Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04920

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04910 and CA264_04915 are separated by 105 nucleotidesCA264_04915 and CA264_04920 are separated by 76 nucleotidesCA264_04920 and CA264_04925 are separated by 333 nucleotides CA264_04910: CA264_04910 - 8-amino-7-oxononanoate synthase, at 1,139,454 to 1,140,692 _04910 CA264_04915: CA264_04915 - histone H1, at 1,140,798 to 1,140,992 _04915 CA264_04920: CA264_04920 - tyrosine--tRNA ligase, at 1,141,069 to 1,142,373 _04920 CA264_04925: CA264_04925 - hypothetical protein, at 1,142,707 to 1,143,771 _04925 Position (kb) 1141 1142 1143Strain fitness (log2 ratio) -2 -1 0 1at 1140.709 kb on - strandat 1140.875 kb on + strand, within CA264_04915at 1141.009 kb on + strandat 1142.404 kb on - strandat 1142.471 kb on - strandat 1142.471 kb on - strandat 1142.472 kb on + strandat 1142.511 kb on + strandat 1142.511 kb on + strandat 1142.512 kb on - strandat 1142.576 kb on + strandat 1142.576 kb on + strandat 1142.579 kb on - strandat 1142.633 kb on - strandat 1142.708 kb on + strandat 1142.708 kb on + strandat 1142.709 kb on - strandat 1142.710 kb on + strandat 1142.710 kb on + strandat 1142.711 kb on - strandat 1142.720 kb on - strandat 1142.720 kb on - strandat 1142.793 kb on - strandat 1142.803 kb on + strandat 1142.803 kb on + strandat 1143.006 kb on - strand, within CA264_04925at 1143.006 kb on - strand, within CA264_04925at 1143.023 kb on + strand, within CA264_04925at 1143.024 kb on - strand, within CA264_04925at 1143.158 kb on + strand, within CA264_04925at 1143.158 kb on + strand, within CA264_04925at 1143.161 kb on + strand, within CA264_04925at 1143.162 kb on - strand, within CA264_04925at 1143.192 kb on - strand, within CA264_04925at 1143.211 kb on - strand, within CA264_04925at 1143.261 kb on + strand, within CA264_04925

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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1,140,709 - -0.6
1,140,875 + CA264_04915 0.39 +0.2
1,141,009 + -0.1
1,142,404 - -0.1
1,142,471 - -0.4
1,142,471 - -0.4
1,142,472 + -1.8
1,142,511 + -1.0
1,142,511 + -0.5
1,142,512 - +0.2
1,142,576 + -0.5
1,142,576 + -0.7
1,142,579 - -2.5
1,142,633 - -0.1
1,142,708 + -0.3
1,142,708 + +0.2
1,142,709 - -0.3
1,142,710 + +0.3
1,142,710 + -0.0
1,142,711 - -2.2
1,142,720 - -0.8
1,142,720 - -1.0
1,142,793 - +0.5
1,142,803 + +0.4
1,142,803 + -0.3
1,143,006 - CA264_04925 0.28 +0.4
1,143,006 - CA264_04925 0.28 +0.4
1,143,023 + CA264_04925 0.30 -1.2
1,143,024 - CA264_04925 0.30 -0.9
1,143,158 + CA264_04925 0.42 -0.4
1,143,158 + CA264_04925 0.42 -0.2
1,143,161 + CA264_04925 0.43 -0.9
1,143,162 - CA264_04925 0.43 -0.3
1,143,192 - CA264_04925 0.46 +0.3
1,143,211 - CA264_04925 0.47 -1.4
1,143,261 + CA264_04925 0.52 -2.6

Or see this region's nucleotide sequence