at 1518.021 kb on - strand, within Echvi_1315 at 1518.021 kb on - strand, within Echvi_1315 at 1518.037 kb on + strand, within Echvi_1315 at 1518.050 kb on + strand, within Echvi_1315 at 1518.051 kb on - strand, within Echvi_1315 at 1518.051 kb on - strand, within Echvi_1315 at 1518.051 kb on - strand, within Echvi_1315 at 1518.070 kb on - strand, within Echvi_1315 at 1518.113 kb on - strand, within Echvi_1315 at 1518.139 kb on + strand, within Echvi_1315 at 1518.140 kb on - strand, within Echvi_1315 at 1518.220 kb on + strand, within Echvi_1315 at 1518.221 kb on - strand, within Echvi_1315 at 1518.338 kb on - strand, within Echvi_1315 at 1518.406 kb on + strand, within Echvi_1315 at 1518.406 kb on + strand, within Echvi_1315 at 1518.427 kb on + strand, within Echvi_1315 at 1518.442 kb on + strand, within Echvi_1315 at 1518.443 kb on - strand at 1518.443 kb on - strand, within Echvi_1315 at 1518.446 kb on + strand, within Echvi_1315 at 1518.482 kb on + strand, within Echvi_1315 at 1518.482 kb on + strand, within Echvi_1315 at 1518.483 kb on - strand, within Echvi_1315 at 1518.573 kb on + strand, within Echvi_1315 at 1518.573 kb on + strand, within Echvi_1315 at 1518.574 kb on - strand, within Echvi_1315 at 1518.589 kb on - strand, within Echvi_1315 at 1518.632 kb on + strand, within Echvi_1315 at 1518.633 kb on - strand, within Echvi_1315 at 1518.635 kb on - strand, within Echvi_1315 at 1518.636 kb on + strand, within Echvi_1315 at 1518.637 kb on - strand, within Echvi_1315 at 1518.683 kb on + strand, within Echvi_1315 at 1518.727 kb on - strand, within Echvi_1315 at 1518.727 kb on - strand, within Echvi_1315 at 1518.782 kb on - strand, within Echvi_1315 at 1518.783 kb on + strand, within Echvi_1315 at 1518.783 kb on + strand, within Echvi_1315 at 1518.784 kb on - strand, within Echvi_1315 at 1518.784 kb on - strand, within Echvi_1315 at 1518.784 kb on - strand, within Echvi_1315 at 1518.820 kb on + strand, within Echvi_1315 at 1518.820 kb on + strand, within Echvi_1315 at 1518.820 kb on + strand, within Echvi_1315 at 1518.820 kb on + strand, within Echvi_1315 at 1518.822 kb on + strand, within Echvi_1315 at 1518.822 kb on + strand, within Echvi_1315
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,515,987 + -0.7 1,515,987 + +0.6 1,515,987 + +0.3 1,515,992 + -1.2 1,515,993 - -0.0 1,516,038 + +0.3 1,516,038 + -2.1 1,516,039 - +1.9 1,516,077 - -0.0 1,516,079 + -0.3 1,516,079 + -1.4 1,516,093 + -1.4 1,516,093 + -0.2 1,516,095 + -0.4 1,516,100 + +0.1 1,516,100 + -1.2 1,516,101 - +1.3 1,516,101 - +0.8 1,516,101 - +1.1 1,516,105 - +0.3 1,516,110 + +0.9 1,516,110 + +1.2 1,516,111 - -1.9 1,516,111 - -2.5 1,516,111 - -0.7 1,516,111 - +1.2 1,516,158 - +0.3 1,516,164 + -0.8 1,516,164 + +0.2 1,516,164 + -1.7 1,516,164 + -1.0 1,516,165 - +0.5 1,516,165 - -0.8 1,516,165 - -0.6 1,516,169 - -1.2 1,516,190 + -1.0 1,516,191 - +0.6 1,516,213 - +1.1 1,516,228 - +0.5 1,516,235 - +0.3 1,516,235 - -0.2 1,516,275 + -0.3 1,516,276 - +0.8 1,516,390 + Echvi_1313 0.15 +0.2 1,516,390 + Echvi_1313 0.15 +0.6 1,516,398 + Echvi_1313 0.16 -0.1 1,516,398 + Echvi_1313 0.16 -0.7 1,516,454 - Echvi_1313 0.25 +0.3 1,516,454 - Echvi_1313 0.25 +1.3 1,516,465 + Echvi_1313 0.27 -1.1 1,516,465 + Echvi_1313 0.27 +1.7 1,516,465 + Echvi_1313 0.27 -1.2 1,516,466 - Echvi_1313 0.27 -0.8 1,516,466 - Echvi_1313 0.27 -0.2 1,516,470 - Echvi_1313 0.27 +2.2 1,516,588 + Echvi_1313 0.46 -1.5 1,516,713 + Echvi_1313 0.65 +0.8 1,516,713 + Echvi_1313 0.65 +1.3 1,516,714 - Echvi_1313 0.65 +0.2 1,516,719 + Echvi_1313 0.66 +1.2 1,516,720 - Echvi_1313 0.66 +1.6 1,516,727 + Echvi_1313 0.67 +0.5 1,516,785 + Echvi_1313 0.76 -0.5 1,516,785 + Echvi_1313 0.76 +0.8 1,516,786 - Echvi_1313 0.76 +0.4 1,516,792 + Echvi_1313 0.77 +0.0 1,516,792 + Echvi_1313 0.77 -0.7 1,516,793 - Echvi_1313 0.77 +1.1 1,516,845 + Echvi_1313 0.85 +2.7 1,516,846 - Echvi_1313 0.85 +1.1 1,516,879 - +1.0 1,517,071 + Echvi_1314 0.16 +0.7 1,517,072 - Echvi_1314 0.16 +1.6 1,517,102 + Echvi_1314 0.20 -0.8 1,517,102 + Echvi_1314 0.20 -0.5 1,517,102 + Echvi_1314 0.20 +1.2 1,517,102 + Echvi_1314 0.20 -0.4 1,517,103 - Echvi_1314 0.20 -0.6 1,517,103 - Echvi_1314 0.20 -0.5 1,517,103 - Echvi_1314 0.20 +1.8 1,517,105 + Echvi_1314 0.20 -1.2 1,517,106 - Echvi_1314 0.20 +0.7 1,517,106 - Echvi_1314 0.20 -0.2 1,517,106 - Echvi_1314 0.20 +2.3 1,517,106 - Echvi_1314 0.20 +0.5 1,517,110 + Echvi_1314 0.20 +0.0 1,517,111 - Echvi_1314 0.21 -0.5 1,517,111 - Echvi_1314 0.21 +0.2 1,517,148 + Echvi_1314 0.24 +1.9 1,517,148 + Echvi_1314 0.24 +1.0 1,517,149 - Echvi_1314 0.25 -2.5 1,517,171 + Echvi_1314 0.27 +0.1 1,517,282 + Echvi_1314 0.39 +0.5 1,517,293 - Echvi_1314 0.40 +0.3 1,517,327 + Echvi_1314 0.43 +0.3 1,517,327 + Echvi_1314 0.43 -1.1 1,517,327 + Echvi_1314 0.43 +1.7 1,517,328 - Echvi_1314 0.43 -0.2 1,517,328 - Echvi_1314 0.43 -0.2 1,517,328 - Echvi_1314 0.43 -3.3 1,517,374 - Echvi_1314 0.48 +0.3 1,517,381 - Echvi_1314 0.49 +0.2 1,517,381 - Echvi_1314 0.49 +1.6 1,517,435 + Echvi_1314 0.55 -0.7 1,517,486 - Echvi_1314 0.60 +1.1 1,517,491 - Echvi_1314 0.61 -2.5 1,517,591 + Echvi_1314 0.71 -0.5 1,517,591 + Echvi_1314 0.71 +1.0 1,517,620 - Echvi_1314 0.74 +0.3 1,517,620 - Echvi_1314 0.74 +2.7 1,517,628 + Echvi_1314 0.75 +1.2 1,517,658 + Echvi_1314 0.78 -1.4 1,517,658 + Echvi_1314 0.78 +1.9 1,517,659 - Echvi_1314 0.79 +0.0 1,517,674 + Echvi_1314 0.80 -1.1 1,517,677 + Echvi_1314 0.80 +2.3 1,517,677 + Echvi_1314 0.80 +2.3 1,517,678 - Echvi_1314 0.81 +0.9 1,517,678 - Echvi_1314 0.81 +0.1 1,517,692 + Echvi_1314 0.82 -0.5 1,517,692 + Echvi_1314 0.82 +0.5 1,517,692 + Echvi_1314 0.82 +0.8 1,517,692 + Echvi_1314 0.82 -0.6 1,517,692 + Echvi_1314 0.82 +1.3 1,517,692 + Echvi_1314 0.82 -0.5 1,517,692 + Echvi_1314 0.82 -2.8 1,517,692 + Echvi_1314 0.82 +0.4 1,517,693 - Echvi_1314 0.82 -2.4 1,517,693 - Echvi_1314 0.82 +0.7 1,517,693 - Echvi_1314 0.82 +0.6 1,517,693 - Echvi_1314 0.82 -0.0 1,517,755 + Echvi_1314 0.89 +0.7 1,517,756 - Echvi_1314 0.89 +2.8 1,517,829 + +0.7 1,517,830 - -2.2 1,517,834 + -1.8 1,517,835 - -0.3 1,517,835 - -1.6 1,517,840 + -1.0 1,517,840 + -2.0 1,517,840 + -0.8 1,517,953 - +1.0 1,517,953 - +0.3 1,517,958 + -0.0 1,518,020 + Echvi_1315 0.11 +1.1 1,518,020 + Echvi_1315 0.11 -1.7 1,518,021 - Echvi_1315 0.11 -0.2 1,518,021 - Echvi_1315 0.11 +1.8 1,518,021 - Echvi_1315 0.11 -1.2 1,518,037 + Echvi_1315 0.13 +0.2 1,518,050 + Echvi_1315 0.14 -0.8 1,518,051 - Echvi_1315 0.14 -1.1 1,518,051 - Echvi_1315 0.14 -0.5 1,518,051 - Echvi_1315 0.14 -0.0 1,518,070 - Echvi_1315 0.15 +0.8 1,518,113 - Echvi_1315 0.18 -0.2 1,518,139 + Echvi_1315 0.20 +0.5 1,518,140 - Echvi_1315 0.20 -1.4 1,518,220 + Echvi_1315 0.26 +0.7 1,518,221 - Echvi_1315 0.26 -0.1 1,518,338 - Echvi_1315 0.35 +1.3 1,518,406 + Echvi_1315 0.40 +1.5 1,518,406 + Echvi_1315 0.40 +0.8 1,518,427 + Echvi_1315 0.41 -1.7 1,518,442 + Echvi_1315 0.42 -1.0 1,518,443 - +0.8 1,518,443 - Echvi_1315 0.42 -0.5 1,518,446 + Echvi_1315 0.42 -1.0 1,518,482 + Echvi_1315 0.45 -2.4 1,518,482 + Echvi_1315 0.45 -0.0 1,518,483 - Echvi_1315 0.45 +0.7 1,518,573 + Echvi_1315 0.52 +1.3 1,518,573 + Echvi_1315 0.52 -0.1 1,518,574 - Echvi_1315 0.52 -2.1 1,518,589 - Echvi_1315 0.53 -0.1 1,518,632 + Echvi_1315 0.56 -0.2 1,518,633 - Echvi_1315 0.56 -0.7 1,518,635 - Echvi_1315 0.56 -0.2 1,518,636 + Echvi_1315 0.56 +0.3 1,518,637 - Echvi_1315 0.56 +1.8 1,518,683 + Echvi_1315 0.60 -2.8 1,518,727 - Echvi_1315 0.63 -1.0 1,518,727 - Echvi_1315 0.63 -0.1 1,518,782 - Echvi_1315 0.67 +0.5 1,518,783 + Echvi_1315 0.67 -1.5 1,518,783 + Echvi_1315 0.67 +0.2 1,518,784 - Echvi_1315 0.67 -0.6 1,518,784 - Echvi_1315 0.67 +1.9 1,518,784 - Echvi_1315 0.67 -0.5 1,518,820 + Echvi_1315 0.70 +1.3 1,518,820 + Echvi_1315 0.70 -1.7 1,518,820 + Echvi_1315 0.70 +0.1 1,518,820 + Echvi_1315 0.70 -0.5 1,518,822 + Echvi_1315 0.70 +1.3 1,518,822 + Echvi_1315 0.70 +0.4
Or see this region's nucleotide sequence