Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0340 and Echvi_0341 are separated by 7 nucleotides Echvi_0341 and Echvi_0342 overlap by 4 nucleotides Echvi_0342 and Echvi_0343 are separated by 1 nucleotides Echvi_0343 and Echvi_0344 are separated by 65 nucleotides
Echvi_0340: Echvi_0340 - ADP-ribose pyrophosphatase, at 362,059 to 362,610
_0340
Echvi_0341: Echvi_0341 - hypothetical protein, at 362,618 to 363,199
_0341
Echvi_0342: Echvi_0342 - ATP-dependent DNA helicase, RecQ family, at 363,196 to 365,118
_0342
Echvi_0343: Echvi_0343 - Enoyl-CoA hydratase/carnithine racemase, at 365,120 to 365,896
_0343
Echvi_0344: Echvi_0344 - ComEC/Rec2-related protein, at 365,962 to 367,920
_0344
Position (kb) 363
364
365
366 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 362.221 kb on + strand, within Echvi_0340 at 362.221 kb on + strand, within Echvi_0340 at 362.222 kb on - strand, within Echvi_0340 at 362.222 kb on - strand, within Echvi_0340 at 362.307 kb on + strand, within Echvi_0340 at 362.396 kb on - strand, within Echvi_0340 at 362.605 kb on - strand at 362.611 kb on - strand at 362.620 kb on - strand at 362.634 kb on - strand at 362.642 kb on + strand at 362.642 kb on + strand at 362.643 kb on - strand at 362.643 kb on - strand at 362.644 kb on + strand at 362.645 kb on - strand at 362.673 kb on + strand at 362.673 kb on + strand at 362.674 kb on - strand at 362.674 kb on - strand at 362.674 kb on - strand at 362.804 kb on + strand, within Echvi_0341 at 362.882 kb on + strand, within Echvi_0341 at 362.883 kb on - strand, within Echvi_0341 at 363.036 kb on + strand, within Echvi_0341 at 363.037 kb on - strand, within Echvi_0341 at 363.037 kb on - strand, within Echvi_0341 at 363.045 kb on + strand, within Echvi_0341 at 363.123 kb on - strand, within Echvi_0341 at 363.136 kb on + strand, within Echvi_0341 at 363.136 kb on + strand, within Echvi_0341 at 363.137 kb on - strand, within Echvi_0341 at 363.282 kb on - strand at 363.330 kb on + strand at 363.434 kb on - strand, within Echvi_0342 at 363.502 kb on - strand, within Echvi_0342 at 365.121 kb on + strand at 365.121 kb on + strand at 365.122 kb on - strand at 365.211 kb on + strand, within Echvi_0343 at 365.211 kb on + strand, within Echvi_0343 at 365.211 kb on + strand, within Echvi_0343 at 365.299 kb on + strand, within Echvi_0343 at 365.369 kb on + strand, within Echvi_0343 at 365.370 kb on - strand, within Echvi_0343 at 365.611 kb on + strand, within Echvi_0343 at 365.612 kb on - strand, within Echvi_0343 at 365.612 kb on - strand, within Echvi_0343 at 365.612 kb on - strand, within Echvi_0343 at 365.613 kb on + strand, within Echvi_0343 at 365.613 kb on + strand, within Echvi_0343 at 365.614 kb on - strand, within Echvi_0343 at 365.614 kb on - strand, within Echvi_0343 at 365.614 kb on - strand, within Echvi_0343 at 365.672 kb on - strand, within Echvi_0343 at 365.854 kb on - strand at 365.913 kb on + strand at 365.914 kb on - strand at 365.914 kb on - strand at 365.923 kb on + strand at 365.980 kb on + strand at 366.048 kb on - strand at 366.066 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 362,221 + Echvi_0340 0.29 +1.6 362,221 + Echvi_0340 0.29 -2.1 362,222 - Echvi_0340 0.30 -0.7 362,222 - Echvi_0340 0.30 +0.2 362,307 + Echvi_0340 0.45 +1.4 362,396 - Echvi_0340 0.61 +0.7 362,605 - -0.6 362,611 - -0.2 362,620 - +1.7 362,634 - -1.3 362,642 + -0.3 362,642 + -1.8 362,643 - -2.1 362,643 - -1.3 362,644 + +2.2 362,645 - -1.3 362,673 + +0.9 362,673 + +0.5 362,674 - -1.6 362,674 - +1.0 362,674 - +0.5 362,804 + Echvi_0341 0.32 +1.4 362,882 + Echvi_0341 0.45 -0.7 362,883 - Echvi_0341 0.46 +1.3 363,036 + Echvi_0341 0.72 +3.4 363,037 - Echvi_0341 0.72 -0.2 363,037 - Echvi_0341 0.72 -1.0 363,045 + Echvi_0341 0.73 +2.8 363,123 - Echvi_0341 0.87 +0.7 363,136 + Echvi_0341 0.89 +0.6 363,136 + Echvi_0341 0.89 -0.8 363,137 - Echvi_0341 0.89 -1.8 363,282 - +0.5 363,330 + +0.3 363,434 - Echvi_0342 0.12 -3.0 363,502 - Echvi_0342 0.16 -0.4 365,121 + -0.1 365,121 + -1.1 365,122 - -1.4 365,211 + Echvi_0343 0.12 +1.6 365,211 + Echvi_0343 0.12 -1.0 365,211 + Echvi_0343 0.12 -0.4 365,299 + Echvi_0343 0.23 -0.5 365,369 + Echvi_0343 0.32 +0.2 365,370 - Echvi_0343 0.32 -0.1 365,611 + Echvi_0343 0.63 -0.1 365,612 - Echvi_0343 0.63 -0.1 365,612 - Echvi_0343 0.63 +1.0 365,612 - Echvi_0343 0.63 +1.1 365,613 + Echvi_0343 0.63 +1.5 365,613 + Echvi_0343 0.63 -0.1 365,614 - Echvi_0343 0.64 +2.2 365,614 - Echvi_0343 0.64 -1.1 365,614 - Echvi_0343 0.64 -0.3 365,672 - Echvi_0343 0.71 -3.4 365,854 - -1.6 365,913 + -2.7 365,914 - +1.1 365,914 - +0.1 365,923 + -0.4 365,980 + -1.1 366,048 - +1.2 366,066 + -0.8
Or see this region's nucleotide sequence