Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19900

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19890 and CA264_19895 are separated by 59 nucleotidesCA264_19895 and CA264_19900 are separated by 191 nucleotidesCA264_19900 and CA264_19905 are separated by 78 nucleotides CA264_19890: CA264_19890 - non-canonical purine NTP pyrophosphatase, at 4,587,909 to 4,588,487 _19890 CA264_19895: CA264_19895 - phosphoribosyltransferase, at 4,588,547 to 4,589,062 _19895 CA264_19900: CA264_19900 - 50S ribosomal protein L31, at 4,589,254 to 4,589,499 _19900 CA264_19905: CA264_19905 - glucose-1-phosphate thymidylyltransferase, at 4,589,578 to 4,590,783 _19905 Position (kb) 4589 4590Strain fitness (log2 ratio) -2 -1 0 1at 4588.304 kb on + strand, within CA264_19890at 4588.322 kb on - strand, within CA264_19890at 4588.378 kb on - strand, within CA264_19890at 4588.415 kb on - strand, within CA264_19890at 4588.415 kb on - strand, within CA264_19890at 4588.511 kb on + strandat 4588.511 kb on + strandat 4588.511 kb on + strandat 4588.511 kb on + strandat 4588.511 kb on + strandat 4588.511 kb on + strandat 4588.511 kb on + strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.513 kb on + strandat 4588.513 kb on + strandat 4588.514 kb on - strandat 4588.514 kb on - strandat 4588.514 kb on - strandat 4588.514 kb on - strandat 4588.516 kb on + strandat 4588.516 kb on + strandat 4588.516 kb on + strandat 4588.517 kb on - strandat 4588.518 kb on + strandat 4588.519 kb on - strandat 4588.519 kb on - strandat 4588.520 kb on + strandat 4588.520 kb on + strandat 4588.521 kb on - strandat 4588.521 kb on - strandat 4588.548 kb on + strandat 4588.549 kb on - strandat 4588.633 kb on - strand, within CA264_19895at 4588.651 kb on - strand, within CA264_19895at 4588.728 kb on + strand, within CA264_19895at 4588.790 kb on - strand, within CA264_19895at 4588.795 kb on + strand, within CA264_19895at 4588.796 kb on - strand, within CA264_19895at 4588.889 kb on + strand, within CA264_19895at 4588.890 kb on - strand, within CA264_19895at 4589.062 kb on + strandat 4589.063 kb on - strandat 4589.063 kb on - strandat 4589.063 kb on - strandat 4589.066 kb on + strandat 4589.067 kb on - strandat 4589.097 kb on - strandat 4589.099 kb on - strandat 4589.128 kb on - strandat 4589.155 kb on - strandat 4589.577 kb on + strandat 4589.577 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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4,588,304 + CA264_19890 0.68 +0.1
4,588,322 - CA264_19890 0.71 +1.0
4,588,378 - CA264_19890 0.81 -0.4
4,588,415 - CA264_19890 0.87 +0.4
4,588,415 - CA264_19890 0.87 -0.7
4,588,511 + -0.1
4,588,511 + +0.5
4,588,511 + -0.2
4,588,511 + -0.2
4,588,511 + -0.0
4,588,511 + -1.9
4,588,511 + -0.0
4,588,512 - +0.2
4,588,512 - +1.1
4,588,512 - -0.1
4,588,512 - -0.5
4,588,512 - -0.5
4,588,512 - -0.8
4,588,512 - +0.3
4,588,512 - -0.7
4,588,513 + -0.5
4,588,513 + -0.2
4,588,514 - +0.1
4,588,514 - -0.2
4,588,514 - +0.4
4,588,514 - +0.3
4,588,516 + -1.9
4,588,516 + +0.0
4,588,516 + -0.3
4,588,517 - -0.3
4,588,518 + +0.1
4,588,519 - -0.2
4,588,519 - +0.3
4,588,520 + +0.1
4,588,520 + -0.0
4,588,521 - +0.1
4,588,521 - +0.1
4,588,548 + -0.8
4,588,549 - -2.2
4,588,633 - CA264_19895 0.17 -0.7
4,588,651 - CA264_19895 0.20 +0.1
4,588,728 + CA264_19895 0.35 -0.8
4,588,790 - CA264_19895 0.47 -0.3
4,588,795 + CA264_19895 0.48 -0.3
4,588,796 - CA264_19895 0.48 -1.7
4,588,889 + CA264_19895 0.66 +0.0
4,588,890 - CA264_19895 0.66 -0.1
4,589,062 + -1.7
4,589,063 - +0.5
4,589,063 - -0.3
4,589,063 - -1.5
4,589,066 + -0.6
4,589,067 - +0.7
4,589,097 - -0.6
4,589,099 - +1.0
4,589,128 - -0.9
4,589,155 - -0.4
4,589,577 + +0.8
4,589,577 + +0.1

Or see this region's nucleotide sequence