Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15840

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15830 and CA264_15835 are separated by 25 nucleotidesCA264_15835 and CA264_15840 are separated by 162 nucleotidesCA264_15840 and CA264_15845 are separated by 198 nucleotidesCA264_15845 and CA264_15850 are separated by 186 nucleotides CA264_15830: CA264_15830 - hypothetical protein, at 3,694,447 to 3,697,494 _15830 CA264_15835: CA264_15835 - response regulator, at 3,697,520 to 3,697,927 _15835 CA264_15840: CA264_15840 - hypothetical protein, at 3,698,090 to 3,698,932 _15840 CA264_15845: CA264_15845 - hypothetical protein, at 3,699,131 to 3,699,583 _15845 CA264_15850: CA264_15850 - IclR family transcriptional regulator, at 3,699,770 to 3,700,348 _15850 Position (kb) 3698 3699Strain fitness (log2 ratio) -2 -1 0 1 2at 3697.179 kb on - strand, within CA264_15830at 3697.179 kb on - strand, within CA264_15830at 3697.183 kb on + strand, within CA264_15830at 3697.183 kb on + strand, within CA264_15830at 3697.183 kb on + strand, within CA264_15830at 3697.267 kb on + strandat 3697.267 kb on + strandat 3697.304 kb on + strandat 3697.304 kb on + strandat 3697.388 kb on - strandat 3697.466 kb on - strandat 3697.471 kb on + strandat 3697.499 kb on - strandat 3697.507 kb on - strandat 3697.564 kb on + strand, within CA264_15835at 3697.572 kb on - strand, within CA264_15835at 3697.617 kb on + strand, within CA264_15835at 3697.617 kb on + strand, within CA264_15835at 3697.653 kb on - strand, within CA264_15835at 3697.662 kb on - strand, within CA264_15835at 3697.715 kb on - strand, within CA264_15835at 3697.757 kb on + strand, within CA264_15835at 3697.807 kb on + strand, within CA264_15835at 3697.808 kb on - strand, within CA264_15835at 3697.808 kb on - strand, within CA264_15835at 3697.871 kb on + strand, within CA264_15835at 3697.872 kb on - strand, within CA264_15835at 3697.872 kb on - strand, within CA264_15835at 3697.908 kb on + strandat 3697.909 kb on - strandat 3697.919 kb on + strandat 3697.920 kb on - strandat 3697.920 kb on - strandat 3697.920 kb on - strandat 3697.925 kb on + strandat 3697.925 kb on + strandat 3697.926 kb on - strandat 3697.926 kb on - strandat 3698.007 kb on + strandat 3698.010 kb on - strandat 3698.031 kb on - strandat 3698.031 kb on - strandat 3698.058 kb on + strandat 3698.062 kb on + strandat 3698.062 kb on + strandat 3698.062 kb on + strandat 3698.083 kb on + strandat 3698.089 kb on + strandat 3698.090 kb on - strandat 3698.142 kb on + strandat 3698.297 kb on + strand, within CA264_15840at 3698.309 kb on + strand, within CA264_15840at 3698.310 kb on - strand, within CA264_15840at 3698.310 kb on - strand, within CA264_15840at 3698.412 kb on - strand, within CA264_15840at 3698.412 kb on - strand, within CA264_15840at 3698.412 kb on - strand, within CA264_15840at 3698.520 kb on + strand, within CA264_15840at 3698.520 kb on + strand, within CA264_15840at 3698.521 kb on - strand, within CA264_15840at 3698.521 kb on - strand, within CA264_15840at 3698.574 kb on - strand, within CA264_15840at 3698.589 kb on - strand, within CA264_15840at 3698.633 kb on + strand, within CA264_15840at 3698.894 kb on + strandat 3698.937 kb on + strandat 3698.939 kb on + strandat 3698.944 kb on - strandat 3698.968 kb on + strandat 3698.973 kb on + strandat 3698.974 kb on - strandat 3698.974 kb on - strandat 3699.020 kb on + strandat 3699.040 kb on - strandat 3699.044 kb on + strandat 3699.045 kb on - strandat 3699.079 kb on - strandat 3699.083 kb on + strandat 3699.115 kb on + strandat 3699.116 kb on - strandat 3699.266 kb on - strand, within CA264_15845at 3699.267 kb on + strand, within CA264_15845at 3699.408 kb on - strand, within CA264_15845at 3699.462 kb on + strand, within CA264_15845at 3699.572 kb on + strandat 3699.573 kb on - strandat 3699.751 kb on - strandat 3699.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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3,697,179 - CA264_15830 0.90 -1.2
3,697,179 - CA264_15830 0.90 +0.3
3,697,183 + CA264_15830 0.90 +0.7
3,697,183 + CA264_15830 0.90 +0.6
3,697,183 + CA264_15830 0.90 +1.1
3,697,267 + +0.8
3,697,267 + +0.7
3,697,304 + +0.1
3,697,304 + +0.9
3,697,388 - +1.1
3,697,466 - +0.2
3,697,471 + -0.3
3,697,499 - +0.4
3,697,507 - -0.3
3,697,564 + CA264_15835 0.11 +0.4
3,697,572 - CA264_15835 0.13 +1.0
3,697,617 + CA264_15835 0.24 -0.6
3,697,617 + CA264_15835 0.24 -0.3
3,697,653 - CA264_15835 0.33 -0.4
3,697,662 - CA264_15835 0.35 -0.6
3,697,715 - CA264_15835 0.48 -0.1
3,697,757 + CA264_15835 0.58 +1.0
3,697,807 + CA264_15835 0.70 +0.3
3,697,808 - CA264_15835 0.71 +0.8
3,697,808 - CA264_15835 0.71 +0.0
3,697,871 + CA264_15835 0.86 +0.4
3,697,872 - CA264_15835 0.86 -2.0
3,697,872 - CA264_15835 0.86 +0.4
3,697,908 + +0.2
3,697,909 - -0.3
3,697,919 + +0.5
3,697,920 - +0.0
3,697,920 - -1.0
3,697,920 - +1.4
3,697,925 + -0.3
3,697,925 + +1.1
3,697,926 - -1.4
3,697,926 - -0.4
3,698,007 + +0.1
3,698,010 - -0.4
3,698,031 - -0.4
3,698,031 - +1.4
3,698,058 + +1.2
3,698,062 + +0.4
3,698,062 + +0.5
3,698,062 + +1.1
3,698,083 + +0.6
3,698,089 + +0.4
3,698,090 - -0.6
3,698,142 + +0.3
3,698,297 + CA264_15840 0.25 -0.1
3,698,309 + CA264_15840 0.26 +0.0
3,698,310 - CA264_15840 0.26 -1.1
3,698,310 - CA264_15840 0.26 -0.0
3,698,412 - CA264_15840 0.38 +1.6
3,698,412 - CA264_15840 0.38 +0.7
3,698,412 - CA264_15840 0.38 +0.5
3,698,520 + CA264_15840 0.51 -0.1
3,698,520 + CA264_15840 0.51 +0.7
3,698,521 - CA264_15840 0.51 +0.1
3,698,521 - CA264_15840 0.51 -0.0
3,698,574 - CA264_15840 0.57 +1.9
3,698,589 - CA264_15840 0.59 -0.3
3,698,633 + CA264_15840 0.64 +1.5
3,698,894 + +0.1
3,698,937 + +1.9
3,698,939 + +1.0
3,698,944 - -1.0
3,698,968 + -0.2
3,698,973 + +0.2
3,698,974 - +0.0
3,698,974 - +0.1
3,699,020 + -1.2
3,699,040 - -0.5
3,699,044 + +0.4
3,699,045 - +0.2
3,699,079 - -0.3
3,699,083 + +0.1
3,699,115 + +1.3
3,699,116 - +0.1
3,699,266 - CA264_15845 0.30 -0.2
3,699,267 + CA264_15845 0.30 -0.5
3,699,408 - CA264_15845 0.61 -0.2
3,699,462 + CA264_15845 0.73 -0.5
3,699,572 + -0.1
3,699,573 - -0.5
3,699,751 - -0.8
3,699,751 - -0.1

Or see this region's nucleotide sequence