Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17930

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17925 and CA264_17930 are separated by 70 nucleotidesCA264_17930 and CA264_17935 are separated by 97 nucleotides CA264_17925: CA264_17925 - chromate transporter, at 4,166,731 to 4,167,903 _17925 CA264_17930: CA264_17930 - flavonol synthase, at 4,167,974 to 4,168,957 _17930 CA264_17935: CA264_17935 - hypothetical protein, at 4,169,055 to 4,169,897 _17935 Position (kb) 4167 4168 4169Strain fitness (log2 ratio) -1 0 1 2at 4167.016 kb on + strand, within CA264_17925at 4167.070 kb on - strand, within CA264_17925at 4167.073 kb on + strand, within CA264_17925at 4167.073 kb on + strand, within CA264_17925at 4167.073 kb on + strand, within CA264_17925at 4167.163 kb on - strand, within CA264_17925at 4167.286 kb on + strand, within CA264_17925at 4167.315 kb on - strand, within CA264_17925at 4167.408 kb on + strand, within CA264_17925at 4167.505 kb on + strand, within CA264_17925at 4167.519 kb on - strand, within CA264_17925at 4167.607 kb on - strand, within CA264_17925at 4167.607 kb on - strand, within CA264_17925at 4167.628 kb on - strand, within CA264_17925at 4167.669 kb on - strand, within CA264_17925at 4167.678 kb on + strand, within CA264_17925at 4167.693 kb on + strand, within CA264_17925at 4167.741 kb on + strand, within CA264_17925at 4167.741 kb on + strand, within CA264_17925at 4167.781 kb on - strand, within CA264_17925at 4167.866 kb on - strandat 4167.869 kb on - strandat 4167.886 kb on - strandat 4167.886 kb on - strandat 4167.886 kb on - strandat 4167.887 kb on + strandat 4167.888 kb on - strandat 4167.888 kb on - strandat 4168.018 kb on - strandat 4168.018 kb on - strandat 4168.084 kb on + strand, within CA264_17930at 4168.085 kb on - strand, within CA264_17930at 4168.217 kb on - strand, within CA264_17930at 4168.217 kb on - strand, within CA264_17930at 4168.224 kb on - strand, within CA264_17930at 4168.229 kb on + strand, within CA264_17930at 4168.236 kb on - strand, within CA264_17930at 4168.336 kb on + strand, within CA264_17930at 4168.337 kb on - strand, within CA264_17930at 4168.337 kb on - strand, within CA264_17930at 4168.402 kb on - strand, within CA264_17930at 4168.537 kb on + strand, within CA264_17930at 4168.584 kb on + strand, within CA264_17930at 4168.641 kb on + strand, within CA264_17930at 4168.734 kb on + strand, within CA264_17930at 4168.746 kb on - strand, within CA264_17930at 4168.785 kb on + strand, within CA264_17930at 4168.786 kb on - strand, within CA264_17930at 4168.959 kb on + strandat 4168.965 kb on + strandat 4168.971 kb on - strandat 4168.985 kb on + strandat 4169.020 kb on + strandat 4169.050 kb on - strandat 4169.053 kb on - strandat 4169.188 kb on + strand, within CA264_17935at 4169.188 kb on + strand, within CA264_17935at 4169.198 kb on - strand, within CA264_17935at 4169.324 kb on + strand, within CA264_17935at 4169.324 kb on + strand, within CA264_17935at 4169.325 kb on - strand, within CA264_17935at 4169.325 kb on - strand, within CA264_17935at 4169.337 kb on + strand, within CA264_17935at 4169.338 kb on - strand, within CA264_17935at 4169.385 kb on - strand, within CA264_17935at 4169.445 kb on + strand, within CA264_17935at 4169.612 kb on + strand, within CA264_17935at 4169.613 kb on - strand, within CA264_17935at 4169.613 kb on - strand, within CA264_17935at 4169.620 kb on - strand, within CA264_17935at 4169.620 kb on - strand, within CA264_17935at 4169.641 kb on - strand, within CA264_17935at 4169.747 kb on + strand, within CA264_17935at 4169.877 kb on - strandat 4169.877 kb on - strandat 4169.911 kb on - strandat 4169.911 kb on - strandat 4169.911 kb on - strandat 4169.916 kb on + strandat 4169.919 kb on - strandat 4169.925 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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4,167,016 + CA264_17925 0.24 +1.4
4,167,070 - CA264_17925 0.29 +0.5
4,167,073 + CA264_17925 0.29 +1.3
4,167,073 + CA264_17925 0.29 +0.4
4,167,073 + CA264_17925 0.29 +0.8
4,167,163 - CA264_17925 0.37 +0.2
4,167,286 + CA264_17925 0.47 +0.1
4,167,315 - CA264_17925 0.50 +0.5
4,167,408 + CA264_17925 0.58 +1.9
4,167,505 + CA264_17925 0.66 +1.7
4,167,519 - CA264_17925 0.67 +0.9
4,167,607 - CA264_17925 0.75 +0.6
4,167,607 - CA264_17925 0.75 +0.4
4,167,628 - CA264_17925 0.76 +1.1
4,167,669 - CA264_17925 0.80 +1.3
4,167,678 + CA264_17925 0.81 +1.5
4,167,693 + CA264_17925 0.82 +0.9
4,167,741 + CA264_17925 0.86 +0.7
4,167,741 + CA264_17925 0.86 +1.5
4,167,781 - CA264_17925 0.90 +1.1
4,167,866 - +0.6
4,167,869 - +1.2
4,167,886 - +1.6
4,167,886 - +0.0
4,167,886 - +0.9
4,167,887 + +0.0
4,167,888 - +0.7
4,167,888 - +0.1
4,168,018 - +0.4
4,168,018 - -0.5
4,168,084 + CA264_17930 0.11 -1.5
4,168,085 - CA264_17930 0.11 -0.3
4,168,217 - CA264_17930 0.25 -0.7
4,168,217 - CA264_17930 0.25 +0.0
4,168,224 - CA264_17930 0.25 -0.5
4,168,229 + CA264_17930 0.26 -0.5
4,168,236 - CA264_17930 0.27 +0.0
4,168,336 + CA264_17930 0.37 +0.1
4,168,337 - CA264_17930 0.37 +0.7
4,168,337 - CA264_17930 0.37 +0.1
4,168,402 - CA264_17930 0.43 +0.2
4,168,537 + CA264_17930 0.57 +0.4
4,168,584 + CA264_17930 0.62 -0.7
4,168,641 + CA264_17930 0.68 -1.3
4,168,734 + CA264_17930 0.77 -0.6
4,168,746 - CA264_17930 0.78 -0.5
4,168,785 + CA264_17930 0.82 -1.0
4,168,786 - CA264_17930 0.83 -0.9
4,168,959 + -0.3
4,168,965 + -0.9
4,168,971 - -0.2
4,168,985 + -0.4
4,169,020 + -0.2
4,169,050 - +0.5
4,169,053 - -0.3
4,169,188 + CA264_17935 0.16 +1.6
4,169,188 + CA264_17935 0.16 -0.6
4,169,198 - CA264_17935 0.17 +0.0
4,169,324 + CA264_17935 0.32 -0.0
4,169,324 + CA264_17935 0.32 -0.1
4,169,325 - CA264_17935 0.32 -0.3
4,169,325 - CA264_17935 0.32 +0.2
4,169,337 + CA264_17935 0.33 +0.8
4,169,338 - CA264_17935 0.34 +1.0
4,169,385 - CA264_17935 0.39 +1.1
4,169,445 + CA264_17935 0.46 -1.2
4,169,612 + CA264_17935 0.66 +0.5
4,169,613 - CA264_17935 0.66 -0.2
4,169,613 - CA264_17935 0.66 -0.6
4,169,620 - CA264_17935 0.67 -0.3
4,169,620 - CA264_17935 0.67 +0.2
4,169,641 - CA264_17935 0.70 +0.9
4,169,747 + CA264_17935 0.82 +0.7
4,169,877 - +0.2
4,169,877 - +1.2
4,169,911 - -0.2
4,169,911 - +0.6
4,169,911 - -0.6
4,169,916 + -0.0
4,169,919 - -0.3
4,169,925 + +0.9

Or see this region's nucleotide sequence