Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03825

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03820 and CA264_03825 are separated by 137 nucleotidesCA264_03825 and CA264_03830 are separated by 50 nucleotidesCA264_03830 and CA264_03835 are separated by 50 nucleotidesCA264_03835 and CA264_03840 are separated by 67 nucleotides CA264_03820: CA264_03820 - ketoacyl-ACP synthase III, at 892,965 to 893,963 _03820 CA264_03825: CA264_03825 - phosphate acyltransferase PlsX, at 894,101 to 895,042 _03825 CA264_03830: CA264_03830 - 50S ribosomal protein L32, at 895,093 to 895,290 _03830 CA264_03835: CA264_03835 - hypothetical protein, at 895,341 to 895,886 _03835 CA264_03840: CA264_03840 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 895,954 to 896,976 _03840 Position (kb) 894 895 896Strain fitness (log2 ratio) -1 0 1 2at 894.024 kb on + strandat 895.433 kb on - strand, within CA264_03835at 895.433 kb on - strand, within CA264_03835at 895.526 kb on - strand, within CA264_03835at 895.812 kb on + strand, within CA264_03835at 895.875 kb on + strandat 895.876 kb on - strandat 895.955 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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894,024 + +2.6
895,433 - CA264_03835 0.17 +0.0
895,433 - CA264_03835 0.17 -0.0
895,526 - CA264_03835 0.34 -0.7
895,812 + CA264_03835 0.86 +0.3
895,875 + +1.8
895,876 - +0.0
895,955 + -0.0

Or see this region's nucleotide sequence