Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18010

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18000 and CA264_18005 are separated by 114 nucleotidesCA264_18005 and CA264_18010 are separated by 349 nucleotidesCA264_18010 and CA264_18015 are separated by 792 nucleotides CA264_18000: CA264_18000 - short-chain dehydrogenase, at 4,185,308 to 4,186,096 _18000 CA264_18005: CA264_18005 - 3-hydroxyanthranilate 3,4-dioxygenase, at 4,186,211 to 4,186,735 _18005 CA264_18010: CA264_18010 - 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase, at 4,187,085 to 4,188,122 _18010 CA264_18015: CA264_18015 - kynureninase, at 4,188,915 to 4,190,195 _18015 Position (kb) 4187 4188 4189Strain fitness (log2 ratio) -2 -1 0 1 2at 4186.102 kb on - strandat 4186.158 kb on + strandat 4186.188 kb on - strandat 4186.198 kb on + strandat 4186.198 kb on + strandat 4186.199 kb on - strandat 4186.210 kb on + strandat 4186.210 kb on + strandat 4186.211 kb on - strandat 4186.324 kb on - strand, within CA264_18005at 4186.329 kb on + strand, within CA264_18005at 4186.329 kb on + strand, within CA264_18005at 4186.342 kb on + strand, within CA264_18005at 4186.343 kb on - strand, within CA264_18005at 4186.405 kb on + strand, within CA264_18005at 4186.603 kb on - strand, within CA264_18005at 4186.603 kb on - strand, within CA264_18005at 4186.603 kb on - strand, within CA264_18005at 4186.603 kb on - strand, within CA264_18005at 4186.624 kb on - strand, within CA264_18005at 4186.624 kb on - strand, within CA264_18005at 4186.789 kb on + strandat 4186.790 kb on - strandat 4186.850 kb on - strandat 4186.870 kb on - strandat 4186.870 kb on - strandat 4186.871 kb on + strandat 4186.900 kb on - strandat 4186.919 kb on + strandat 4186.920 kb on - strandat 4186.920 kb on - strandat 4186.920 kb on - strandat 4186.926 kb on + strandat 4186.926 kb on + strandat 4186.953 kb on + strandat 4186.954 kb on - strandat 4186.954 kb on - strandat 4186.963 kb on + strandat 4186.984 kb on - strandat 4186.984 kb on - strandat 4186.986 kb on - strandat 4187.004 kb on - strandat 4187.019 kb on - strandat 4187.021 kb on - strandat 4187.021 kb on - strandat 4187.027 kb on - strandat 4187.041 kb on - strandat 4187.065 kb on + strandat 4187.066 kb on - strandat 4187.098 kb on + strandat 4187.098 kb on + strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.099 kb on - strandat 4187.213 kb on + strand, within CA264_18010at 4187.294 kb on - strand, within CA264_18010at 4187.324 kb on + strand, within CA264_18010at 4187.325 kb on - strand, within CA264_18010at 4187.329 kb on - strand, within CA264_18010at 4187.352 kb on + strand, within CA264_18010at 4187.352 kb on + strand, within CA264_18010at 4187.353 kb on - strand, within CA264_18010at 4187.353 kb on - strand, within CA264_18010at 4187.353 kb on - strand, within CA264_18010at 4187.506 kb on + strand, within CA264_18010at 4187.616 kb on - strand, within CA264_18010at 4187.643 kb on + strand, within CA264_18010at 4187.684 kb on + strand, within CA264_18010at 4187.685 kb on - strand, within CA264_18010at 4187.685 kb on - strand, within CA264_18010at 4187.685 kb on - strand, within CA264_18010at 4187.843 kb on - strand, within CA264_18010at 4187.857 kb on - strand, within CA264_18010at 4187.857 kb on - strand, within CA264_18010at 4187.871 kb on + strand, within CA264_18010at 4187.959 kb on - strand, within CA264_18010at 4188.013 kb on - strand, within CA264_18010at 4188.121 kb on - strandat 4188.134 kb on + strandat 4188.135 kb on - strandat 4188.136 kb on + strandat 4188.139 kb on + strandat 4188.140 kb on - strandat 4188.140 kb on - strandat 4188.187 kb on + strandat 4188.190 kb on + strandat 4188.190 kb on + strandat 4188.190 kb on + strandat 4188.190 kb on + strandat 4188.190 kb on + strandat 4188.191 kb on - strandat 4188.193 kb on - strandat 4188.324 kb on + strandat 4188.327 kb on + strandat 4188.328 kb on - strandat 4188.328 kb on - strandat 4188.328 kb on - strandat 4188.328 kb on - strandat 4188.328 kb on - strandat 4188.328 kb on - strandat 4188.387 kb on + strandat 4188.388 kb on - strandat 4188.395 kb on + strandat 4188.396 kb on - strandat 4188.396 kb on - strandat 4188.399 kb on + strandat 4188.399 kb on + strandat 4188.641 kb on - strandat 4188.641 kb on - strandat 4188.748 kb on - strandat 4188.751 kb on + strandat 4188.751 kb on + strandat 4188.752 kb on - strandat 4188.752 kb on - strandat 4188.754 kb on + strandat 4188.755 kb on - strandat 4188.854 kb on - strandat 4188.862 kb on - strandat 4188.921 kb on + strandat 4189.092 kb on + strand, within CA264_18015at 4189.093 kb on - strand, within CA264_18015at 4189.093 kb on - strand, within CA264_18015at 4189.093 kb on - strand, within CA264_18015at 4189.093 kb on - strand, within CA264_18015at 4189.094 kb on + strand, within CA264_18015at 4189.095 kb on - strand, within CA264_18015at 4189.095 kb on - strand, within CA264_18015

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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4,186,102 - -0.1
4,186,158 + -0.3
4,186,188 - -0.2
4,186,198 + +0.5
4,186,198 + +0.1
4,186,199 - +0.4
4,186,210 + +0.1
4,186,210 + -0.2
4,186,211 - +0.1
4,186,324 - CA264_18005 0.22 -0.0
4,186,329 + CA264_18005 0.22 +0.6
4,186,329 + CA264_18005 0.22 -0.4
4,186,342 + CA264_18005 0.25 -0.6
4,186,343 - CA264_18005 0.25 +0.8
4,186,405 + CA264_18005 0.37 +0.0
4,186,603 - CA264_18005 0.75 +0.5
4,186,603 - CA264_18005 0.75 -0.1
4,186,603 - CA264_18005 0.75 +0.0
4,186,603 - CA264_18005 0.75 -0.5
4,186,624 - CA264_18005 0.79 +1.4
4,186,624 - CA264_18005 0.79 -0.5
4,186,789 + -0.3
4,186,790 - -0.1
4,186,850 - -0.2
4,186,870 - +0.7
4,186,870 - +0.5
4,186,871 + -0.1
4,186,900 - +0.5
4,186,919 + +0.2
4,186,920 - -0.4
4,186,920 - +0.4
4,186,920 - +0.5
4,186,926 + -1.1
4,186,926 + +0.2
4,186,953 + -1.4
4,186,954 - +0.7
4,186,954 - +0.9
4,186,963 + -0.0
4,186,984 - -0.0
4,186,984 - +0.9
4,186,986 - -0.2
4,187,004 - +0.3
4,187,019 - +0.4
4,187,021 - +0.1
4,187,021 - +1.5
4,187,027 - +0.3
4,187,041 - -0.1
4,187,065 + -0.2
4,187,066 - +0.5
4,187,098 + +0.8
4,187,098 + +0.7
4,187,099 - -0.2
4,187,099 - -0.2
4,187,099 - +0.9
4,187,099 - -1.1
4,187,099 - -0.5
4,187,099 - -1.2
4,187,099 - +2.1
4,187,099 - -1.6
4,187,213 + CA264_18010 0.12 +0.4
4,187,294 - CA264_18010 0.20 -2.3
4,187,324 + CA264_18010 0.23 +0.7
4,187,325 - CA264_18010 0.23 -0.2
4,187,329 - CA264_18010 0.24 -0.6
4,187,352 + CA264_18010 0.26 +0.5
4,187,352 + CA264_18010 0.26 +0.0
4,187,353 - CA264_18010 0.26 -0.3
4,187,353 - CA264_18010 0.26 -0.4
4,187,353 - CA264_18010 0.26 -0.2
4,187,506 + CA264_18010 0.41 -0.8
4,187,616 - CA264_18010 0.51 -1.9
4,187,643 + CA264_18010 0.54 -0.0
4,187,684 + CA264_18010 0.58 +0.2
4,187,685 - CA264_18010 0.58 +0.1
4,187,685 - CA264_18010 0.58 -2.0
4,187,685 - CA264_18010 0.58 -0.9
4,187,843 - CA264_18010 0.73 -0.1
4,187,857 - CA264_18010 0.74 -1.0
4,187,857 - CA264_18010 0.74 -0.2
4,187,871 + CA264_18010 0.76 -0.5
4,187,959 - CA264_18010 0.84 +0.0
4,188,013 - CA264_18010 0.89 -0.4
4,188,121 - -0.6
4,188,134 + -1.1
4,188,135 - -0.6
4,188,136 + +0.1
4,188,139 + -0.1
4,188,140 - +0.0
4,188,140 - -0.6
4,188,187 + -0.5
4,188,190 + +0.2
4,188,190 + -0.2
4,188,190 + +0.7
4,188,190 + +0.4
4,188,190 + -0.2
4,188,191 - -2.0
4,188,193 - -0.9
4,188,324 + +0.0
4,188,327 + +0.1
4,188,328 - +0.7
4,188,328 - +1.2
4,188,328 - +0.2
4,188,328 - +1.8
4,188,328 - -0.2
4,188,328 - -0.4
4,188,387 + +1.5
4,188,388 - +1.8
4,188,395 + -0.6
4,188,396 - -0.9
4,188,396 - -1.2
4,188,399 + -0.8
4,188,399 + +0.1
4,188,641 - +0.1
4,188,641 - -0.2
4,188,748 - -0.2
4,188,751 + -0.7
4,188,751 + +0.3
4,188,752 - +0.3
4,188,752 - -0.3
4,188,754 + -1.1
4,188,755 - +0.5
4,188,854 - -0.5
4,188,862 - -0.1
4,188,921 + -0.2
4,189,092 + CA264_18015 0.14 +0.4
4,189,093 - CA264_18015 0.14 +0.1
4,189,093 - CA264_18015 0.14 -0.0
4,189,093 - CA264_18015 0.14 -0.1
4,189,093 - CA264_18015 0.14 -1.5
4,189,094 + CA264_18015 0.14 +0.8
4,189,095 - CA264_18015 0.14 +0.0
4,189,095 - CA264_18015 0.14 -0.8

Or see this region's nucleotide sequence