Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18250

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18245 and CA264_18250 are separated by 47 nucleotidesCA264_18250 and CA264_18255 are separated by 56 nucleotides CA264_18245: CA264_18245 - NADH-quinone oxidoreductase subunit A, at 4,243,005 to 4,243,514 _18245 CA264_18250: CA264_18250 - NADH-quinone oxidoreductase subunit B, at 4,243,562 to 4,244,104 _18250 CA264_18255: CA264_18255 - hypothetical protein, at 4,244,161 to 4,247,547 _18255 Position (kb) 4243 4244 4245Strain fitness (log2 ratio) -2 -1 0 1at 4242.579 kb on + strandat 4242.598 kb on + strandat 4242.598 kb on + strandat 4242.599 kb on - strandat 4242.658 kb on - strandat 4242.658 kb on - strandat 4242.672 kb on + strandat 4242.695 kb on - strandat 4242.751 kb on + strandat 4242.752 kb on - strandat 4242.754 kb on - strandat 4242.754 kb on - strandat 4242.863 kb on - strandat 4242.865 kb on + strandat 4242.907 kb on + strandat 4242.928 kb on + strandat 4242.962 kb on - strandat 4243.002 kb on - strandat 4243.037 kb on + strandat 4243.334 kb on + strand, within CA264_18245at 4243.452 kb on + strand, within CA264_18245at 4243.512 kb on + strandat 4243.591 kb on - strandat 4243.616 kb on - strandat 4243.672 kb on + strand, within CA264_18250at 4244.115 kb on + strandat 4244.122 kb on + strandat 4244.225 kb on + strandat 4244.226 kb on - strandat 4244.227 kb on + strandat 4244.232 kb on + strandat 4244.309 kb on + strandat 4244.461 kb on - strandat 4244.540 kb on - strand, within CA264_18255at 4244.544 kb on - strand, within CA264_18255at 4244.550 kb on + strand, within CA264_18255at 4244.551 kb on - strand, within CA264_18255at 4244.551 kb on - strand, within CA264_18255at 4244.597 kb on + strand, within CA264_18255at 4244.599 kb on + strand, within CA264_18255at 4244.599 kb on + strand, within CA264_18255at 4244.600 kb on - strand, within CA264_18255at 4244.600 kb on - strand, within CA264_18255at 4244.623 kb on + strand, within CA264_18255at 4244.624 kb on - strand, within CA264_18255at 4244.649 kb on + strand, within CA264_18255at 4244.649 kb on + strand, within CA264_18255at 4244.833 kb on + strand, within CA264_18255at 4244.833 kb on + strand, within CA264_18255at 4244.923 kb on - strand, within CA264_18255at 4245.007 kb on + strand, within CA264_18255at 4245.008 kb on - strand, within CA264_18255at 4245.008 kb on - strand, within CA264_18255at 4245.093 kb on + strand, within CA264_18255

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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4,242,579 + +0.4
4,242,598 + +0.1
4,242,598 + -0.4
4,242,599 - -0.1
4,242,658 - -0.9
4,242,658 - -0.6
4,242,672 + +0.7
4,242,695 - -1.0
4,242,751 + -1.1
4,242,752 - +0.1
4,242,754 - -0.3
4,242,754 - -0.3
4,242,863 - +0.1
4,242,865 + +1.0
4,242,907 + +1.2
4,242,928 + +1.2
4,242,962 - -1.1
4,243,002 - +0.2
4,243,037 + +0.8
4,243,334 + CA264_18245 0.65 -2.0
4,243,452 + CA264_18245 0.88 -1.5
4,243,512 + -0.5
4,243,591 - +1.0
4,243,616 - -1.4
4,243,672 + CA264_18250 0.20 -1.9
4,244,115 + -0.9
4,244,122 + +0.3
4,244,225 + -0.2
4,244,226 - +0.2
4,244,227 + -0.3
4,244,232 + -0.7
4,244,309 + -0.4
4,244,461 - +1.1
4,244,540 - CA264_18255 0.11 +0.7
4,244,544 - CA264_18255 0.11 -0.3
4,244,550 + CA264_18255 0.11 +0.5
4,244,551 - CA264_18255 0.12 +0.1
4,244,551 - CA264_18255 0.12 +0.7
4,244,597 + CA264_18255 0.13 +0.2
4,244,599 + CA264_18255 0.13 +0.2
4,244,599 + CA264_18255 0.13 -2.2
4,244,600 - CA264_18255 0.13 -0.4
4,244,600 - CA264_18255 0.13 +0.1
4,244,623 + CA264_18255 0.14 -0.1
4,244,624 - CA264_18255 0.14 +0.0
4,244,649 + CA264_18255 0.14 -0.0
4,244,649 + CA264_18255 0.14 +1.2
4,244,833 + CA264_18255 0.20 +0.2
4,244,833 + CA264_18255 0.20 -0.7
4,244,923 - CA264_18255 0.22 +0.8
4,245,007 + CA264_18255 0.25 -0.3
4,245,008 - CA264_18255 0.25 -0.3
4,245,008 - CA264_18255 0.25 -0.2
4,245,093 + CA264_18255 0.28 +0.2

Or see this region's nucleotide sequence