Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05450

Experiment: m.b. Cephalothin 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_05440 and CA264_05445 are separated by 319 nucleotidesCA264_05445 and CA264_05450 are separated by 81 nucleotidesCA264_05450 and CA264_05455 are separated by 159 nucleotidesCA264_05455 and CA264_05460 are separated by 66 nucleotides CA264_05440: CA264_05440 - glucose-fructose oxidoreductase, at 1,262,575 to 1,263,744 _05440 CA264_05445: CA264_05445 - peptidylprolyl isomerase, at 1,264,064 to 1,264,576 _05445 CA264_05450: CA264_05450 - DNA-binding protein, at 1,264,658 to 1,266,601 _05450 CA264_05455: CA264_05455 - hypothetical protein, at 1,266,761 to 1,267,330 _05455 CA264_05460: CA264_05460 - hypothetical protein, at 1,267,397 to 1,269,655 _05460 Position (kb) 1264 1265 1266 1267Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1263.735 kb on - strandat 1263.735 kb on - strandat 1263.752 kb on + strandat 1263.755 kb on - strandat 1263.812 kb on - strandat 1263.923 kb on + strandat 1263.923 kb on + strandat 1263.924 kb on - strandat 1263.934 kb on + strandat 1263.972 kb on - strandat 1264.000 kb on + strandat 1264.042 kb on + strandat 1264.058 kb on + strandat 1264.065 kb on + strandat 1264.155 kb on + strand, within CA264_05445at 1264.157 kb on + strand, within CA264_05445at 1264.220 kb on + strand, within CA264_05445at 1264.259 kb on - strand, within CA264_05445at 1264.266 kb on + strand, within CA264_05445at 1264.266 kb on + strand, within CA264_05445at 1264.266 kb on + strand, within CA264_05445at 1264.267 kb on - strand, within CA264_05445at 1264.458 kb on + strand, within CA264_05445at 1264.462 kb on + strand, within CA264_05445at 1264.462 kb on + strand, within CA264_05445at 1264.462 kb on + strand, within CA264_05445at 1264.549 kb on + strandat 1264.550 kb on - strandat 1264.550 kb on - strandat 1264.553 kb on + strandat 1264.659 kb on + strandat 1264.703 kb on + strandat 1264.704 kb on - strandat 1264.705 kb on + strandat 1264.705 kb on + strandat 1264.706 kb on - strandat 1264.713 kb on - strandat 1264.735 kb on - strandat 1264.756 kb on + strandat 1264.821 kb on - strandat 1264.873 kb on + strand, within CA264_05450at 1264.875 kb on + strand, within CA264_05450at 1264.876 kb on - strand, within CA264_05450at 1264.879 kb on + strand, within CA264_05450at 1264.879 kb on + strand, within CA264_05450at 1264.880 kb on - strand, within CA264_05450at 1264.882 kb on + strand, within CA264_05450at 1264.971 kb on - strand, within CA264_05450at 1265.526 kb on + strand, within CA264_05450at 1265.575 kb on + strand, within CA264_05450at 1265.609 kb on - strand, within CA264_05450at 1265.662 kb on + strand, within CA264_05450at 1265.768 kb on - strand, within CA264_05450at 1265.770 kb on - strand, within CA264_05450at 1265.770 kb on - strand, within CA264_05450at 1266.094 kb on + strand, within CA264_05450at 1266.152 kb on - strand, within CA264_05450at 1266.305 kb on + strand, within CA264_05450at 1266.305 kb on + strand, within CA264_05450at 1266.305 kb on + strand, within CA264_05450at 1266.305 kb on + strand, within CA264_05450at 1266.525 kb on + strandat 1266.585 kb on + strandat 1266.586 kb on - strandat 1266.588 kb on - strandat 1266.591 kb on - strandat 1266.603 kb on + strandat 1266.603 kb on + strandat 1266.603 kb on + strandat 1266.604 kb on - strandat 1266.604 kb on - strandat 1266.604 kb on - strandat 1266.649 kb on + strandat 1266.650 kb on - strandat 1266.650 kb on - strandat 1266.650 kb on - strandat 1266.650 kb on - strandat 1266.654 kb on - strandat 1266.666 kb on + strandat 1266.680 kb on + strandat 1266.681 kb on - strandat 1266.681 kb on - strandat 1266.696 kb on - strandat 1266.711 kb on + strandat 1266.868 kb on + strand, within CA264_05455at 1266.868 kb on + strand, within CA264_05455at 1266.927 kb on - strand, within CA264_05455at 1266.927 kb on - strand, within CA264_05455at 1267.027 kb on + strand, within CA264_05455at 1267.027 kb on + strand, within CA264_05455at 1267.203 kb on + strand, within CA264_05455at 1267.298 kb on + strandat 1267.299 kb on - strandat 1267.299 kb on - strandat 1267.299 kb on - strandat 1267.299 kb on - strandat 1267.316 kb on + strandat 1267.342 kb on + strandat 1267.367 kb on + strandat 1267.368 kb on - strandat 1267.393 kb on + strandat 1267.500 kb on + strandat 1267.500 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
remove
1,263,735 - -0.9
1,263,735 - +2.1
1,263,752 + -0.2
1,263,755 - -0.5
1,263,812 - -0.4
1,263,923 + +1.1
1,263,923 + -1.2
1,263,924 - -0.3
1,263,934 + +0.6
1,263,972 - -0.7
1,264,000 + +1.5
1,264,042 + -0.1
1,264,058 + -0.5
1,264,065 + +0.2
1,264,155 + CA264_05445 0.18 -0.7
1,264,157 + CA264_05445 0.18 +0.6
1,264,220 + CA264_05445 0.30 +0.2
1,264,259 - CA264_05445 0.38 +0.2
1,264,266 + CA264_05445 0.39 -0.5
1,264,266 + CA264_05445 0.39 -0.3
1,264,266 + CA264_05445 0.39 -0.3
1,264,267 - CA264_05445 0.40 +0.2
1,264,458 + CA264_05445 0.77 -1.2
1,264,462 + CA264_05445 0.78 +0.2
1,264,462 + CA264_05445 0.78 -1.0
1,264,462 + CA264_05445 0.78 -0.3
1,264,549 + -0.5
1,264,550 - -0.9
1,264,550 - -0.7
1,264,553 + -0.2
1,264,659 + -0.3
1,264,703 + -0.3
1,264,704 - +1.2
1,264,705 + -0.6
1,264,705 + +0.6
1,264,706 - +0.9
1,264,713 - +0.9
1,264,735 - +0.5
1,264,756 + -1.5
1,264,821 - -0.0
1,264,873 + CA264_05450 0.11 -0.4
1,264,875 + CA264_05450 0.11 -0.4
1,264,876 - CA264_05450 0.11 +0.5
1,264,879 + CA264_05450 0.11 +0.8
1,264,879 + CA264_05450 0.11 -0.1
1,264,880 - CA264_05450 0.11 -0.6
1,264,882 + CA264_05450 0.12 -0.3
1,264,971 - CA264_05450 0.16 -0.6
1,265,526 + CA264_05450 0.45 -1.3
1,265,575 + CA264_05450 0.47 -0.6
1,265,609 - CA264_05450 0.49 -0.3
1,265,662 + CA264_05450 0.52 -0.6
1,265,768 - CA264_05450 0.57 +0.1
1,265,770 - CA264_05450 0.57 +0.8
1,265,770 - CA264_05450 0.57 -0.7
1,266,094 + CA264_05450 0.74 -0.7
1,266,152 - CA264_05450 0.77 +0.6
1,266,305 + CA264_05450 0.85 +0.2
1,266,305 + CA264_05450 0.85 -2.4
1,266,305 + CA264_05450 0.85 -0.3
1,266,305 + CA264_05450 0.85 +1.1
1,266,525 + -0.8
1,266,585 + +0.2
1,266,586 - -1.4
1,266,588 - -1.4
1,266,591 - -0.3
1,266,603 + -1.5
1,266,603 + -1.1
1,266,603 + +1.0
1,266,604 - +1.3
1,266,604 - -0.3
1,266,604 - -0.6
1,266,649 + -1.9
1,266,650 - +0.0
1,266,650 - -0.1
1,266,650 - +0.1
1,266,650 - +0.5
1,266,654 - +0.5
1,266,666 + -0.9
1,266,680 + -0.3
1,266,681 - +0.3
1,266,681 - +0.3
1,266,696 - +0.8
1,266,711 + -0.6
1,266,868 + CA264_05455 0.19 -2.2
1,266,868 + CA264_05455 0.19 -2.3
1,266,927 - CA264_05455 0.29 +1.7
1,266,927 - CA264_05455 0.29 -1.8
1,267,027 + CA264_05455 0.47 -1.2
1,267,027 + CA264_05455 0.47 -2.0
1,267,203 + CA264_05455 0.78 -2.6
1,267,298 + -0.9
1,267,299 - -3.1
1,267,299 - +0.2
1,267,299 - -0.2
1,267,299 - -2.5
1,267,316 + -1.0
1,267,342 + +0.8
1,267,367 + +0.7
1,267,368 - +1.2
1,267,393 + +0.5
1,267,500 + +0.9
1,267,500 + -0.4

Or see this region's nucleotide sequence