Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12505

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12500 and CA264_12505 overlap by 4 nucleotidesCA264_12505 and CA264_12510 overlap by 11 nucleotidesCA264_12510 and CA264_12515 are separated by 360 nucleotides CA264_12500: CA264_12500 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 2,911,113 to 2,912,507 _12500 CA264_12505: CA264_12505 - acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase, at 2,912,504 to 2,913,295 _12505 CA264_12510: CA264_12510 - ABC transporter ATP-binding protein, at 2,913,285 to 2,913,917 _12510 CA264_12515: CA264_12515 - YebC/PmpR family DNA-binding transcriptional regulator, at 2,914,278 to 2,914,985 _12515 Position (kb) 2912 2913 2914Strain fitness (log2 ratio) -2 -1 0 1at 2912.491 kb on + strandat 2912.518 kb on - strandat 2912.527 kb on - strandat 2913.915 kb on + strandat 2913.943 kb on + strandat 2913.943 kb on + strandat 2913.972 kb on + strandat 2913.972 kb on + strandat 2913.973 kb on - strandat 2913.973 kb on - strandat 2913.979 kb on - strandat 2914.004 kb on - strandat 2914.023 kb on + strandat 2914.049 kb on + strandat 2914.070 kb on - strandat 2914.070 kb on - strandat 2914.127 kb on + strandat 2914.145 kb on + strandat 2914.145 kb on + strandat 2914.146 kb on - strandat 2914.149 kb on + strandat 2914.227 kb on - strandat 2914.235 kb on - strandat 2914.277 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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2,912,491 + +0.1
2,912,518 - +0.1
2,912,527 - +1.1
2,913,915 + +1.1
2,913,943 + -0.7
2,913,943 + -0.5
2,913,972 + +0.8
2,913,972 + +0.7
2,913,973 - +0.7
2,913,973 - -1.8
2,913,979 - -0.9
2,914,004 - -1.1
2,914,023 + +1.1
2,914,049 + +0.3
2,914,070 - -1.4
2,914,070 - -1.4
2,914,127 + -0.1
2,914,145 + -1.9
2,914,145 + +0.2
2,914,146 - -0.9
2,914,149 + -0.7
2,914,227 - -0.6
2,914,235 - +1.5
2,914,277 + +0.7

Or see this region's nucleotide sequence