Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0121 and Echvi_0122 overlap by 4 nucleotides Echvi_0122 and Echvi_0123 are separated by 115 nucleotides Echvi_0123 and Echvi_0124 are separated by 5 nucleotides
Echvi_0121: Echvi_0121 - 3-dehydroquinate synthase, at 121,077 to 122,114
_0121
Echvi_0122: Echvi_0122 - 5-enolpyruvylshikimate-3-phosphate synthase, at 122,111 to 123,328
_0122
Echvi_0123: Echvi_0123 - prephenate and/or arogenate dehydratase (EC 4.2.1.51) <small>(from data)</small>, at 123,444 to 124,283
_0123
Echvi_0124: Echvi_0124 - Aspartate/tyrosine/aromatic aminotransferase, at 124,289 to 125,449
_0124
Position (kb) 122
123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 123.315 kb on + strand at 123.429 kb on + strand at 123.472 kb on + strand at 123.499 kb on - strand at 123.499 kb on - strand at 123.499 kb on - strand at 123.654 kb on + strand, within Echvi_0123 at 123.654 kb on + strand, within Echvi_0123 at 123.655 kb on - strand, within Echvi_0123 at 123.688 kb on + strand, within Echvi_0123 at 123.688 kb on + strand, within Echvi_0123 at 123.689 kb on - strand, within Echvi_0123 at 123.689 kb on - strand, within Echvi_0123 at 123.689 kb on - strand, within Echvi_0123 at 123.689 kb on - strand, within Echvi_0123 at 123.722 kb on - strand, within Echvi_0123 at 123.954 kb on - strand, within Echvi_0123 at 123.995 kb on + strand, within Echvi_0123 at 124.025 kb on - strand, within Echvi_0123 at 124.164 kb on + strand, within Echvi_0123 at 124.199 kb on - strand, within Echvi_0123
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 123,315 + +1.1 123,429 + +0.2 123,472 + -0.1 123,499 - -0.2 123,499 - -1.5 123,499 - -2.0 123,654 + Echvi_0123 0.25 +0.6 123,654 + Echvi_0123 0.25 -0.4 123,655 - Echvi_0123 0.25 -0.2 123,688 + Echvi_0123 0.29 +0.7 123,688 + Echvi_0123 0.29 +0.2 123,689 - Echvi_0123 0.29 -3.0 123,689 - Echvi_0123 0.29 -0.2 123,689 - Echvi_0123 0.29 +0.4 123,689 - Echvi_0123 0.29 +0.2 123,722 - Echvi_0123 0.33 -0.2 123,954 - Echvi_0123 0.61 +0.2 123,995 + Echvi_0123 0.66 -2.9 124,025 - Echvi_0123 0.69 +2.9 124,164 + Echvi_0123 0.86 +0.8 124,199 - Echvi_0123 0.90 +1.2
Or see this region's nucleotide sequence