Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12310

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12305 and CA264_12310 are separated by 5 nucleotidesCA264_12310 and CA264_12315 are separated by 204 nucleotides CA264_12305: CA264_12305 - MRP family ATP-binding protein, at 2,867,485 to 2,868,588 _12305 CA264_12310: CA264_12310 - NifU family protein, at 2,868,594 to 2,868,863 _12310 CA264_12315: CA264_12315 - fumarylacetoacetase, at 2,869,068 to 2,870,339 _12315 Position (kb) 2868 2869Strain fitness (log2 ratio) -1 0 1 2at 2868.579 kb on + strandat 2868.592 kb on - strandat 2868.704 kb on - strand, within CA264_12310at 2868.704 kb on - strand, within CA264_12310at 2868.878 kb on + strandat 2868.879 kb on - strandat 2868.883 kb on + strandat 2868.884 kb on - strandat 2868.884 kb on - strandat 2868.899 kb on + strandat 2868.928 kb on + strandat 2869.012 kb on - strandat 2869.041 kb on + strandat 2869.042 kb on - strandat 2869.072 kb on + strandat 2869.072 kb on + strandat 2869.111 kb on + strandat 2869.111 kb on + strandat 2869.111 kb on + strandat 2869.206 kb on + strand, within CA264_12315at 2869.207 kb on - strand, within CA264_12315at 2869.207 kb on - strand, within CA264_12315at 2869.255 kb on + strand, within CA264_12315at 2869.448 kb on - strand, within CA264_12315at 2869.524 kb on - strand, within CA264_12315at 2869.567 kb on - strand, within CA264_12315at 2869.609 kb on + strand, within CA264_12315at 2869.610 kb on - strand, within CA264_12315at 2869.763 kb on + strand, within CA264_12315at 2869.822 kb on - strand, within CA264_12315

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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2,868,579 + -0.3
2,868,592 - -0.7
2,868,704 - CA264_12310 0.41 -1.7
2,868,704 - CA264_12310 0.41 -0.1
2,868,878 + -0.2
2,868,879 - -0.3
2,868,883 + +0.4
2,868,884 - +0.8
2,868,884 - -0.6
2,868,899 + +0.3
2,868,928 + -0.1
2,869,012 - +0.4
2,869,041 + +0.0
2,869,042 - +1.5
2,869,072 + -0.6
2,869,072 + +0.7
2,869,111 + -0.7
2,869,111 + -0.0
2,869,111 + +0.4
2,869,206 + CA264_12315 0.11 +0.3
2,869,207 - CA264_12315 0.11 +0.7
2,869,207 - CA264_12315 0.11 +1.0
2,869,255 + CA264_12315 0.15 +0.3
2,869,448 - CA264_12315 0.30 -0.2
2,869,524 - CA264_12315 0.36 -0.5
2,869,567 - CA264_12315 0.39 +1.8
2,869,609 + CA264_12315 0.43 +1.7
2,869,610 - CA264_12315 0.43 +1.0
2,869,763 + CA264_12315 0.55 -0.5
2,869,822 - CA264_12315 0.59 +0.2

Or see this region's nucleotide sequence