Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10975

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10970 and CA264_10975 are separated by 266 nucleotidesCA264_10975 and CA264_10980 are separated by 54 nucleotidesCA264_10980 and CA264_10985 are separated by 79 nucleotides CA264_10970: CA264_10970 - ferredoxin, at 2,530,188 to 2,531,276 _10970 CA264_10975: CA264_10975 - Pathogenesis-related transcriptional factor and ERF protein, at 2,531,543 to 2,532,112 _10975 CA264_10980: CA264_10980 - peptidase M23, at 2,532,167 to 2,532,883 _10980 CA264_10985: CA264_10985 - mechanosensitive ion channel protein MscS, at 2,532,963 to 2,533,805 _10985 Position (kb) 2531 2532 2533Strain fitness (log2 ratio) -2 -1 0 1at 2530.636 kb on + strand, within CA264_10970at 2530.636 kb on + strand, within CA264_10970at 2530.637 kb on - strand, within CA264_10970at 2530.639 kb on + strand, within CA264_10970at 2530.639 kb on + strand, within CA264_10970at 2530.639 kb on + strand, within CA264_10970at 2530.640 kb on - strand, within CA264_10970at 2530.695 kb on - strand, within CA264_10970at 2530.695 kb on - strand, within CA264_10970at 2530.744 kb on + strand, within CA264_10970at 2530.745 kb on - strand, within CA264_10970at 2530.745 kb on - strand, within CA264_10970at 2530.751 kb on - strand, within CA264_10970at 2530.774 kb on + strand, within CA264_10970at 2530.811 kb on + strand, within CA264_10970at 2530.811 kb on + strand, within CA264_10970at 2530.837 kb on + strand, within CA264_10970at 2531.008 kb on - strand, within CA264_10970at 2531.029 kb on + strand, within CA264_10970at 2531.029 kb on + strand, within CA264_10970at 2531.030 kb on - strand, within CA264_10970at 2531.061 kb on + strand, within CA264_10970at 2531.062 kb on - strand, within CA264_10970at 2531.149 kb on - strand, within CA264_10970at 2531.244 kb on + strandat 2531.258 kb on + strandat 2531.259 kb on - strandat 2531.270 kb on + strandat 2531.271 kb on - strandat 2531.301 kb on - strandat 2531.301 kb on - strandat 2531.301 kb on - strandat 2531.311 kb on - strandat 2531.341 kb on - strandat 2531.364 kb on - strandat 2531.469 kb on + strandat 2531.498 kb on + strandat 2531.498 kb on + strandat 2531.509 kb on - strandat 2531.511 kb on + strandat 2531.529 kb on - strandat 2531.599 kb on + strandat 2531.609 kb on + strand, within CA264_10975at 2531.738 kb on + strand, within CA264_10975at 2531.802 kb on + strand, within CA264_10975at 2531.803 kb on - strand, within CA264_10975at 2531.939 kb on + strand, within CA264_10975at 2531.957 kb on + strand, within CA264_10975at 2531.958 kb on - strand, within CA264_10975at 2531.997 kb on + strand, within CA264_10975at 2532.018 kb on - strand, within CA264_10975at 2532.166 kb on + strandat 2532.166 kb on + strandat 2532.167 kb on - strandat 2532.568 kb on + strand, within CA264_10980at 2532.602 kb on + strand, within CA264_10980at 2532.603 kb on - strand, within CA264_10980at 2532.611 kb on + strand, within CA264_10980at 2532.612 kb on - strand, within CA264_10980at 2532.742 kb on + strand, within CA264_10980at 2532.744 kb on + strand, within CA264_10980at 2532.744 kb on + strand, within CA264_10980at 2532.809 kb on + strand, within CA264_10980at 2532.809 kb on + strand, within CA264_10980at 2532.810 kb on - strand, within CA264_10980at 2532.881 kb on + strandat 2532.951 kb on + strandat 2532.957 kb on - strandat 2533.015 kb on - strandat 2533.015 kb on - strandat 2533.079 kb on - strand, within CA264_10985at 2533.079 kb on - strand, within CA264_10985at 2533.091 kb on - strand, within CA264_10985

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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2,530,636 + CA264_10970 0.41 +0.9
2,530,636 + CA264_10970 0.41 +0.1
2,530,637 - CA264_10970 0.41 +1.4
2,530,639 + CA264_10970 0.41 +1.2
2,530,639 + CA264_10970 0.41 +0.7
2,530,639 + CA264_10970 0.41 +0.9
2,530,640 - CA264_10970 0.42 +1.0
2,530,695 - CA264_10970 0.47 +0.9
2,530,695 - CA264_10970 0.47 +1.7
2,530,744 + CA264_10970 0.51 +0.4
2,530,745 - CA264_10970 0.51 +1.2
2,530,745 - CA264_10970 0.51 +0.0
2,530,751 - CA264_10970 0.52 +1.1
2,530,774 + CA264_10970 0.54 +1.0
2,530,811 + CA264_10970 0.57 +0.9
2,530,811 + CA264_10970 0.57 -0.2
2,530,837 + CA264_10970 0.60 +0.9
2,531,008 - CA264_10970 0.75 +0.6
2,531,029 + CA264_10970 0.77 -0.3
2,531,029 + CA264_10970 0.77 +0.7
2,531,030 - CA264_10970 0.77 +0.6
2,531,061 + CA264_10970 0.80 +0.5
2,531,062 - CA264_10970 0.80 +1.2
2,531,149 - CA264_10970 0.88 +1.0
2,531,244 + +0.6
2,531,258 + +0.5
2,531,259 - +1.3
2,531,270 + +0.3
2,531,271 - +0.6
2,531,301 - +0.9
2,531,301 - +1.5
2,531,301 - +0.5
2,531,311 - +1.1
2,531,341 - +0.8
2,531,364 - +0.5
2,531,469 + +1.4
2,531,498 + +0.9
2,531,498 + +1.5
2,531,509 - +0.7
2,531,511 + -0.7
2,531,529 - +0.7
2,531,599 + -1.8
2,531,609 + CA264_10975 0.12 -1.0
2,531,738 + CA264_10975 0.34 -1.0
2,531,802 + CA264_10975 0.45 -1.7
2,531,803 - CA264_10975 0.46 -0.8
2,531,939 + CA264_10975 0.69 +0.1
2,531,957 + CA264_10975 0.73 -0.8
2,531,958 - CA264_10975 0.73 -0.4
2,531,997 + CA264_10975 0.80 -0.3
2,532,018 - CA264_10975 0.83 -1.0
2,532,166 + +0.1
2,532,166 + -0.0
2,532,167 - +0.6
2,532,568 + CA264_10980 0.56 -0.8
2,532,602 + CA264_10980 0.61 +0.5
2,532,603 - CA264_10980 0.61 +0.7
2,532,611 + CA264_10980 0.62 +0.7
2,532,612 - CA264_10980 0.62 +1.0
2,532,742 + CA264_10980 0.80 -0.3
2,532,744 + CA264_10980 0.80 +0.0
2,532,744 + CA264_10980 0.80 +1.0
2,532,809 + CA264_10980 0.90 -0.9
2,532,809 + CA264_10980 0.90 -0.8
2,532,810 - CA264_10980 0.90 -0.3
2,532,881 + -1.5
2,532,951 + -1.2
2,532,957 - -0.8
2,533,015 - -1.1
2,533,015 - -0.6
2,533,079 - CA264_10985 0.14 +0.8
2,533,079 - CA264_10985 0.14 +0.8
2,533,091 - CA264_10985 0.15 -0.4

Or see this region's nucleotide sequence