Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0965

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0964 and Echvi_0965 are separated by 10 nucleotidesEchvi_0965 and Echvi_0966 are separated by 142 nucleotides Echvi_0964: Echvi_0964 - riboflavin biosynthesis protein RibD, at 1,114,967 to 1,116,010 _0964 Echvi_0965: Echvi_0965 - GAF domain-containing protein, at 1,116,021 to 1,116,503 _0965 Echvi_0966: Echvi_0966 - Cytochrome c peroxidase, at 1,116,646 to 1,118,481 _0966 Position (kb) 1116 1117Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1116.134 kb on - strand, within Echvi_0965at 1116.376 kb on + strand, within Echvi_0965at 1116.377 kb on - strand, within Echvi_0965at 1116.557 kb on + strandat 1116.557 kb on + strandat 1116.557 kb on + strandat 1116.558 kb on - strandat 1116.596 kb on + strandat 1116.596 kb on + strandat 1116.605 kb on + strandat 1116.605 kb on + strandat 1116.605 kb on + strandat 1116.606 kb on - strandat 1116.606 kb on - strandat 1116.608 kb on + strandat 1116.609 kb on - strandat 1116.821 kb on + strandat 1116.822 kb on - strandat 1116.822 kb on - strandat 1116.852 kb on - strand, within Echvi_0966at 1116.861 kb on + strand, within Echvi_0966at 1116.862 kb on - strand, within Echvi_0966at 1116.934 kb on - strand, within Echvi_0966at 1116.938 kb on + strand, within Echvi_0966at 1116.938 kb on + strand, within Echvi_0966at 1116.938 kb on + strand, within Echvi_0966at 1116.939 kb on - strand, within Echvi_0966at 1116.947 kb on + strand, within Echvi_0966at 1116.948 kb on - strand, within Echvi_0966at 1117.029 kb on + strand, within Echvi_0966at 1117.058 kb on - strand, within Echvi_0966at 1117.098 kb on + strand, within Echvi_0966at 1117.098 kb on + strand, within Echvi_0966at 1117.108 kb on - strand, within Echvi_0966at 1117.133 kb on - strand, within Echvi_0966at 1117.198 kb on - strand, within Echvi_0966at 1117.200 kb on - strand, within Echvi_0966at 1117.200 kb on - strand, within Echvi_0966at 1117.200 kb on - strand, within Echvi_0966at 1117.200 kb on - strand, within Echvi_0966at 1117.209 kb on + strand, within Echvi_0966at 1117.231 kb on + strand, within Echvi_0966at 1117.231 kb on + strand, within Echvi_0966at 1117.231 kb on + strand, within Echvi_0966at 1117.232 kb on - strand, within Echvi_0966at 1117.234 kb on + strand, within Echvi_0966at 1117.275 kb on - strand, within Echvi_0966at 1117.294 kb on + strand, within Echvi_0966at 1117.354 kb on + strand, within Echvi_0966at 1117.355 kb on - strand, within Echvi_0966at 1117.355 kb on - strand, within Echvi_0966at 1117.384 kb on - strand, within Echvi_0966at 1117.384 kb on - strand, within Echvi_0966at 1117.389 kb on - strand, within Echvi_0966at 1117.415 kb on + strand, within Echvi_0966at 1117.415 kb on + strand, within Echvi_0966at 1117.471 kb on - strand, within Echvi_0966

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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1,116,134 - Echvi_0965 0.23 -1.0
1,116,376 + Echvi_0965 0.73 -0.8
1,116,377 - Echvi_0965 0.74 -0.4
1,116,557 + -1.3
1,116,557 + -1.5
1,116,557 + -2.3
1,116,558 - -0.6
1,116,596 + -0.3
1,116,596 + -0.2
1,116,605 + +0.3
1,116,605 + -1.7
1,116,605 + -1.6
1,116,606 - -1.2
1,116,606 - -0.7
1,116,608 + -1.5
1,116,609 - +0.2
1,116,821 + -0.5
1,116,822 - +1.3
1,116,822 - +1.0
1,116,852 - Echvi_0966 0.11 -3.3
1,116,861 + Echvi_0966 0.12 -1.4
1,116,862 - Echvi_0966 0.12 +0.4
1,116,934 - Echvi_0966 0.16 +0.9
1,116,938 + Echvi_0966 0.16 +0.5
1,116,938 + Echvi_0966 0.16 -0.8
1,116,938 + Echvi_0966 0.16 +1.4
1,116,939 - Echvi_0966 0.16 +0.4
1,116,947 + Echvi_0966 0.16 -2.4
1,116,948 - Echvi_0966 0.16 +0.2
1,117,029 + Echvi_0966 0.21 -2.1
1,117,058 - Echvi_0966 0.22 -0.2
1,117,098 + Echvi_0966 0.25 +0.3
1,117,098 + Echvi_0966 0.25 -0.5
1,117,108 - Echvi_0966 0.25 -1.0
1,117,133 - Echvi_0966 0.27 -1.3
1,117,198 - Echvi_0966 0.30 +1.3
1,117,200 - Echvi_0966 0.30 -0.5
1,117,200 - Echvi_0966 0.30 -1.8
1,117,200 - Echvi_0966 0.30 -0.6
1,117,200 - Echvi_0966 0.30 -0.5
1,117,209 + Echvi_0966 0.31 -1.5
1,117,231 + Echvi_0966 0.32 +2.2
1,117,231 + Echvi_0966 0.32 -1.9
1,117,231 + Echvi_0966 0.32 +0.1
1,117,232 - Echvi_0966 0.32 -0.0
1,117,234 + Echvi_0966 0.32 +0.6
1,117,275 - Echvi_0966 0.34 -1.4
1,117,294 + Echvi_0966 0.35 +0.1
1,117,354 + Echvi_0966 0.39 -0.3
1,117,355 - Echvi_0966 0.39 +0.4
1,117,355 - Echvi_0966 0.39 +1.2
1,117,384 - Echvi_0966 0.40 -1.4
1,117,384 - Echvi_0966 0.40 -2.3
1,117,389 - Echvi_0966 0.40 +1.5
1,117,415 + Echvi_0966 0.42 +1.4
1,117,415 + Echvi_0966 0.42 +0.8
1,117,471 - Echvi_0966 0.45 +1.4

Or see this region's nucleotide sequence