Experiment: m.b. Cephalothin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13275 and CA264_13280 are separated by 84 nucleotides CA264_13280 and CA264_13285 are separated by 18 nucleotides
CA264_13275: CA264_13275 - malate dehydrogenase, at 3,092,258 to 3,093,196
_13275
CA264_13280: CA264_13280 - hypothetical protein, at 3,093,281 to 3,094,474
_13280
CA264_13285: CA264_13285 - hypothetical protein, at 3,094,493 to 3,097,087
_13285
Position (kb)
3093
3094
3095 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3093.259 kb on + strand at 3093.259 kb on + strand at 3093.277 kb on + strand at 3093.291 kb on - strand at 3093.310 kb on + strand at 3093.331 kb on + strand at 3093.352 kb on + strand at 3093.352 kb on + strand at 3093.354 kb on + strand at 3093.355 kb on - strand at 3093.405 kb on + strand, within CA264_13280 at 3093.429 kb on + strand, within CA264_13280 at 3093.429 kb on + strand, within CA264_13280 at 3093.475 kb on - strand, within CA264_13280 at 3093.475 kb on - strand, within CA264_13280 at 3093.515 kb on + strand, within CA264_13280 at 3093.515 kb on + strand, within CA264_13280 at 3093.520 kb on + strand, within CA264_13280 at 3093.536 kb on + strand, within CA264_13280 at 3093.538 kb on + strand, within CA264_13280 at 3093.606 kb on - strand, within CA264_13280 at 3093.629 kb on - strand, within CA264_13280 at 3093.633 kb on + strand, within CA264_13280 at 3093.634 kb on + strand, within CA264_13280 at 3093.634 kb on + strand, within CA264_13280 at 3093.634 kb on + strand, within CA264_13280 at 3093.635 kb on - strand, within CA264_13280 at 3093.638 kb on + strand, within CA264_13280 at 3093.639 kb on - strand, within CA264_13280 at 3093.700 kb on + strand, within CA264_13280 at 3093.701 kb on - strand, within CA264_13280 at 3093.758 kb on + strand, within CA264_13280 at 3093.759 kb on - strand, within CA264_13280 at 3093.857 kb on + strand, within CA264_13280 at 3093.857 kb on + strand, within CA264_13280 at 3093.880 kb on + strand, within CA264_13280 at 3093.880 kb on + strand, within CA264_13280 at 3093.881 kb on - strand, within CA264_13280 at 3093.881 kb on - strand, within CA264_13280 at 3094.047 kb on - strand, within CA264_13280 at 3094.157 kb on + strand, within CA264_13280 at 3094.158 kb on - strand, within CA264_13280 at 3094.261 kb on + strand, within CA264_13280 at 3094.261 kb on + strand, within CA264_13280 at 3094.330 kb on + strand, within CA264_13280 at 3094.330 kb on + strand, within CA264_13280 at 3094.331 kb on - strand, within CA264_13280 at 3094.331 kb on - strand, within CA264_13280 at 3094.383 kb on - strand at 3094.405 kb on + strand at 3094.405 kb on + strand at 3094.406 kb on - strand at 3094.412 kb on - strand at 3094.412 kb on - strand at 3094.463 kb on + strand at 3094.475 kb on + strand at 3094.476 kb on - strand at 3094.588 kb on - strand at 3094.588 kb on - strand at 3094.588 kb on - strand at 3094.588 kb on - strand at 3094.664 kb on - strand at 3094.727 kb on + strand at 3094.728 kb on - strand at 3094.744 kb on - strand at 3094.775 kb on - strand, within CA264_13285 at 3094.811 kb on + strand, within CA264_13285 at 3094.886 kb on + strand, within CA264_13285 at 3094.891 kb on + strand, within CA264_13285 at 3094.892 kb on - strand, within CA264_13285 at 3094.896 kb on + strand, within CA264_13285 at 3094.896 kb on + strand, within CA264_13285 at 3094.896 kb on + strand, within CA264_13285 at 3094.896 kb on + strand, within CA264_13285 at 3094.984 kb on + strand, within CA264_13285 at 3094.984 kb on + strand, within CA264_13285 at 3095.000 kb on + strand, within CA264_13285 at 3095.001 kb on - strand, within CA264_13285 at 3095.049 kb on + strand, within CA264_13285 at 3095.049 kb on + strand, within CA264_13285 at 3095.052 kb on + strand, within CA264_13285 at 3095.053 kb on - strand, within CA264_13285 at 3095.053 kb on - strand, within CA264_13285 at 3095.053 kb on - strand, within CA264_13285 at 3095.094 kb on + strand, within CA264_13285 at 3095.094 kb on + strand, within CA264_13285 at 3095.095 kb on - strand, within CA264_13285 at 3095.095 kb on - strand, within CA264_13285 at 3095.103 kb on - strand, within CA264_13285 at 3095.155 kb on + strand, within CA264_13285 at 3095.163 kb on + strand, within CA264_13285 at 3095.164 kb on - strand, within CA264_13285 at 3095.164 kb on - strand, within CA264_13285 at 3095.223 kb on + strand, within CA264_13285 at 3095.239 kb on - strand, within CA264_13285 at 3095.252 kb on - strand, within CA264_13285 at 3095.308 kb on + strand, within CA264_13285 at 3095.346 kb on + strand, within CA264_13285 at 3095.346 kb on + strand, within CA264_13285 at 3095.379 kb on + strand, within CA264_13285 at 3095.380 kb on - strand, within CA264_13285 at 3095.380 kb on - strand, within CA264_13285 at 3095.417 kb on + strand, within CA264_13285 at 3095.417 kb on + strand, within CA264_13285 at 3095.442 kb on + strand, within CA264_13285 at 3095.443 kb on - strand, within CA264_13285
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml remove 3,093,259 + +0.2 3,093,259 + +0.3 3,093,277 + +0.2 3,093,291 - +0.2 3,093,310 + -0.3 3,093,331 + -0.0 3,093,352 + +0.4 3,093,352 + +0.8 3,093,354 + +0.2 3,093,355 - +0.2 3,093,405 + CA264_13280 0.10 +0.2 3,093,429 + CA264_13280 0.12 +0.1 3,093,429 + CA264_13280 0.12 +0.8 3,093,475 - CA264_13280 0.16 -2.5 3,093,475 - CA264_13280 0.16 +0.2 3,093,515 + CA264_13280 0.20 +0.0 3,093,515 + CA264_13280 0.20 -0.1 3,093,520 + CA264_13280 0.20 -1.3 3,093,536 + CA264_13280 0.21 -0.3 3,093,538 + CA264_13280 0.22 +0.1 3,093,606 - CA264_13280 0.27 +0.4 3,093,629 - CA264_13280 0.29 +1.2 3,093,633 + CA264_13280 0.29 -0.3 3,093,634 + CA264_13280 0.30 -0.1 3,093,634 + CA264_13280 0.30 -0.5 3,093,634 + CA264_13280 0.30 +2.7 3,093,635 - CA264_13280 0.30 -0.4 3,093,638 + CA264_13280 0.30 +0.8 3,093,639 - CA264_13280 0.30 -0.3 3,093,700 + CA264_13280 0.35 +0.5 3,093,701 - CA264_13280 0.35 +0.4 3,093,758 + CA264_13280 0.40 +1.4 3,093,759 - CA264_13280 0.40 +0.5 3,093,857 + CA264_13280 0.48 +1.2 3,093,857 + CA264_13280 0.48 -0.2 3,093,880 + CA264_13280 0.50 -0.3 3,093,880 + CA264_13280 0.50 -0.2 3,093,881 - CA264_13280 0.50 +0.9 3,093,881 - CA264_13280 0.50 -1.3 3,094,047 - CA264_13280 0.64 +1.0 3,094,157 + CA264_13280 0.73 +0.1 3,094,158 - CA264_13280 0.73 -0.3 3,094,261 + CA264_13280 0.82 -1.2 3,094,261 + CA264_13280 0.82 -0.3 3,094,330 + CA264_13280 0.88 -0.2 3,094,330 + CA264_13280 0.88 +0.2 3,094,331 - CA264_13280 0.88 -0.1 3,094,331 - CA264_13280 0.88 -0.2 3,094,383 - +0.5 3,094,405 + -0.1 3,094,405 + -0.7 3,094,406 - +0.6 3,094,412 - -1.1 3,094,412 - -3.5 3,094,463 + +0.0 3,094,475 + +0.9 3,094,476 - -0.4 3,094,588 - -0.4 3,094,588 - -0.4 3,094,588 - +1.3 3,094,588 - +0.4 3,094,664 - -1.3 3,094,727 + -0.4 3,094,728 - +1.1 3,094,744 - -1.2 3,094,775 - CA264_13285 0.11 -0.3 3,094,811 + CA264_13285 0.12 +0.1 3,094,886 + CA264_13285 0.15 -0.3 3,094,891 + CA264_13285 0.15 -0.3 3,094,892 - CA264_13285 0.15 -1.1 3,094,896 + CA264_13285 0.16 -0.1 3,094,896 + CA264_13285 0.16 +0.4 3,094,896 + CA264_13285 0.16 +0.3 3,094,896 + CA264_13285 0.16 +0.2 3,094,984 + CA264_13285 0.19 +0.3 3,094,984 + CA264_13285 0.19 -2.1 3,095,000 + CA264_13285 0.20 +0.2 3,095,001 - CA264_13285 0.20 -0.0 3,095,049 + CA264_13285 0.21 +0.4 3,095,049 + CA264_13285 0.21 -0.4 3,095,052 + CA264_13285 0.22 +0.6 3,095,053 - CA264_13285 0.22 +0.4 3,095,053 - CA264_13285 0.22 +0.4 3,095,053 - CA264_13285 0.22 -1.1 3,095,094 + CA264_13285 0.23 -0.1 3,095,094 + CA264_13285 0.23 +0.1 3,095,095 - CA264_13285 0.23 -1.3 3,095,095 - CA264_13285 0.23 +0.8 3,095,103 - CA264_13285 0.24 +0.4 3,095,155 + CA264_13285 0.26 -0.5 3,095,163 + CA264_13285 0.26 -0.4 3,095,164 - CA264_13285 0.26 -0.7 3,095,164 - CA264_13285 0.26 -0.5 3,095,223 + CA264_13285 0.28 +0.0 3,095,239 - CA264_13285 0.29 -0.3 3,095,252 - CA264_13285 0.29 -0.7 3,095,308 + CA264_13285 0.31 -0.5 3,095,346 + CA264_13285 0.33 +0.2 3,095,346 + CA264_13285 0.33 -0.1 3,095,379 + CA264_13285 0.34 -0.8 3,095,380 - CA264_13285 0.34 -0.3 3,095,380 - CA264_13285 0.34 -0.3 3,095,417 + CA264_13285 0.36 +0.9 3,095,417 + CA264_13285 0.36 -0.0 3,095,442 + CA264_13285 0.37 -0.7 3,095,443 - CA264_13285 0.37 -1.0
Or see this region's nucleotide sequence