Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16175

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16170 and CA264_16175 are separated by 288 nucleotidesCA264_16175 and CA264_16180 are separated by 366 nucleotides CA264_16170: CA264_16170 - hypothetical protein, at 3,764,670 to 3,765,293 _16170 CA264_16175: CA264_16175 - hypothetical protein, at 3,765,582 to 3,765,959 _16175 CA264_16180: CA264_16180 - SAM-dependent methyltransferase, at 3,766,326 to 3,766,970 _16180 Position (kb) 3765 3766Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3764.656 kb on + strandat 3764.656 kb on + strandat 3764.656 kb on + strandat 3764.695 kb on + strandat 3764.699 kb on - strandat 3764.707 kb on + strandat 3765.073 kb on + strand, within CA264_16170at 3765.073 kb on + strand, within CA264_16170at 3765.073 kb on + strand, within CA264_16170at 3765.073 kb on + strand, within CA264_16170at 3765.074 kb on - strand, within CA264_16170at 3765.076 kb on + strand, within CA264_16170at 3765.076 kb on + strand, within CA264_16170at 3765.077 kb on - strand, within CA264_16170at 3765.167 kb on - strand, within CA264_16170at 3765.176 kb on + strand, within CA264_16170at 3765.238 kb on + strandat 3765.239 kb on - strandat 3765.258 kb on + strandat 3765.276 kb on + strandat 3765.276 kb on + strandat 3765.300 kb on - strandat 3765.404 kb on + strandat 3765.405 kb on - strandat 3765.405 kb on - strandat 3765.405 kb on - strandat 3765.405 kb on - strandat 3765.430 kb on + strandat 3765.434 kb on + strandat 3765.440 kb on + strandat 3765.441 kb on - strandat 3765.444 kb on + strandat 3765.445 kb on - strandat 3765.526 kb on - strandat 3765.638 kb on + strand, within CA264_16175at 3765.674 kb on + strand, within CA264_16175at 3765.739 kb on + strand, within CA264_16175at 3765.746 kb on + strand, within CA264_16175at 3765.793 kb on - strand, within CA264_16175at 3765.822 kb on + strand, within CA264_16175at 3765.823 kb on - strand, within CA264_16175at 3765.842 kb on - strand, within CA264_16175at 3765.937 kb on + strandat 3765.937 kb on + strandat 3765.975 kb on + strandat 3765.976 kb on - strandat 3765.976 kb on - strandat 3765.976 kb on - strandat 3765.976 kb on - strandat 3765.976 kb on - strandat 3765.977 kb on + strandat 3765.977 kb on + strandat 3765.977 kb on + strandat 3765.978 kb on - strandat 3765.978 kb on - strandat 3765.978 kb on - strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.981 kb on + strandat 3766.004 kb on + strandat 3766.006 kb on + strandat 3766.045 kb on - strandat 3766.045 kb on - strandat 3766.045 kb on - strandat 3766.045 kb on - strandat 3766.061 kb on - strandat 3766.088 kb on - strandat 3766.088 kb on - strandat 3766.092 kb on + strandat 3766.093 kb on - strandat 3766.097 kb on + strandat 3766.097 kb on + strandat 3766.098 kb on - strandat 3766.098 kb on - strandat 3766.100 kb on - strandat 3766.169 kb on + strandat 3766.177 kb on - strandat 3766.238 kb on + strandat 3766.238 kb on + strandat 3766.251 kb on + strandat 3766.252 kb on - strandat 3766.259 kb on + strandat 3766.360 kb on - strandat 3766.393 kb on - strand, within CA264_16180at 3766.393 kb on - strand, within CA264_16180at 3766.413 kb on + strand, within CA264_16180at 3766.413 kb on + strand, within CA264_16180at 3766.431 kb on + strand, within CA264_16180at 3766.438 kb on + strand, within CA264_16180at 3766.483 kb on - strand, within CA264_16180at 3766.511 kb on + strand, within CA264_16180at 3766.511 kb on + strand, within CA264_16180at 3766.603 kb on + strand, within CA264_16180at 3766.700 kb on + strand, within CA264_16180at 3766.706 kb on + strand, within CA264_16180at 3766.722 kb on + strand, within CA264_16180at 3766.729 kb on - strand, within CA264_16180at 3766.783 kb on - strand, within CA264_16180at 3766.791 kb on + strand, within CA264_16180at 3766.849 kb on - strand, within CA264_16180at 3766.860 kb on - strand, within CA264_16180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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3,764,656 + -0.4
3,764,656 + -0.3
3,764,656 + +1.0
3,764,695 + -0.1
3,764,699 - +1.5
3,764,707 + -2.2
3,765,073 + CA264_16170 0.65 -0.2
3,765,073 + CA264_16170 0.65 -0.3
3,765,073 + CA264_16170 0.65 -0.3
3,765,073 + CA264_16170 0.65 -0.2
3,765,074 - CA264_16170 0.65 -0.2
3,765,076 + CA264_16170 0.65 -0.9
3,765,076 + CA264_16170 0.65 -0.7
3,765,077 - CA264_16170 0.65 -2.0
3,765,167 - CA264_16170 0.80 -0.6
3,765,176 + CA264_16170 0.81 -0.7
3,765,238 + -0.6
3,765,239 - -0.3
3,765,258 + -1.1
3,765,276 + -1.0
3,765,276 + +0.2
3,765,300 - -1.4
3,765,404 + -0.1
3,765,405 - -0.9
3,765,405 - -0.5
3,765,405 - +0.9
3,765,405 - +0.6
3,765,430 + +0.3
3,765,434 + +0.3
3,765,440 + -0.1
3,765,441 - -0.9
3,765,444 + -0.5
3,765,445 - +0.0
3,765,526 - -0.4
3,765,638 + CA264_16175 0.15 +2.9
3,765,674 + CA264_16175 0.24 +0.2
3,765,739 + CA264_16175 0.42 +0.1
3,765,746 + CA264_16175 0.43 +1.4
3,765,793 - CA264_16175 0.56 +0.2
3,765,822 + CA264_16175 0.63 +0.0
3,765,823 - CA264_16175 0.64 -0.3
3,765,842 - CA264_16175 0.69 +0.3
3,765,937 + +0.3
3,765,937 + -0.1
3,765,975 + -0.5
3,765,976 - +0.3
3,765,976 - +1.2
3,765,976 - -0.3
3,765,976 - +0.1
3,765,976 - +0.2
3,765,977 + +0.4
3,765,977 + -0.3
3,765,977 + -0.6
3,765,978 - +0.2
3,765,978 - +0.1
3,765,978 - +0.1
3,765,979 + -0.7
3,765,979 + -0.5
3,765,979 + +1.7
3,765,979 + -0.7
3,765,979 + -0.3
3,765,979 + -0.1
3,765,979 + -0.1
3,765,979 + -0.4
3,765,979 + -0.0
3,765,979 + +2.3
3,765,979 + -0.3
3,765,980 - -1.1
3,765,980 - +0.0
3,765,980 - +0.2
3,765,980 - +0.4
3,765,980 - -0.3
3,765,980 - +0.3
3,765,980 - +0.1
3,765,980 - +0.5
3,765,980 - +0.4
3,765,980 - +0.0
3,765,981 + +0.5
3,766,004 + -0.3
3,766,006 + -0.8
3,766,045 - -0.5
3,766,045 - +0.9
3,766,045 - +1.3
3,766,045 - +0.0
3,766,061 - -0.1
3,766,088 - -0.3
3,766,088 - +0.5
3,766,092 + -1.9
3,766,093 - -0.4
3,766,097 + +0.0
3,766,097 + -0.7
3,766,098 - +0.9
3,766,098 - +0.9
3,766,100 - +0.2
3,766,169 + +0.2
3,766,177 - -0.5
3,766,238 + -0.0
3,766,238 + -0.0
3,766,251 + -0.5
3,766,252 - +1.4
3,766,259 + -0.5
3,766,360 - -0.1
3,766,393 - CA264_16180 0.10 -0.1
3,766,393 - CA264_16180 0.10 +0.4
3,766,413 + CA264_16180 0.13 +0.3
3,766,413 + CA264_16180 0.13 -0.8
3,766,431 + CA264_16180 0.16 -0.9
3,766,438 + CA264_16180 0.17 +2.4
3,766,483 - CA264_16180 0.24 +0.1
3,766,511 + CA264_16180 0.29 -0.9
3,766,511 + CA264_16180 0.29 -0.4
3,766,603 + CA264_16180 0.43 -0.2
3,766,700 + CA264_16180 0.58 -0.5
3,766,706 + CA264_16180 0.59 -0.4
3,766,722 + CA264_16180 0.61 -0.5
3,766,729 - CA264_16180 0.62 -0.4
3,766,783 - CA264_16180 0.71 +0.1
3,766,791 + CA264_16180 0.72 -1.1
3,766,849 - CA264_16180 0.81 -0.6
3,766,860 - CA264_16180 0.83 -0.2

Or see this region's nucleotide sequence