Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09910

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09905 and CA264_09910 are separated by 191 nucleotidesCA264_09910 and CA264_09915 are separated by 342 nucleotidesCA264_09915 and CA264_09920 overlap by 139 nucleotides CA264_09905: CA264_09905 - hypothetical protein, at 2,309,582 to 2,310,607 _09905 CA264_09910: CA264_09910 - hypothetical protein, at 2,310,799 to 2,311,374 _09910 CA264_09915: CA264_09915 - hypothetical protein, at 2,311,717 to 2,311,902 _09915 CA264_09920: CA264_09920 - IS5/IS1182 family transposase, at 2,311,764 to 2,312,237 _09920 Position (kb) 2310 2311 2312Strain fitness (log2 ratio) -2 -1 0 1 2at 2309.810 kb on + strand, within CA264_09905at 2309.890 kb on + strand, within CA264_09905at 2309.891 kb on - strand, within CA264_09905at 2309.891 kb on - strand, within CA264_09905at 2309.891 kb on - strand, within CA264_09905at 2309.917 kb on + strand, within CA264_09905at 2310.036 kb on - strand, within CA264_09905at 2310.036 kb on - strand, within CA264_09905at 2310.039 kb on - strand, within CA264_09905at 2310.039 kb on - strand, within CA264_09905at 2310.039 kb on - strand, within CA264_09905at 2310.085 kb on + strand, within CA264_09905at 2310.085 kb on + strand, within CA264_09905at 2310.096 kb on - strand, within CA264_09905at 2310.159 kb on + strand, within CA264_09905at 2310.159 kb on + strand, within CA264_09905at 2310.160 kb on - strand, within CA264_09905at 2310.160 kb on - strand, within CA264_09905at 2310.160 kb on - strand, within CA264_09905at 2310.172 kb on + strand, within CA264_09905at 2310.188 kb on + strand, within CA264_09905at 2310.234 kb on - strand, within CA264_09905at 2310.317 kb on + strand, within CA264_09905at 2310.318 kb on - strand, within CA264_09905at 2310.318 kb on - strand, within CA264_09905at 2310.330 kb on - strand, within CA264_09905at 2310.587 kb on + strandat 2310.587 kb on + strandat 2310.588 kb on - strandat 2310.588 kb on - strandat 2310.592 kb on + strandat 2310.592 kb on + strandat 2310.592 kb on + strandat 2310.592 kb on + strandat 2310.593 kb on - strandat 2310.663 kb on - strandat 2310.681 kb on - strandat 2310.697 kb on + strandat 2310.795 kb on + strandat 2310.800 kb on + strandat 2310.800 kb on + strandat 2310.800 kb on + strandat 2310.806 kb on - strandat 2310.806 kb on - strandat 2310.910 kb on - strand, within CA264_09910at 2310.913 kb on + strand, within CA264_09910at 2310.918 kb on - strand, within CA264_09910at 2311.096 kb on - strand, within CA264_09910at 2311.098 kb on - strand, within CA264_09910at 2311.098 kb on - strand, within CA264_09910at 2311.108 kb on - strand, within CA264_09910at 2311.109 kb on + strand, within CA264_09910at 2311.146 kb on - strand, within CA264_09910at 2311.146 kb on - strand, within CA264_09910at 2311.172 kb on - strand, within CA264_09910at 2311.197 kb on + strand, within CA264_09910at 2311.198 kb on - strand, within CA264_09910at 2311.374 kb on + strandat 2311.374 kb on + strandat 2311.374 kb on + strandat 2311.375 kb on - strandat 2311.375 kb on - strandat 2311.375 kb on - strandat 2311.375 kb on - strandat 2311.375 kb on - strandat 2311.375 kb on - strandat 2311.378 kb on + strandat 2311.378 kb on + strandat 2311.379 kb on - strandat 2311.414 kb on + strandat 2311.414 kb on + strandat 2311.415 kb on - strandat 2311.452 kb on + strandat 2311.453 kb on - strandat 2311.567 kb on + strandat 2311.568 kb on - strandat 2311.568 kb on - strandat 2311.568 kb on - strandat 2311.568 kb on - strandat 2311.568 kb on - strandat 2311.568 kb on - strandat 2311.568 kb on - strandat 2311.606 kb on + strandat 2311.638 kb on - strandat 2311.670 kb on - strandat 2311.688 kb on + strandat 2311.743 kb on + strand, within CA264_09915at 2311.743 kb on + strand, within CA264_09915at 2311.743 kb on + strand, within CA264_09915at 2311.744 kb on - strand, within CA264_09915at 2311.744 kb on - strand, within CA264_09915at 2311.744 kb on - strand, within CA264_09915at 2311.796 kb on + strandat 2311.818 kb on - strandat 2311.888 kb on - strandat 2312.026 kb on + strand, within CA264_09920at 2312.067 kb on + strand, within CA264_09920at 2312.068 kb on - strand, within CA264_09920at 2312.299 kb on + strandat 2312.300 kb on - strandat 2312.300 kb on - strandat 2312.300 kb on - strandat 2312.302 kb on + strandat 2312.303 kb on - strandat 2312.303 kb on - strandat 2312.305 kb on + strandat 2312.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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2,309,810 + CA264_09905 0.22 +0.7
2,309,890 + CA264_09905 0.30 +0.2
2,309,891 - CA264_09905 0.30 +0.8
2,309,891 - CA264_09905 0.30 +0.7
2,309,891 - CA264_09905 0.30 +0.5
2,309,917 + CA264_09905 0.33 -0.3
2,310,036 - CA264_09905 0.44 +0.6
2,310,036 - CA264_09905 0.44 +0.7
2,310,039 - CA264_09905 0.45 +0.6
2,310,039 - CA264_09905 0.45 +0.6
2,310,039 - CA264_09905 0.45 -0.0
2,310,085 + CA264_09905 0.49 -1.5
2,310,085 + CA264_09905 0.49 -0.3
2,310,096 - CA264_09905 0.50 +0.8
2,310,159 + CA264_09905 0.56 -0.5
2,310,159 + CA264_09905 0.56 +0.2
2,310,160 - CA264_09905 0.56 +1.0
2,310,160 - CA264_09905 0.56 +0.8
2,310,160 - CA264_09905 0.56 +0.9
2,310,172 + CA264_09905 0.58 -1.0
2,310,188 + CA264_09905 0.59 -0.5
2,310,234 - CA264_09905 0.64 -0.3
2,310,317 + CA264_09905 0.72 +0.0
2,310,318 - CA264_09905 0.72 +0.7
2,310,318 - CA264_09905 0.72 +0.1
2,310,330 - CA264_09905 0.73 +1.0
2,310,587 + +0.1
2,310,587 + +0.6
2,310,588 - +0.2
2,310,588 - +0.4
2,310,592 + +0.4
2,310,592 + +0.1
2,310,592 + +0.5
2,310,592 + -0.7
2,310,593 - +0.3
2,310,663 - -0.8
2,310,681 - +1.8
2,310,697 + -0.2
2,310,795 + -0.5
2,310,800 + -0.3
2,310,800 + -0.7
2,310,800 + -0.3
2,310,806 - +0.4
2,310,806 - +0.1
2,310,910 - CA264_09910 0.19 -0.0
2,310,913 + CA264_09910 0.20 -0.8
2,310,918 - CA264_09910 0.21 +0.5
2,311,096 - CA264_09910 0.52 -1.4
2,311,098 - CA264_09910 0.52 +0.5
2,311,098 - CA264_09910 0.52 +0.9
2,311,108 - CA264_09910 0.54 +1.5
2,311,109 + CA264_09910 0.54 +1.6
2,311,146 - CA264_09910 0.60 -0.5
2,311,146 - CA264_09910 0.60 +0.6
2,311,172 - CA264_09910 0.65 +1.5
2,311,197 + CA264_09910 0.69 -1.0
2,311,198 - CA264_09910 0.69 +0.4
2,311,374 + +0.0
2,311,374 + +0.1
2,311,374 + -0.2
2,311,375 - +0.4
2,311,375 - -0.2
2,311,375 - +0.5
2,311,375 - +0.6
2,311,375 - +0.3
2,311,375 - +0.4
2,311,378 + -1.4
2,311,378 + -0.1
2,311,379 - +0.6
2,311,414 + +1.0
2,311,414 + -0.1
2,311,415 - +0.1
2,311,452 + +0.6
2,311,453 - +0.1
2,311,567 + -0.9
2,311,568 - -0.5
2,311,568 - +0.0
2,311,568 - +0.5
2,311,568 - -0.3
2,311,568 - -0.3
2,311,568 - +0.7
2,311,568 - -2.3
2,311,606 + -0.8
2,311,638 - -0.3
2,311,670 - -0.1
2,311,688 + -0.1
2,311,743 + CA264_09915 0.14 -0.0
2,311,743 + CA264_09915 0.14 +0.1
2,311,743 + CA264_09915 0.14 -1.5
2,311,744 - CA264_09915 0.15 -0.1
2,311,744 - CA264_09915 0.15 -0.7
2,311,744 - CA264_09915 0.15 +0.6
2,311,796 + -0.3
2,311,818 - -0.3
2,311,888 - +0.3
2,312,026 + CA264_09920 0.55 +0.3
2,312,067 + CA264_09920 0.64 +1.0
2,312,068 - CA264_09920 0.64 -0.2
2,312,299 + -0.1
2,312,300 - +0.4
2,312,300 - -0.1
2,312,300 - +0.3
2,312,302 + -0.4
2,312,303 - +1.4
2,312,303 - +1.4
2,312,305 + +2.1
2,312,306 - +0.9

Or see this region's nucleotide sequence