Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14545

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14540 and CA264_14545 are separated by 0 nucleotidesCA264_14545 and CA264_14550 are separated by 72 nucleotides CA264_14540: CA264_14540 - NADP-dependent malic enzyme, at 3,411,501 to 3,413,771 _14540 CA264_14545: CA264_14545 - Holliday junction branch migration protein RuvA, at 3,413,772 to 3,414,362 _14545 CA264_14550: CA264_14550 - cell surface protein SprA, at 3,414,435 to 3,421,562 _14550 Position (kb) 3413 3414 3415Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3412.848 kb on + strand, within CA264_14540at 3412.856 kb on - strand, within CA264_14540at 3413.105 kb on + strand, within CA264_14540at 3413.195 kb on - strand, within CA264_14540at 3413.195 kb on - strand, within CA264_14540at 3413.233 kb on - strand, within CA264_14540at 3413.259 kb on + strand, within CA264_14540at 3413.260 kb on - strand, within CA264_14540at 3413.281 kb on + strand, within CA264_14540at 3413.382 kb on + strand, within CA264_14540at 3413.674 kb on + strandat 3413.752 kb on - strandat 3413.756 kb on + strandat 3413.757 kb on - strandat 3413.765 kb on + strandat 3413.765 kb on + strandat 3413.769 kb on + strandat 3414.367 kb on + strandat 3414.367 kb on + strandat 3414.367 kb on + strandat 3414.368 kb on - strandat 3414.368 kb on - strandat 3414.369 kb on + strandat 3414.370 kb on - strandat 3414.428 kb on + strandat 3414.428 kb on + strandat 3414.517 kb on + strandat 3414.517 kb on + strandat 3414.518 kb on - strandat 3414.518 kb on - strandat 3414.549 kb on + strandat 3414.549 kb on + strandat 3414.549 kb on + strandat 3414.550 kb on - strandat 3414.550 kb on - strandat 3414.550 kb on - strandat 3414.551 kb on + strandat 3414.637 kb on + strandat 3414.661 kb on + strandat 3414.661 kb on + strandat 3414.662 kb on - strandat 3414.696 kb on - strandat 3414.724 kb on + strandat 3414.724 kb on + strandat 3414.747 kb on - strandat 3414.910 kb on - strandat 3414.910 kb on - strandat 3414.913 kb on + strandat 3414.913 kb on + strandat 3414.992 kb on + strandat 3415.052 kb on + strandat 3415.082 kb on + strandat 3415.134 kb on + strandat 3415.135 kb on - strandat 3415.157 kb on + strand, within CA264_14550at 3415.157 kb on + strand, within CA264_14550at 3415.157 kb on + strand, within CA264_14550at 3415.159 kb on + strand, within CA264_14550at 3415.159 kb on + strand, within CA264_14550at 3415.159 kb on + strand, within CA264_14550at 3415.184 kb on - strand, within CA264_14550at 3415.237 kb on + strand, within CA264_14550

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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3,412,848 + CA264_14540 0.59 -0.9
3,412,856 - CA264_14540 0.60 -1.5
3,413,105 + CA264_14540 0.71 +0.1
3,413,195 - CA264_14540 0.75 +0.4
3,413,195 - CA264_14540 0.75 -1.8
3,413,233 - CA264_14540 0.76 -1.7
3,413,259 + CA264_14540 0.77 -0.2
3,413,260 - CA264_14540 0.77 -1.1
3,413,281 + CA264_14540 0.78 -0.6
3,413,382 + CA264_14540 0.83 -0.8
3,413,674 + -2.2
3,413,752 - -1.7
3,413,756 + -0.8
3,413,757 - +0.2
3,413,765 + +0.2
3,413,765 + +0.3
3,413,769 + -1.6
3,414,367 + -0.6
3,414,367 + -0.5
3,414,367 + +0.6
3,414,368 - +1.3
3,414,368 - +0.8
3,414,369 + +0.6
3,414,370 - -0.3
3,414,428 + +1.8
3,414,428 + +1.7
3,414,517 + +1.9
3,414,517 + +1.7
3,414,518 - +2.1
3,414,518 - +2.8
3,414,549 + +2.4
3,414,549 + +1.3
3,414,549 + +1.1
3,414,550 - +2.3
3,414,550 - +1.6
3,414,550 - +3.1
3,414,551 + +2.3
3,414,637 + +1.8
3,414,661 + +2.2
3,414,661 + +1.7
3,414,662 - +2.3
3,414,696 - +2.4
3,414,724 + +2.8
3,414,724 + +1.6
3,414,747 - +3.3
3,414,910 - +2.4
3,414,910 - +1.6
3,414,913 + -0.4
3,414,913 + +1.7
3,414,992 + +1.8
3,415,052 + +1.6
3,415,082 + +1.8
3,415,134 + +2.0
3,415,135 - +1.5
3,415,157 + CA264_14550 0.10 +2.1
3,415,157 + CA264_14550 0.10 +1.1
3,415,157 + CA264_14550 0.10 +1.1
3,415,159 + CA264_14550 0.10 +2.0
3,415,159 + CA264_14550 0.10 +1.5
3,415,159 + CA264_14550 0.10 +1.9
3,415,184 - CA264_14550 0.11 +3.4
3,415,237 + CA264_14550 0.11 +1.9

Or see this region's nucleotide sequence