Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21570

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21560 and CA264_21565 are separated by 103 nucleotidesCA264_21565 and CA264_21570 are separated by 109 nucleotidesCA264_21570 and CA264_21575 are separated by 68 nucleotides CA264_21560: CA264_21560 - copper-translocating P-type ATPase, at 179,123 to 181,267 _21560 CA264_21565: CA264_21565 - hypothetical protein, at 181,371 to 181,721 _21565 CA264_21570: CA264_21570 - hypothetical protein, at 181,831 to 182,100 _21570 CA264_21575: CA264_21575 - (2Fe-2S)-binding protein, at 182,169 to 183,701 _21575 Position (kb) 181 182 183Strain fitness (log2 ratio) -2 -1 0 1 2at 180.858 kb on + strand, within CA264_21560at 180.885 kb on + strand, within CA264_21560at 180.981 kb on + strand, within CA264_21560at 181.023 kb on + strand, within CA264_21560at 181.029 kb on + strand, within CA264_21560at 181.107 kb on + strandat 181.121 kb on + strandat 181.121 kb on + strandat 181.122 kb on - strandat 181.158 kb on + strandat 181.158 kb on + strandat 181.160 kb on + strandat 181.160 kb on + strandat 181.160 kb on + strandat 181.161 kb on - strandat 181.161 kb on - strandat 181.204 kb on - strandat 181.234 kb on + strandat 181.261 kb on + strandat 181.265 kb on + strandat 181.266 kb on - strandat 181.269 kb on - strandat 181.271 kb on + strandat 181.272 kb on - strandat 181.272 kb on - strandat 181.272 kb on - strandat 181.281 kb on + strandat 181.281 kb on + strandat 181.282 kb on - strandat 181.287 kb on - strandat 181.296 kb on + strandat 181.297 kb on - strandat 181.298 kb on + strandat 181.298 kb on + strandat 181.299 kb on - strandat 181.315 kb on - strandat 181.329 kb on - strandat 181.344 kb on + strandat 181.345 kb on - strandat 181.345 kb on - strandat 181.346 kb on + strandat 181.346 kb on + strandat 181.346 kb on + strandat 181.347 kb on - strandat 181.414 kb on + strand, within CA264_21565at 181.414 kb on + strand, within CA264_21565at 181.414 kb on + strand, within CA264_21565at 181.415 kb on - strand, within CA264_21565at 181.418 kb on - strand, within CA264_21565at 181.418 kb on - strand, within CA264_21565at 181.484 kb on + strand, within CA264_21565at 181.505 kb on + strand, within CA264_21565at 181.506 kb on - strand, within CA264_21565at 181.534 kb on + strand, within CA264_21565at 181.534 kb on + strand, within CA264_21565at 181.534 kb on + strand, within CA264_21565at 181.534 kb on + strand, within CA264_21565at 181.538 kb on + strand, within CA264_21565at 181.539 kb on - strand, within CA264_21565at 181.539 kb on - strand, within CA264_21565at 181.543 kb on + strand, within CA264_21565at 181.543 kb on + strand, within CA264_21565at 181.543 kb on + strand, within CA264_21565at 181.544 kb on - strand, within CA264_21565at 181.588 kb on + strand, within CA264_21565at 181.591 kb on + strand, within CA264_21565at 181.777 kb on - strandat 181.787 kb on + strandat 181.788 kb on - strandat 181.808 kb on - strandat 181.818 kb on + strandat 181.819 kb on - strandat 181.821 kb on + strandat 181.841 kb on + strandat 181.841 kb on + strandat 181.842 kb on - strandat 181.842 kb on - strandat 181.846 kb on - strandat 181.846 kb on - strandat 181.846 kb on - strandat 181.865 kb on + strand, within CA264_21570at 181.865 kb on + strand, within CA264_21570at 181.866 kb on - strand, within CA264_21570at 181.866 kb on - strand, within CA264_21570at 181.870 kb on + strand, within CA264_21570at 181.931 kb on + strand, within CA264_21570at 181.931 kb on + strand, within CA264_21570at 181.932 kb on - strand, within CA264_21570at 182.004 kb on + strand, within CA264_21570at 182.039 kb on - strand, within CA264_21570at 182.105 kb on - strandat 182.139 kb on + strandat 182.144 kb on - strandat 182.147 kb on + strandat 182.148 kb on - strandat 182.163 kb on + strandat 182.164 kb on - strandat 182.189 kb on + strandat 182.192 kb on - strandat 182.248 kb on - strandat 182.394 kb on + strand, within CA264_21575at 182.420 kb on + strand, within CA264_21575at 182.420 kb on + strand, within CA264_21575at 182.420 kb on + strand, within CA264_21575at 182.421 kb on - strand, within CA264_21575at 182.426 kb on - strand, within CA264_21575at 182.432 kb on + strand, within CA264_21575at 182.487 kb on - strand, within CA264_21575at 182.487 kb on - strand, within CA264_21575at 182.494 kb on + strand, within CA264_21575at 182.495 kb on - strand, within CA264_21575at 182.550 kb on + strand, within CA264_21575at 182.608 kb on + strand, within CA264_21575at 182.609 kb on - strand, within CA264_21575at 182.660 kb on + strand, within CA264_21575at 182.716 kb on - strand, within CA264_21575at 182.788 kb on + strand, within CA264_21575at 182.808 kb on - strand, within CA264_21575at 182.833 kb on + strand, within CA264_21575at 182.834 kb on - strand, within CA264_21575at 182.858 kb on + strand, within CA264_21575at 182.880 kb on + strand, within CA264_21575at 182.964 kb on + strand, within CA264_21575at 182.964 kb on + strand, within CA264_21575at 182.965 kb on - strand, within CA264_21575at 182.975 kb on - strandat 182.992 kb on - strand, within CA264_21575at 183.074 kb on + strand, within CA264_21575at 183.075 kb on - strand, within CA264_21575

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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180,858 + CA264_21560 0.81 +0.7
180,885 + CA264_21560 0.82 +0.0
180,981 + CA264_21560 0.87 -0.4
181,023 + CA264_21560 0.89 -0.5
181,029 + CA264_21560 0.89 -0.2
181,107 + +0.0
181,121 + -0.5
181,121 + +2.1
181,122 - -0.3
181,158 + -0.0
181,158 + +0.7
181,160 + -1.0
181,160 + -0.7
181,160 + -0.6
181,161 - +0.7
181,161 - +0.1
181,204 - -0.7
181,234 + -0.5
181,261 + +0.1
181,265 + +0.2
181,266 - -2.7
181,269 - +0.3
181,271 + -0.2
181,272 - -0.4
181,272 - -0.5
181,272 - -0.5
181,281 + +0.2
181,281 + -0.1
181,282 - -0.5
181,287 - -0.2
181,296 + +2.3
181,297 - +0.2
181,298 + -0.6
181,298 + +0.5
181,299 - -0.6
181,315 - +1.0
181,329 - -0.3
181,344 + +2.2
181,345 - -0.6
181,345 - -0.3
181,346 + +0.7
181,346 + -0.5
181,346 + +0.7
181,347 - +0.2
181,414 + CA264_21565 0.12 +0.3
181,414 + CA264_21565 0.12 -0.1
181,414 + CA264_21565 0.12 -0.7
181,415 - CA264_21565 0.13 +0.0
181,418 - CA264_21565 0.13 -0.7
181,418 - CA264_21565 0.13 -1.0
181,484 + CA264_21565 0.32 +0.5
181,505 + CA264_21565 0.38 +1.0
181,506 - CA264_21565 0.38 +1.1
181,534 + CA264_21565 0.46 +0.1
181,534 + CA264_21565 0.46 +0.9
181,534 + CA264_21565 0.46 -0.3
181,534 + CA264_21565 0.46 -0.5
181,538 + CA264_21565 0.48 +0.3
181,539 - CA264_21565 0.48 +0.2
181,539 - CA264_21565 0.48 +0.2
181,543 + CA264_21565 0.49 -0.1
181,543 + CA264_21565 0.49 +1.1
181,543 + CA264_21565 0.49 +0.3
181,544 - CA264_21565 0.49 +0.1
181,588 + CA264_21565 0.62 +1.3
181,591 + CA264_21565 0.63 +0.1
181,777 - +0.5
181,787 + -1.7
181,788 - +0.5
181,808 - +0.5
181,818 + +0.0
181,819 - +0.2
181,821 + +0.2
181,841 + -0.1
181,841 + +0.8
181,842 - +0.4
181,842 - +0.7
181,846 - +0.5
181,846 - +0.1
181,846 - +1.4
181,865 + CA264_21570 0.13 +0.4
181,865 + CA264_21570 0.13 -0.0
181,866 - CA264_21570 0.13 -0.3
181,866 - CA264_21570 0.13 +1.3
181,870 + CA264_21570 0.14 -0.3
181,931 + CA264_21570 0.37 +0.3
181,931 + CA264_21570 0.37 +1.7
181,932 - CA264_21570 0.37 +0.1
182,004 + CA264_21570 0.64 -0.4
182,039 - CA264_21570 0.77 -0.2
182,105 - +0.2
182,139 + +0.6
182,144 - +2.7
182,147 + +0.3
182,148 - -1.0
182,163 + -0.1
182,164 - -0.1
182,189 + -0.2
182,192 - +0.3
182,248 - +0.1
182,394 + CA264_21575 0.15 -1.2
182,420 + CA264_21575 0.16 -0.5
182,420 + CA264_21575 0.16 -0.7
182,420 + CA264_21575 0.16 -0.2
182,421 - CA264_21575 0.16 +0.2
182,426 - CA264_21575 0.17 -1.5
182,432 + CA264_21575 0.17 -0.3
182,487 - CA264_21575 0.21 -0.7
182,487 - CA264_21575 0.21 +0.1
182,494 + CA264_21575 0.21 +1.1
182,495 - CA264_21575 0.21 +0.2
182,550 + CA264_21575 0.25 -0.4
182,608 + CA264_21575 0.29 -1.0
182,609 - CA264_21575 0.29 -0.2
182,660 + CA264_21575 0.32 +0.1
182,716 - CA264_21575 0.36 +0.1
182,788 + CA264_21575 0.40 +0.6
182,808 - CA264_21575 0.42 -0.3
182,833 + CA264_21575 0.43 -0.2
182,834 - CA264_21575 0.43 -0.1
182,858 + CA264_21575 0.45 -0.3
182,880 + CA264_21575 0.46 -0.0
182,964 + CA264_21575 0.52 +0.1
182,964 + CA264_21575 0.52 +0.3
182,965 - CA264_21575 0.52 -1.3
182,975 - +1.7
182,992 - CA264_21575 0.54 +0.2
183,074 + CA264_21575 0.59 -2.0
183,075 - CA264_21575 0.59 -0.5

Or see this region's nucleotide sequence