Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0120 and Echvi_0121 are separated by 25 nucleotides Echvi_0121 and Echvi_0122 overlap by 4 nucleotides
Echvi_0120: Echvi_0120 - 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase / chorismate mutase (EC 2.5.1.54; EC 5.4.99.5) (from data) , at 119,948 to 121,051
_0120
Echvi_0121: Echvi_0121 - 3-dehydroquinate synthase, at 121,077 to 122,114
_0121
Echvi_0122: Echvi_0122 - 5-enolpyruvylshikimate-3-phosphate synthase, at 122,111 to 123,328
_0122
Position (kb)
121
122
123 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 120.202 kb on + strand, within Echvi_0120 at 120.214 kb on - strand, within Echvi_0120 at 120.238 kb on - strand, within Echvi_0120 at 120.244 kb on - strand, within Echvi_0120 at 120.255 kb on + strand, within Echvi_0120 at 120.255 kb on + strand, within Echvi_0120 at 120.288 kb on + strand, within Echvi_0120 at 120.346 kb on + strand, within Echvi_0120 at 120.415 kb on - strand, within Echvi_0120 at 120.418 kb on + strand, within Echvi_0120 at 120.418 kb on + strand, within Echvi_0120 at 120.419 kb on - strand, within Echvi_0120 at 120.551 kb on - strand, within Echvi_0120 at 120.625 kb on - strand, within Echvi_0120 at 120.846 kb on + strand, within Echvi_0120 at 120.846 kb on + strand, within Echvi_0120 at 120.847 kb on - strand, within Echvi_0120 at 120.868 kb on + strand, within Echvi_0120 at 120.868 kb on + strand, within Echvi_0120 at 120.869 kb on - strand, within Echvi_0120 at 120.869 kb on - strand, within Echvi_0120 at 120.869 kb on - strand, within Echvi_0120 at 120.996 kb on + strand at 121.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 120,202 + Echvi_0120 0.23 -1.5 120,214 - Echvi_0120 0.24 -2.2 120,238 - Echvi_0120 0.26 -3.2 120,244 - Echvi_0120 0.27 -1.2 120,255 + Echvi_0120 0.28 -1.2 120,255 + Echvi_0120 0.28 -1.7 120,288 + Echvi_0120 0.31 -4.3 120,346 + Echvi_0120 0.36 -1.0 120,415 - Echvi_0120 0.42 -2.4 120,418 + Echvi_0120 0.43 -0.8 120,418 + Echvi_0120 0.43 -3.4 120,419 - Echvi_0120 0.43 -3.0 120,551 - Echvi_0120 0.55 -0.6 120,625 - Echvi_0120 0.61 -0.4 120,846 + Echvi_0120 0.81 -0.4 120,846 + Echvi_0120 0.81 -0.4 120,847 - Echvi_0120 0.81 -1.0 120,868 + Echvi_0120 0.83 -0.3 120,868 + Echvi_0120 0.83 -1.3 120,869 - Echvi_0120 0.83 -1.5 120,869 - Echvi_0120 0.83 +0.3 120,869 - Echvi_0120 0.83 -2.3 120,996 + -1.4 121,061 - -1.4
Or see this region's nucleotide sequence