Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17835

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17825 and CA264_17830 are separated by 121 nucleotidesCA264_17830 and CA264_17835 are separated by 129 nucleotidesCA264_17835 and CA264_17840 are separated by 113 nucleotides CA264_17825: CA264_17825 - anhydro-N-acetylmuramic acid kinase, at 4,144,650 to 4,145,723 _17825 CA264_17830: CA264_17830 - transcriptional regulator, at 4,145,845 to 4,146,153 _17830 CA264_17835: CA264_17835 - glutamyl-tRNA reductase, at 4,146,283 to 4,147,566 _17835 CA264_17840: CA264_17840 - ATP-binding protein, at 4,147,680 to 4,148,861 _17840 Position (kb) 4146 4147 4148Strain fitness (log2 ratio) -2 -1 0 1 2at 4145.886 kb on + strand, within CA264_17830at 4145.930 kb on + strand, within CA264_17830at 4145.983 kb on + strand, within CA264_17830at 4145.983 kb on + strand, within CA264_17830at 4145.983 kb on + strand, within CA264_17830at 4145.983 kb on + strand, within CA264_17830at 4145.994 kb on - strand, within CA264_17830at 4146.030 kb on + strand, within CA264_17830at 4146.081 kb on - strand, within CA264_17830at 4146.082 kb on + strand, within CA264_17830at 4146.083 kb on - strand, within CA264_17830at 4146.083 kb on - strand, within CA264_17830at 4146.086 kb on - strand, within CA264_17830at 4146.151 kb on + strandat 4146.168 kb on + strandat 4146.218 kb on + strandat 4147.625 kb on - strandat 4147.636 kb on - strandat 4147.642 kb on - strandat 4147.642 kb on - strandat 4147.651 kb on + strandat 4147.692 kb on + strandat 4147.761 kb on - strandat 4147.761 kb on - strandat 4147.767 kb on - strandat 4147.769 kb on + strandat 4147.769 kb on + strandat 4147.774 kb on + strandat 4147.775 kb on - strandat 4147.775 kb on - strandat 4147.775 kb on - strandat 4147.775 kb on - strandat 4147.789 kb on + strandat 4147.821 kb on + strand, within CA264_17840at 4147.878 kb on - strand, within CA264_17840at 4147.943 kb on + strand, within CA264_17840at 4147.955 kb on + strand, within CA264_17840at 4147.967 kb on + strand, within CA264_17840at 4148.315 kb on + strand, within CA264_17840at 4148.496 kb on - strand, within CA264_17840at 4148.522 kb on + strand, within CA264_17840at 4148.523 kb on - strand, within CA264_17840at 4148.526 kb on - strand, within CA264_17840at 4148.536 kb on + strand, within CA264_17840

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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4,145,886 + CA264_17830 0.13 -0.8
4,145,930 + CA264_17830 0.28 -1.8
4,145,983 + CA264_17830 0.45 -0.6
4,145,983 + CA264_17830 0.45 +0.7
4,145,983 + CA264_17830 0.45 +0.6
4,145,983 + CA264_17830 0.45 +1.8
4,145,994 - CA264_17830 0.48 -0.5
4,146,030 + CA264_17830 0.60 +0.5
4,146,081 - CA264_17830 0.76 -0.8
4,146,082 + CA264_17830 0.77 +0.2
4,146,083 - CA264_17830 0.77 -0.4
4,146,083 - CA264_17830 0.77 +1.2
4,146,086 - CA264_17830 0.78 +1.2
4,146,151 + +0.3
4,146,168 + +1.2
4,146,218 + +0.3
4,147,625 - -0.4
4,147,636 - -0.2
4,147,642 - -0.3
4,147,642 - -0.5
4,147,651 + -0.3
4,147,692 + +0.4
4,147,761 - +0.3
4,147,761 - -2.1
4,147,767 - -0.3
4,147,769 + +0.1
4,147,769 + +1.2
4,147,774 + -1.2
4,147,775 - -0.2
4,147,775 - -0.2
4,147,775 - -0.3
4,147,775 - -0.0
4,147,789 + -0.2
4,147,821 + CA264_17840 0.12 -1.1
4,147,878 - CA264_17840 0.17 -0.3
4,147,943 + CA264_17840 0.22 -0.9
4,147,955 + CA264_17840 0.23 -0.8
4,147,967 + CA264_17840 0.24 +2.3
4,148,315 + CA264_17840 0.54 +1.8
4,148,496 - CA264_17840 0.69 -0.5
4,148,522 + CA264_17840 0.71 -2.7
4,148,523 - CA264_17840 0.71 +0.0
4,148,526 - CA264_17840 0.72 +1.6
4,148,536 + CA264_17840 0.72 +1.4

Or see this region's nucleotide sequence