Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09560

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09555 and CA264_09560 are separated by 12 nucleotidesCA264_09560 and CA264_09565 overlap by 8 nucleotides CA264_09555: CA264_09555 - potassium transporter Kup, at 2,229,786 to 2,231,723 _09555 CA264_09560: CA264_09560 - TIGR00374 family protein, at 2,231,736 to 2,232,860 _09560 CA264_09565: CA264_09565 - amino acid transporter, at 2,232,853 to 2,234,586 _09565 Position (kb) 2231 2232 2233Strain fitness (log2 ratio) -2 -1 0 1 2at 2230.770 kb on + strand, within CA264_09555at 2230.771 kb on - strand, within CA264_09555at 2230.785 kb on - strand, within CA264_09555at 2230.820 kb on - strand, within CA264_09555at 2230.824 kb on + strand, within CA264_09555at 2230.825 kb on - strand, within CA264_09555at 2230.908 kb on + strand, within CA264_09555at 2230.909 kb on - strand, within CA264_09555at 2230.909 kb on - strand, within CA264_09555at 2230.909 kb on - strand, within CA264_09555at 2230.909 kb on - strand, within CA264_09555at 2230.911 kb on + strand, within CA264_09555at 2230.911 kb on + strand, within CA264_09555at 2230.918 kb on - strand, within CA264_09555at 2230.920 kb on - strand, within CA264_09555at 2231.067 kb on + strand, within CA264_09555at 2231.067 kb on + strand, within CA264_09555at 2231.085 kb on + strand, within CA264_09555at 2231.086 kb on - strand, within CA264_09555at 2231.086 kb on - strand, within CA264_09555at 2231.088 kb on + strand, within CA264_09555at 2231.088 kb on + strand, within CA264_09555at 2231.099 kb on + strand, within CA264_09555at 2231.100 kb on - strand, within CA264_09555at 2231.112 kb on + strand, within CA264_09555at 2231.112 kb on + strand, within CA264_09555at 2231.112 kb on + strand, within CA264_09555at 2231.112 kb on + strand, within CA264_09555at 2231.113 kb on - strand, within CA264_09555at 2231.178 kb on + strand, within CA264_09555at 2231.178 kb on + strand, within CA264_09555at 2231.180 kb on + strand, within CA264_09555at 2231.234 kb on + strand, within CA264_09555at 2231.235 kb on - strand, within CA264_09555at 2231.244 kb on + strand, within CA264_09555at 2231.244 kb on + strand, within CA264_09555at 2231.244 kb on + strand, within CA264_09555at 2231.291 kb on + strand, within CA264_09555at 2231.292 kb on - strand, within CA264_09555at 2231.293 kb on + strand, within CA264_09555at 2231.320 kb on - strand, within CA264_09555at 2231.347 kb on + strand, within CA264_09555at 2231.408 kb on + strand, within CA264_09555at 2231.428 kb on + strand, within CA264_09555at 2231.459 kb on - strand, within CA264_09555at 2231.459 kb on - strand, within CA264_09555at 2231.589 kb on + strandat 2231.589 kb on + strandat 2231.589 kb on + strandat 2231.823 kb on + strandat 2231.841 kb on + strandat 2231.842 kb on - strandat 2231.842 kb on - strandat 2231.932 kb on - strand, within CA264_09560at 2231.933 kb on + strand, within CA264_09560at 2231.933 kb on + strand, within CA264_09560at 2231.934 kb on - strand, within CA264_09560at 2232.061 kb on - strand, within CA264_09560at 2232.138 kb on + strand, within CA264_09560at 2232.139 kb on - strand, within CA264_09560at 2232.139 kb on - strand, within CA264_09560at 2232.247 kb on + strand, within CA264_09560at 2232.247 kb on + strand, within CA264_09560at 2232.247 kb on + strand, within CA264_09560at 2232.255 kb on + strand, within CA264_09560at 2232.255 kb on + strand, within CA264_09560at 2232.255 kb on + strand, within CA264_09560at 2232.273 kb on + strand, within CA264_09560at 2232.291 kb on + strand, within CA264_09560at 2232.291 kb on + strand, within CA264_09560at 2232.536 kb on - strand, within CA264_09560at 2232.669 kb on - strand, within CA264_09560at 2232.677 kb on + strand, within CA264_09560at 2232.705 kb on + strand, within CA264_09560at 2232.706 kb on - strand, within CA264_09560at 2232.706 kb on - strand, within CA264_09560at 2232.706 kb on - strand, within CA264_09560at 2232.706 kb on - strand, within CA264_09560at 2232.751 kb on + strandat 2232.763 kb on - strandat 2232.763 kb on - strandat 2232.807 kb on - strandat 2232.807 kb on - strandat 2232.826 kb on + strandat 2232.827 kb on - strandat 2232.832 kb on + strandat 2232.832 kb on + strandat 2232.833 kb on - strandat 2232.838 kb on + strandat 2232.839 kb on - strandat 2232.839 kb on - strandat 2232.864 kb on - strandat 2232.954 kb on + strandat 2233.112 kb on - strand, within CA264_09565at 2233.155 kb on + strand, within CA264_09565at 2233.155 kb on + strand, within CA264_09565at 2233.155 kb on + strand, within CA264_09565at 2233.155 kb on + strand, within CA264_09565at 2233.155 kb on + strand, within CA264_09565at 2233.156 kb on - strand, within CA264_09565at 2233.156 kb on - strand, within CA264_09565at 2233.159 kb on + strand, within CA264_09565at 2233.160 kb on - strand, within CA264_09565at 2233.160 kb on - strand, within CA264_09565at 2233.160 kb on - strand, within CA264_09565at 2233.165 kb on + strand, within CA264_09565at 2233.165 kb on + strand, within CA264_09565at 2233.165 kb on + strand, within CA264_09565at 2233.165 kb on + strand, within CA264_09565at 2233.166 kb on - strand, within CA264_09565at 2233.222 kb on + strand, within CA264_09565at 2233.223 kb on - strand, within CA264_09565at 2233.310 kb on - strand, within CA264_09565at 2233.324 kb on + strand, within CA264_09565at 2233.325 kb on - strand, within CA264_09565at 2233.417 kb on + strand, within CA264_09565at 2233.513 kb on + strand, within CA264_09565at 2233.606 kb on + strand, within CA264_09565at 2233.671 kb on - strand, within CA264_09565at 2233.786 kb on - strand, within CA264_09565at 2233.786 kb on - strand, within CA264_09565at 2233.796 kb on - strand, within CA264_09565at 2233.800 kb on - strand, within CA264_09565at 2233.800 kb on - strand, within CA264_09565

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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2,230,770 + CA264_09555 0.51 -0.3
2,230,771 - CA264_09555 0.51 -0.5
2,230,785 - CA264_09555 0.52 -0.2
2,230,820 - CA264_09555 0.53 -0.6
2,230,824 + CA264_09555 0.54 -0.2
2,230,825 - CA264_09555 0.54 -0.4
2,230,908 + CA264_09555 0.58 -0.8
2,230,909 - CA264_09555 0.58 -0.5
2,230,909 - CA264_09555 0.58 -0.4
2,230,909 - CA264_09555 0.58 -0.1
2,230,909 - CA264_09555 0.58 -1.5
2,230,911 + CA264_09555 0.58 +0.5
2,230,911 + CA264_09555 0.58 -0.4
2,230,918 - CA264_09555 0.58 +1.0
2,230,920 - CA264_09555 0.59 -1.6
2,231,067 + CA264_09555 0.66 -0.2
2,231,067 + CA264_09555 0.66 -0.4
2,231,085 + CA264_09555 0.67 -0.3
2,231,086 - CA264_09555 0.67 -2.1
2,231,086 - CA264_09555 0.67 -0.3
2,231,088 + CA264_09555 0.67 -0.7
2,231,088 + CA264_09555 0.67 -0.3
2,231,099 + CA264_09555 0.68 -0.3
2,231,100 - CA264_09555 0.68 -0.0
2,231,112 + CA264_09555 0.68 -0.5
2,231,112 + CA264_09555 0.68 -0.7
2,231,112 + CA264_09555 0.68 -0.3
2,231,112 + CA264_09555 0.68 -1.4
2,231,113 - CA264_09555 0.68 +0.2
2,231,178 + CA264_09555 0.72 -0.1
2,231,178 + CA264_09555 0.72 -0.9
2,231,180 + CA264_09555 0.72 +0.3
2,231,234 + CA264_09555 0.75 -0.0
2,231,235 - CA264_09555 0.75 +0.2
2,231,244 + CA264_09555 0.75 -1.2
2,231,244 + CA264_09555 0.75 -1.3
2,231,244 + CA264_09555 0.75 -0.9
2,231,291 + CA264_09555 0.78 +0.0
2,231,292 - CA264_09555 0.78 -0.7
2,231,293 + CA264_09555 0.78 -0.9
2,231,320 - CA264_09555 0.79 +0.3
2,231,347 + CA264_09555 0.81 -0.4
2,231,408 + CA264_09555 0.84 +0.4
2,231,428 + CA264_09555 0.85 +2.6
2,231,459 - CA264_09555 0.86 -0.4
2,231,459 - CA264_09555 0.86 -0.3
2,231,589 + -1.1
2,231,589 + -0.8
2,231,589 + +0.6
2,231,823 + -1.5
2,231,841 + +0.4
2,231,842 - +0.1
2,231,842 - +0.4
2,231,932 - CA264_09560 0.17 +0.5
2,231,933 + CA264_09560 0.18 -0.6
2,231,933 + CA264_09560 0.18 -0.8
2,231,934 - CA264_09560 0.18 -1.5
2,232,061 - CA264_09560 0.29 -0.4
2,232,138 + CA264_09560 0.36 -0.5
2,232,139 - CA264_09560 0.36 -0.5
2,232,139 - CA264_09560 0.36 -0.7
2,232,247 + CA264_09560 0.45 -0.8
2,232,247 + CA264_09560 0.45 -0.5
2,232,247 + CA264_09560 0.45 +0.3
2,232,255 + CA264_09560 0.46 -0.4
2,232,255 + CA264_09560 0.46 -2.5
2,232,255 + CA264_09560 0.46 -1.1
2,232,273 + CA264_09560 0.48 -0.2
2,232,291 + CA264_09560 0.49 -1.0
2,232,291 + CA264_09560 0.49 -0.4
2,232,536 - CA264_09560 0.71 -0.7
2,232,669 - CA264_09560 0.83 +0.9
2,232,677 + CA264_09560 0.84 -0.7
2,232,705 + CA264_09560 0.86 -2.6
2,232,706 - CA264_09560 0.86 -0.0
2,232,706 - CA264_09560 0.86 +0.1
2,232,706 - CA264_09560 0.86 -0.0
2,232,706 - CA264_09560 0.86 -0.7
2,232,751 + +1.1
2,232,763 - -0.5
2,232,763 - -2.1
2,232,807 - -0.7
2,232,807 - -0.5
2,232,826 + -0.5
2,232,827 - -0.4
2,232,832 + -0.6
2,232,832 + -0.6
2,232,833 - -0.7
2,232,838 + -1.5
2,232,839 - -1.5
2,232,839 - +0.2
2,232,864 - -2.1
2,232,954 + -1.1
2,233,112 - CA264_09565 0.15 -2.4
2,233,155 + CA264_09565 0.17 -0.7
2,233,155 + CA264_09565 0.17 -1.9
2,233,155 + CA264_09565 0.17 -1.4
2,233,155 + CA264_09565 0.17 -0.6
2,233,155 + CA264_09565 0.17 -1.3
2,233,156 - CA264_09565 0.17 +0.2
2,233,156 - CA264_09565 0.17 -1.3
2,233,159 + CA264_09565 0.18 -1.9
2,233,160 - CA264_09565 0.18 -1.0
2,233,160 - CA264_09565 0.18 -1.8
2,233,160 - CA264_09565 0.18 -0.3
2,233,165 + CA264_09565 0.18 -1.9
2,233,165 + CA264_09565 0.18 +1.0
2,233,165 + CA264_09565 0.18 -0.6
2,233,165 + CA264_09565 0.18 +0.6
2,233,166 - CA264_09565 0.18 -1.0
2,233,222 + CA264_09565 0.21 -1.1
2,233,223 - CA264_09565 0.21 +0.2
2,233,310 - CA264_09565 0.26 -0.9
2,233,324 + CA264_09565 0.27 -0.9
2,233,325 - CA264_09565 0.27 +1.0
2,233,417 + CA264_09565 0.33 +0.4
2,233,513 + CA264_09565 0.38 -0.7
2,233,606 + CA264_09565 0.43 +0.9
2,233,671 - CA264_09565 0.47 -0.6
2,233,786 - CA264_09565 0.54 +0.6
2,233,786 - CA264_09565 0.54 -1.0
2,233,796 - CA264_09565 0.54 -0.6
2,233,800 - CA264_09565 0.55 -1.6
2,233,800 - CA264_09565 0.55 -0.3

Or see this region's nucleotide sequence