Experiment: m.b. Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19955 and CA264_19960 are separated by 69 nucleotides CA264_19960 and CA264_19965 are separated by 62 nucleotides CA264_19965 and CA264_19970 are separated by 203 nucleotides CA264_19970 and CA264_19975 are separated by 14 nucleotides
CA264_19955: CA264_19955 - SAM-dependent methyltransferase, at 4,600,235 to 4,601,074
_19955
CA264_19960: CA264_19960 - NUDIX hydrolase, at 4,601,144 to 4,601,623
_19960
CA264_19965: CA264_19965 - dipeptidyl aminopeptidase, at 4,601,686 to 4,602,768
_19965
CA264_19970: CA264_19970 - hypothetical protein, at 4,602,972 to 4,603,226
_19970
CA264_19975: CA264_19975 - hypothetical protein, at 4,603,241 to 4,607,191
_19975
Position (kb)
4601
4602
4603 Strain fitness (log2 ratio)
-2
-1
0
1 at 4600.744 kb on + strand, within CA264_19955 at 4600.816 kb on - strand, within CA264_19955 at 4600.848 kb on + strand, within CA264_19955 at 4600.849 kb on - strand, within CA264_19955 at 4600.922 kb on + strand, within CA264_19955 at 4600.999 kb on - strand at 4601.070 kb on - strand at 4601.090 kb on + strand at 4601.091 kb on - strand at 4601.103 kb on + strand at 4601.134 kb on + strand at 4601.145 kb on + strand at 4601.237 kb on + strand, within CA264_19960 at 4601.358 kb on + strand, within CA264_19960 at 4601.359 kb on - strand, within CA264_19960 at 4601.364 kb on + strand, within CA264_19960 at 4601.365 kb on - strand, within CA264_19960 at 4601.522 kb on + strand, within CA264_19960 at 4601.539 kb on + strand, within CA264_19960 at 4601.540 kb on - strand, within CA264_19960 at 4601.574 kb on - strand, within CA264_19960 at 4601.593 kb on + strand at 4601.663 kb on - strand at 4601.669 kb on + strand at 4601.669 kb on + strand at 4601.670 kb on - strand at 4601.670 kb on - strand at 4601.896 kb on + strand, within CA264_19965 at 4601.904 kb on - strand, within CA264_19965 at 4601.904 kb on - strand, within CA264_19965 at 4601.996 kb on - strand, within CA264_19965 at 4601.997 kb on + strand, within CA264_19965 at 4602.042 kb on - strand, within CA264_19965 at 4602.119 kb on - strand, within CA264_19965 at 4602.119 kb on - strand, within CA264_19965 at 4602.129 kb on + strand, within CA264_19965 at 4602.130 kb on - strand, within CA264_19965 at 4602.130 kb on - strand, within CA264_19965 at 4602.132 kb on - strand, within CA264_19965 at 4602.150 kb on - strand, within CA264_19965 at 4602.279 kb on - strand, within CA264_19965 at 4602.322 kb on + strand, within CA264_19965 at 4602.419 kb on + strand, within CA264_19965 at 4602.419 kb on + strand, within CA264_19965 at 4602.545 kb on - strand, within CA264_19965 at 4602.545 kb on - strand, within CA264_19965 at 4602.568 kb on - strand, within CA264_19965 at 4602.568 kb on - strand, within CA264_19965 at 4602.574 kb on + strand, within CA264_19965 at 4602.574 kb on + strand, within CA264_19965 at 4602.584 kb on - strand, within CA264_19965 at 4602.744 kb on + strand at 4602.771 kb on - strand at 4602.771 kb on - strand at 4602.772 kb on + strand at 4602.815 kb on + strand at 4602.830 kb on - strand at 4603.012 kb on + strand, within CA264_19970 at 4603.063 kb on - strand, within CA264_19970 at 4603.235 kb on + strand at 4603.249 kb on + strand at 4603.262 kb on + strand at 4603.279 kb on + strand at 4603.280 kb on - strand at 4603.345 kb on - strand at 4603.382 kb on - strand at 4603.433 kb on + strand at 4603.433 kb on + strand at 4603.486 kb on + strand at 4603.489 kb on - strand at 4603.528 kb on + strand at 4603.538 kb on + strand at 4603.539 kb on - strand at 4603.712 kb on + strand, within CA264_19975 at 4603.713 kb on - strand, within CA264_19975 at 4603.713 kb on - strand, within CA264_19975
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml remove 4,600,744 + CA264_19955 0.61 +1.2 4,600,816 - CA264_19955 0.69 -0.5 4,600,848 + CA264_19955 0.73 -1.3 4,600,849 - CA264_19955 0.73 -0.4 4,600,922 + CA264_19955 0.82 -0.0 4,600,999 - +0.9 4,601,070 - -0.5 4,601,090 + +0.0 4,601,091 - +1.0 4,601,103 + -0.6 4,601,134 + -0.2 4,601,145 + -0.7 4,601,237 + CA264_19960 0.19 +0.0 4,601,358 + CA264_19960 0.45 -0.3 4,601,359 - CA264_19960 0.45 +0.1 4,601,364 + CA264_19960 0.46 +0.4 4,601,365 - CA264_19960 0.46 -1.1 4,601,522 + CA264_19960 0.79 -0.8 4,601,539 + CA264_19960 0.82 +0.4 4,601,540 - CA264_19960 0.82 -1.1 4,601,574 - CA264_19960 0.90 -1.2 4,601,593 + -0.8 4,601,663 - -0.4 4,601,669 + +0.3 4,601,669 + -0.7 4,601,670 - +0.2 4,601,670 - -0.9 4,601,896 + CA264_19965 0.19 -0.3 4,601,904 - CA264_19965 0.20 -0.0 4,601,904 - CA264_19965 0.20 +1.6 4,601,996 - CA264_19965 0.29 +0.9 4,601,997 + CA264_19965 0.29 -1.0 4,602,042 - CA264_19965 0.33 -0.2 4,602,119 - CA264_19965 0.40 -0.9 4,602,119 - CA264_19965 0.40 +0.9 4,602,129 + CA264_19965 0.41 +0.6 4,602,130 - CA264_19965 0.41 -2.3 4,602,130 - CA264_19965 0.41 -0.2 4,602,132 - CA264_19965 0.41 -0.9 4,602,150 - CA264_19965 0.43 -0.5 4,602,279 - CA264_19965 0.55 -0.4 4,602,322 + CA264_19965 0.59 -0.5 4,602,419 + CA264_19965 0.68 +0.8 4,602,419 + CA264_19965 0.68 -0.2 4,602,545 - CA264_19965 0.79 -0.8 4,602,545 - CA264_19965 0.79 -1.4 4,602,568 - CA264_19965 0.81 -0.3 4,602,568 - CA264_19965 0.81 -0.5 4,602,574 + CA264_19965 0.82 +0.1 4,602,574 + CA264_19965 0.82 -1.7 4,602,584 - CA264_19965 0.83 -0.8 4,602,744 + -0.2 4,602,771 - +0.5 4,602,771 - -0.4 4,602,772 + -1.0 4,602,815 + -0.7 4,602,830 - -0.7 4,603,012 + CA264_19970 0.16 -1.7 4,603,063 - CA264_19970 0.36 +1.0 4,603,235 + -0.4 4,603,249 + -0.4 4,603,262 + -1.2 4,603,279 + +0.4 4,603,280 - -1.0 4,603,345 - +0.5 4,603,382 - -0.7 4,603,433 + -1.1 4,603,433 + +0.1 4,603,486 + -0.2 4,603,489 - -0.8 4,603,528 + -0.7 4,603,538 + -1.5 4,603,539 - +1.2 4,603,712 + CA264_19975 0.12 -0.6 4,603,713 - CA264_19975 0.12 -0.8 4,603,713 - CA264_19975 0.12 +0.4
Or see this region's nucleotide sequence