Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15400

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15395 and CA264_15400 are separated by 106 nucleotidesCA264_15400 and CA264_15405 are separated by 30 nucleotides CA264_15395: CA264_15395 - transcriptional regulator, at 3,607,557 to 3,607,928 _15395 CA264_15400: CA264_15400 - short-chain dehydrogenase, at 3,608,035 to 3,608,790 _15400 CA264_15405: CA264_15405 - oxidoreductase, at 3,608,821 to 3,609,816 _15405 Position (kb) 3608 3609Strain fitness (log2 ratio) -2 -1 0 1 2at 3607.046 kb on + strandat 3607.046 kb on + strandat 3607.047 kb on - strandat 3607.070 kb on + strandat 3607.090 kb on - strandat 3607.090 kb on - strandat 3607.104 kb on + strandat 3607.116 kb on - strandat 3607.122 kb on + strandat 3607.122 kb on + strandat 3607.123 kb on - strandat 3607.123 kb on - strandat 3607.146 kb on + strandat 3607.146 kb on + strandat 3607.157 kb on + strandat 3607.208 kb on + strandat 3607.208 kb on + strandat 3607.218 kb on + strandat 3607.218 kb on + strandat 3607.218 kb on + strandat 3607.238 kb on - strandat 3607.251 kb on + strandat 3607.252 kb on - strandat 3607.263 kb on - strandat 3607.273 kb on + strandat 3607.274 kb on - strandat 3607.286 kb on - strandat 3607.315 kb on + strandat 3607.341 kb on - strandat 3607.384 kb on - strandat 3607.396 kb on + strandat 3607.398 kb on + strandat 3607.398 kb on + strandat 3607.398 kb on + strandat 3607.399 kb on - strandat 3607.399 kb on - strandat 3607.399 kb on - strandat 3607.399 kb on - strandat 3607.402 kb on + strandat 3607.403 kb on - strandat 3607.403 kb on - strandat 3607.407 kb on + strandat 3607.426 kb on + strandat 3607.445 kb on - strandat 3607.477 kb on - strandat 3607.477 kb on - strandat 3607.516 kb on - strandat 3607.558 kb on + strandat 3607.558 kb on + strandat 3607.559 kb on - strandat 3607.602 kb on + strand, within CA264_15395at 3607.603 kb on - strand, within CA264_15395at 3607.625 kb on + strand, within CA264_15395at 3607.626 kb on - strand, within CA264_15395at 3607.626 kb on - strand, within CA264_15395at 3607.692 kb on + strand, within CA264_15395at 3607.817 kb on + strand, within CA264_15395at 3607.818 kb on - strand, within CA264_15395at 3607.934 kb on + strandat 3607.934 kb on + strandat 3607.935 kb on - strandat 3607.935 kb on - strandat 3607.942 kb on + strandat 3607.943 kb on - strandat 3607.953 kb on + strandat 3608.058 kb on - strandat 3608.063 kb on + strandat 3608.064 kb on - strandat 3608.087 kb on + strandat 3608.088 kb on - strandat 3608.097 kb on + strandat 3608.185 kb on - strand, within CA264_15400at 3608.187 kb on - strand, within CA264_15400at 3608.202 kb on + strand, within CA264_15400at 3608.203 kb on - strand, within CA264_15400at 3608.216 kb on + strand, within CA264_15400at 3608.217 kb on - strand, within CA264_15400at 3608.246 kb on + strand, within CA264_15400at 3608.247 kb on - strand, within CA264_15400at 3608.317 kb on + strand, within CA264_15400at 3608.324 kb on - strand, within CA264_15400at 3608.324 kb on - strand, within CA264_15400at 3608.353 kb on - strand, within CA264_15400at 3608.385 kb on - strand, within CA264_15400at 3608.393 kb on + strand, within CA264_15400at 3608.394 kb on - strand, within CA264_15400at 3608.497 kb on + strand, within CA264_15400at 3608.813 kb on + strandat 3608.850 kb on - strandat 3608.887 kb on - strandat 3608.894 kb on + strandat 3608.894 kb on + strandat 3608.895 kb on - strandat 3608.895 kb on - strandat 3608.912 kb on + strandat 3608.913 kb on - strandat 3608.920 kb on - strandat 3608.940 kb on - strand, within CA264_15405at 3609.005 kb on + strand, within CA264_15405at 3609.086 kb on + strand, within CA264_15405at 3609.087 kb on - strand, within CA264_15405at 3609.087 kb on - strand, within CA264_15405at 3609.087 kb on - strand, within CA264_15405at 3609.087 kb on - strand, within CA264_15405at 3609.090 kb on + strand, within CA264_15405at 3609.091 kb on - strand, within CA264_15405at 3609.163 kb on - strand, within CA264_15405at 3609.174 kb on + strand, within CA264_15405at 3609.232 kb on + strand, within CA264_15405at 3609.276 kb on + strand, within CA264_15405at 3609.276 kb on + strand, within CA264_15405at 3609.300 kb on - strand, within CA264_15405at 3609.300 kb on - strand, within CA264_15405at 3609.300 kb on - strand, within CA264_15405at 3609.308 kb on + strand, within CA264_15405at 3609.309 kb on - strand, within CA264_15405at 3609.309 kb on - strand, within CA264_15405at 3609.392 kb on - strand, within CA264_15405at 3609.447 kb on + strand, within CA264_15405at 3609.447 kb on + strand, within CA264_15405at 3609.469 kb on + strand, within CA264_15405at 3609.476 kb on + strand, within CA264_15405at 3609.492 kb on - strand, within CA264_15405at 3609.648 kb on - strand, within CA264_15405at 3609.671 kb on - strand, within CA264_15405at 3609.728 kb on + strandat 3609.728 kb on + strandat 3609.729 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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3,607,046 + -0.8
3,607,046 + +0.5
3,607,047 - -1.1
3,607,070 + -1.2
3,607,090 - +0.5
3,607,090 - +0.4
3,607,104 + -0.3
3,607,116 - +0.8
3,607,122 + +0.1
3,607,122 + +0.5
3,607,123 - +0.3
3,607,123 - -0.1
3,607,146 + +0.8
3,607,146 + -1.4
3,607,157 + -0.2
3,607,208 + +0.1
3,607,208 + -0.2
3,607,218 + -0.2
3,607,218 + +0.1
3,607,218 + -1.5
3,607,238 - -0.0
3,607,251 + -0.7
3,607,252 - +0.2
3,607,263 - +1.1
3,607,273 + +1.8
3,607,274 - +0.9
3,607,286 - -0.2
3,607,315 + -0.2
3,607,341 - -0.5
3,607,384 - -1.6
3,607,396 + +0.5
3,607,398 + +0.3
3,607,398 + -0.8
3,607,398 + -0.2
3,607,399 - -0.5
3,607,399 - +0.2
3,607,399 - -0.6
3,607,399 - -0.9
3,607,402 + +1.0
3,607,403 - -0.5
3,607,403 - -0.6
3,607,407 + -1.5
3,607,426 + -0.1
3,607,445 - -0.0
3,607,477 - -0.1
3,607,477 - -0.8
3,607,516 - +0.4
3,607,558 + -1.5
3,607,558 + -0.3
3,607,559 - -0.2
3,607,602 + CA264_15395 0.12 -0.0
3,607,603 - CA264_15395 0.12 -0.4
3,607,625 + CA264_15395 0.18 +0.1
3,607,626 - CA264_15395 0.19 -0.9
3,607,626 - CA264_15395 0.19 +0.8
3,607,692 + CA264_15395 0.36 -0.8
3,607,817 + CA264_15395 0.70 -1.4
3,607,818 - CA264_15395 0.70 -0.2
3,607,934 + -0.4
3,607,934 + -0.5
3,607,935 - -1.7
3,607,935 - +0.3
3,607,942 + +0.0
3,607,943 - -0.2
3,607,953 + -0.1
3,608,058 - +0.5
3,608,063 + +0.3
3,608,064 - +0.9
3,608,087 + +0.8
3,608,088 - +0.3
3,608,097 + -0.2
3,608,185 - CA264_15400 0.20 +0.1
3,608,187 - CA264_15400 0.20 +0.1
3,608,202 + CA264_15400 0.22 -0.2
3,608,203 - CA264_15400 0.22 +0.5
3,608,216 + CA264_15400 0.24 -0.6
3,608,217 - CA264_15400 0.24 +0.4
3,608,246 + CA264_15400 0.28 -0.6
3,608,247 - CA264_15400 0.28 -0.3
3,608,317 + CA264_15400 0.37 -0.8
3,608,324 - CA264_15400 0.38 +0.4
3,608,324 - CA264_15400 0.38 -0.0
3,608,353 - CA264_15400 0.42 -0.8
3,608,385 - CA264_15400 0.46 -1.7
3,608,393 + CA264_15400 0.47 +0.4
3,608,394 - CA264_15400 0.47 -1.1
3,608,497 + CA264_15400 0.61 +0.5
3,608,813 + -2.2
3,608,850 - -0.1
3,608,887 - -0.1
3,608,894 + -0.1
3,608,894 + -0.6
3,608,895 - -0.4
3,608,895 - -0.0
3,608,912 + -0.6
3,608,913 - +0.9
3,608,920 - -0.1
3,608,940 - CA264_15405 0.12 -1.2
3,609,005 + CA264_15405 0.18 +1.3
3,609,086 + CA264_15405 0.27 -0.3
3,609,087 - CA264_15405 0.27 +0.1
3,609,087 - CA264_15405 0.27 -0.6
3,609,087 - CA264_15405 0.27 -0.2
3,609,087 - CA264_15405 0.27 +0.1
3,609,090 + CA264_15405 0.27 -0.2
3,609,091 - CA264_15405 0.27 +0.0
3,609,163 - CA264_15405 0.34 -0.0
3,609,174 + CA264_15405 0.35 -1.3
3,609,232 + CA264_15405 0.41 -0.7
3,609,276 + CA264_15405 0.46 +0.1
3,609,276 + CA264_15405 0.46 -0.2
3,609,300 - CA264_15405 0.48 +0.1
3,609,300 - CA264_15405 0.48 -1.3
3,609,300 - CA264_15405 0.48 -0.5
3,609,308 + CA264_15405 0.49 +1.1
3,609,309 - CA264_15405 0.49 +0.1
3,609,309 - CA264_15405 0.49 -0.3
3,609,392 - CA264_15405 0.57 -1.1
3,609,447 + CA264_15405 0.63 +0.4
3,609,447 + CA264_15405 0.63 -0.2
3,609,469 + CA264_15405 0.65 -0.3
3,609,476 + CA264_15405 0.66 -0.5
3,609,492 - CA264_15405 0.67 -0.8
3,609,648 - CA264_15405 0.83 +0.6
3,609,671 - CA264_15405 0.85 +1.4
3,609,728 + -0.6
3,609,728 + +0.2
3,609,729 - +0.3

Or see this region's nucleotide sequence